Wall clock time and date at job start Wed Apr 1 2020 04:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47554 * 2 1 4 4 C 1.53010 * 109.47027 * 119.99518 * 2 1 3 5 5 N 1.46506 * 109.46877 * 174.99969 * 4 2 1 6 6 C 1.34772 * 119.99555 * 180.02562 * 5 4 2 7 7 O 1.21589 * 120.00108 * 0.02562 * 6 5 4 8 8 C 1.47585 * 119.99929 * 179.97438 * 6 5 4 9 9 C 1.40084 * 120.35574 * 359.97372 * 8 6 5 10 10 N 1.31167 * 121.11938 * 180.02562 * 9 8 6 11 11 C 1.33367 * 121.67447 * 0.02562 * 10 9 8 12 12 C 1.41845 * 133.16684 * 179.97438 * 11 10 9 13 13 C 1.34452 * 107.96006 * 180.02562 * 12 11 10 14 14 N 1.36545 * 109.71370 * 0.02562 * 13 12 11 15 15 H 0.97003 * 125.59715 * 180.02562 * 14 13 12 16 16 C 1.37852 * 108.80200 * 0.02562 * 14 13 12 17 17 C 1.38731 * 133.56557 * 179.97438 * 16 14 13 18 18 N 1.46896 * 109.47529 * 239.99687 * 2 1 3 19 19 C 1.46897 * 111.00194 * 84.99707 * 18 2 1 20 20 C 1.50693 * 109.47481 * 180.02562 * 19 18 2 21 21 O 1.21301 * 119.99874 * 0.02562 * 20 19 18 22 22 N 1.34783 * 120.00340 * 180.02562 * 20 19 18 23 23 C 1.37094 * 119.99949 * 179.97438 * 22 20 19 24 24 H 1.07999 * 120.00375 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99778 * 179.97438 * 23 22 20 26 26 N 1.31410 * 119.99972 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 119.99927 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47349 * 89.99975 * 27 25 23 29 29 H 1.48505 * 109.47309 * 209.99501 * 27 25 23 30 30 H 1.48500 * 109.47144 * 329.99842 * 27 25 23 31 31 H 1.09001 * 109.47245 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47154 * 300.00627 * 1 2 3 33 33 H 1.09002 * 109.47221 * 60.00247 * 1 2 3 34 34 H 1.08992 * 109.46738 * 55.00312 * 4 2 1 35 35 H 1.08995 * 109.47238 * 295.00056 * 4 2 1 36 36 H 0.96999 * 120.00277 * 0.02562 * 5 4 2 37 37 H 1.07996 * 119.44152 * 0.05205 * 9 8 6 38 38 H 1.08001 * 126.02266 * 0.04472 * 12 11 10 39 39 H 1.08002 * 125.14431 * 180.26568 * 13 12 11 40 40 H 1.07998 * 120.91264 * 0.04370 * 17 16 14 41 41 H 1.00905 * 110.99608 * 321.04744 * 18 2 1 42 42 H 1.09003 * 109.47269 * 300.00606 * 19 18 2 43 43 H 1.09002 * 109.46769 * 60.00175 * 19 18 2 44 44 H 0.96999 * 119.99954 * 0.02562 * 22 20 19 45 45 H 0.97004 * 120.00193 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5001 -0.8263 1.1907 6 6 4.1730 -1.4290 2.1908 7 8 3.5682 -1.8859 3.1416 8 6 5.6438 -1.5355 2.1315 9 6 6.3479 -1.0132 1.0389 10 7 7.6549 -1.0999 0.9706 11 6 8.3690 -1.6863 1.9322 12 6 9.7581 -1.9131 2.1081 13 6 9.9283 -2.5592 3.2749 14 7 8.7159 -2.7651 3.8684 15 1 8.5716 -3.2099 4.7183 16 6 7.7308 -2.2371 3.0615 17 6 6.3493 -2.1625 3.1635 18 7 2.0197 -0.6925 -1.1993 19 6 2.0825 0.2224 -2.3468 20 6 2.5874 -0.5220 -3.5559 21 8 2.8671 -1.6992 -3.4702 22 7 2.7284 0.1202 -4.7325 23 6 3.1882 -0.5569 -5.8322 24 1 3.4380 -1.6048 -5.7557 25 6 3.3330 0.1051 -7.0453 26 7 3.7743 -0.5439 -8.0994 27 14 2.9017 1.9177 -7.1774 28 1 4.1025 2.7360 -6.8711 29 1 2.4374 2.2170 -8.5559 30 1 1.8223 2.2415 -6.2103 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5140 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6054 -1.7197 1.2953 35 1 1.7516 -0.1582 2.1370 36 1 3.9825 -0.4622 0.4320 37 1 5.8054 -0.5305 0.2395 38 1 10.5413 -1.6185 1.4252 39 1 10.8802 -2.8652 3.6831 40 1 5.8330 -2.5745 4.0180 41 1 1.4496 -1.4980 -1.4099 42 1 1.0871 0.6162 -2.5525 43 1 2.7589 1.0461 -2.1182 44 1 2.5051 1.0617 -4.8009 45 1 3.8757 -0.0817 -8.9462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662256917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:48 Heat of formation + Delta-G solvation = -23.787385 kcal Electronic energy + Delta-G solvation = -28821.336060 eV Core-core repulsion = 24645.228917 eV Total energy + Delta-G solvation = -4176.107143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.76099 -40.87036 -40.26761 -38.66815 -38.06928 -35.98859 -35.09376 -33.97273 -33.71675 -32.08664 -31.17961 -30.56562 -28.06055 -27.33483 -25.48099 -24.68876 -24.45219 -22.00087 -21.82798 -21.48895 -21.25196 -20.27965 -19.49501 -18.39722 -17.81055 -17.54546 -17.22525 -17.00688 -16.67029 -16.43769 -16.23438 -16.09131 -15.65604 -15.36893 -15.17662 -14.86550 -14.55615 -14.48609 -14.23496 -14.15358 -13.92841 -13.80919 -13.59576 -13.47710 -13.41247 -13.29928 -13.09717 -12.76946 -12.49196 -12.38286 -11.96210 -11.85409 -11.47952 -11.44591 -11.36012 -10.40501 -10.39283 -10.21426 -10.06325 -9.54442 -9.31979 -9.12981 -8.38554 -5.99211 -0.48285 0.19216 1.31813 1.38449 1.46563 1.46752 1.88954 2.00944 2.01005 2.25597 2.30948 2.75168 2.89625 3.18363 3.23460 3.43586 3.64531 3.76136 3.81857 3.89050 4.00756 4.10990 4.18274 4.24903 4.36747 4.43924 4.49714 4.60966 4.61887 4.69944 4.79784 4.89900 4.93034 4.99842 5.03715 5.30073 5.33402 5.41025 5.47706 5.55849 5.81141 5.93902 6.07581 6.37677 6.51709 6.54366 6.62968 6.92126 6.93196 7.17756 7.44039 8.01618 8.79346 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009914 B = 0.002507 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.648076 B =11165.374903 C =13442.154536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 H 0.107 0.893 4 C 0.133 3.867 5 N -0.699 5.699 6 C 0.567 3.433 7 O -0.581 6.581 8 C -0.196 4.196 9 C 0.131 3.869 10 N -0.489 5.489 11 C 0.087 3.913 12 C -0.238 4.238 13 C 0.121 3.879 14 N -0.565 5.565 15 H 0.440 0.560 16 C 0.011 3.989 17 C -0.012 4.012 18 N -0.680 5.680 19 C 0.062 3.938 20 C 0.448 3.552 21 O -0.614 6.614 22 N -0.592 5.592 23 C -0.326 4.326 24 H 0.053 0.947 25 C -0.018 4.018 26 N -0.937 5.937 27 Si 0.966 3.034 28 H -0.258 1.258 29 H -0.278 1.278 30 H -0.228 1.228 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.412 0.588 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.235 0.765 40 H 0.154 0.846 41 H 0.346 0.654 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.390 0.610 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.594 5.351 28.010 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 H 0.125 0.875 4 C 0.009 3.991 5 N -0.349 5.349 6 C 0.355 3.645 7 O -0.463 6.463 8 C -0.202 4.202 9 C -0.039 4.039 10 N -0.197 5.197 11 C -0.044 4.044 12 C -0.263 4.263 13 C -0.011 4.011 14 N -0.169 5.169 15 H 0.282 0.718 16 C -0.099 4.099 17 C -0.040 4.040 18 N -0.313 5.313 19 C -0.070 4.070 20 C 0.236 3.764 21 O -0.499 6.499 22 N -0.234 5.234 23 C -0.456 4.456 24 H 0.071 0.929 25 C -0.216 4.216 26 N -0.578 5.578 27 Si 0.786 3.214 28 H -0.182 1.182 29 H -0.203 1.203 30 H -0.151 1.151 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.250 0.750 37 H 0.185 0.815 38 H 0.178 0.822 39 H 0.251 0.749 40 H 0.172 0.828 41 H 0.165 0.835 42 H 0.097 0.903 43 H 0.138 0.862 44 H 0.225 0.775 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.549 4.584 28.101 29.008 hybrid contribution -1.363 0.121 -0.619 1.502 sum 4.185 4.705 27.482 28.194 Atomic orbital electron populations 1.22386 0.94655 1.02809 1.03713 1.21895 0.94508 0.98655 0.88291 0.87507 1.21468 0.78886 1.00822 0.97874 1.45718 1.08475 1.58021 1.22678 1.17969 0.86592 0.77625 0.82354 1.90724 1.70369 1.50248 1.34980 1.20541 0.93899 1.07292 0.98517 1.22944 0.89308 0.95655 0.96019 1.67201 1.08018 1.16601 1.27886 1.19834 0.96283 0.97754 0.90537 1.20940 0.92910 1.10860 1.01609 1.22855 0.90240 0.95899 0.92145 1.41840 1.04404 1.49672 1.21026 0.71816 1.18981 0.91194 1.04285 0.95439 1.20647 0.90102 0.94915 0.98361 1.60144 1.58759 1.09253 1.03115 1.21692 1.02091 0.95367 0.87853 1.21083 0.82354 0.87958 0.84990 1.90569 1.55240 1.18790 1.85270 1.42032 1.60688 1.11845 1.08828 1.18987 1.42132 0.96027 0.88417 0.92877 1.26143 0.96509 1.05063 0.93893 1.69815 1.46534 1.39609 1.01849 0.85354 0.80247 0.76467 0.79362 1.18209 1.20296 1.15126 0.92566 0.89895 0.91576 0.92693 0.89754 0.74992 0.81476 0.82156 0.74872 0.82837 0.83505 0.90314 0.86171 0.77457 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 9.16 71.98 0.66 -1.82 16 2 C 0.08 1.31 2.75 44.92 0.12 1.43 16 3 H 0.11 1.44 7.80 -2.39 -0.02 1.42 16 4 C 0.13 2.68 5.37 86.38 0.46 3.15 16 5 N -0.70 -16.31 5.34 -466.21 -2.49 -18.80 16 6 C 0.57 15.56 7.77 86.71 0.67 16.24 16 7 O -0.58 -18.78 16.40 -3.99 -0.07 -18.84 16 8 C -0.20 -5.13 5.89 -19.97 -0.12 -5.25 16 9 C 0.13 3.59 10.69 85.24 0.91 4.50 16 10 N -0.49 -14.75 10.40 -187.79 -1.95 -16.71 16 11 C 0.09 2.22 7.32 40.46 0.30 2.51 16 12 C -0.24 -4.24 10.84 22.30 0.24 -4.00 16 13 C 0.12 1.07 11.82 83.09 0.98 2.06 16 14 N -0.57 -6.24 6.14 -187.65 -1.15 -7.39 16 15 H 0.44 1.63 8.96 -92.71 -0.83 0.80 16 16 C 0.01 0.23 7.27 38.97 0.28 0.51 16 17 C -0.01 -0.27 9.72 22.78 0.22 -0.05 16 18 N -0.68 -17.25 5.32 -495.59 -2.63 -19.88 16 19 C 0.06 1.66 5.96 85.56 0.51 2.17 16 20 C 0.45 19.30 7.82 87.65 0.69 19.98 16 21 O -0.61 -33.28 15.78 -3.09 -0.05 -33.33 16 22 N -0.59 -27.15 5.09 -306.98 -1.56 -28.71 16 23 C -0.33 -19.03 10.16 84.04 0.85 -18.18 16 24 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 25 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 26 N -0.94 -56.90 13.96 21.66 0.30 -56.60 16 27 Si 0.97 38.47 27.74 68.60 1.90 40.38 16 28 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 29 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 30 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 31 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 32 H 0.08 0.88 8.14 -2.38 -0.02 0.87 16 33 H 0.07 0.91 7.45 -2.39 -0.02 0.90 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.41 9.22 6.17 -92.71 -0.57 8.65 16 37 H 0.17 4.09 6.38 -2.91 -0.02 4.07 16 38 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 39 H 0.24 -0.50 8.06 -2.91 -0.02 -0.52 16 40 H 0.15 3.08 7.72 -2.91 -0.02 3.06 16 41 H 0.35 10.02 8.17 -89.69 -0.73 9.29 16 42 H 0.08 1.68 7.44 -2.39 -0.02 1.66 16 43 H 0.12 2.53 8.06 -2.39 -0.02 2.51 16 44 H 0.39 14.61 5.76 -92.71 -0.53 14.08 16 45 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -90.09 383.21 -2.08 -92.17 By element: Atomic # 1 Polarization: 46.63 SS G_CDS: -1.64 Total: 44.99 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 7.26 Total: 22.72 kcal Atomic # 7 Polarization: -138.59 SS G_CDS: -9.49 Total: -148.08 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.11 Total: -52.17 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 1.90 Total: 40.38 kcal Total: -90.09 -2.08 -92.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662256917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.385 kcal (2) G-P(sol) polarization free energy of solvation -90.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds