Wall clock time and date at job start Wed Apr 1 2020 04:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 N 1.46905 * 109.47019 * 184.99887 * 4 2 1 6 6 C 1.46901 * 111.00168 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.46911 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00122 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99752 * 180.02562 * 7 6 5 10 10 C 1.37100 * 119.99761 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00039 * 0.02562 * 10 9 7 12 12 C 1.38947 * 119.99520 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00358 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99809 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47177 * 89.99939 * 14 12 10 16 16 H 1.48501 * 109.47034 * 210.00179 * 14 12 10 17 17 H 1.48496 * 109.46939 * 330.00091 * 14 12 10 18 18 N 1.46504 * 109.46883 * 120.00066 * 2 1 3 19 19 C 1.34779 * 119.99783 * 274.99286 * 18 2 1 20 20 O 1.21640 * 119.99996 * 0.02562 * 19 18 2 21 21 C 1.47226 * 119.99902 * 180.02562 * 19 18 2 22 22 C 1.38936 * 120.86071 * 0.02562 * 21 19 18 23 23 C 1.39736 * 119.29589 * 179.97438 * 22 21 19 24 24 C 1.35118 * 121.14294 * 0.02562 * 23 22 21 25 25 N 1.36148 * 121.71676 * 359.97136 * 24 23 22 26 26 C 1.37007 * 132.64189 * 180.02562 * 25 24 23 27 27 C 1.34950 * 107.15233 * 180.02562 * 26 25 24 28 28 N 1.33742 * 108.60584 * 359.97438 * 27 26 25 29 29 C 1.31983 * 109.17290 * 359.73805 * 28 27 26 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 33 33 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 34 34 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 35 35 H 1.00900 * 110.99539 * 56.04548 * 5 4 2 36 36 H 1.08996 * 109.47029 * 299.99968 * 6 5 4 37 37 H 1.09002 * 109.46992 * 60.00059 * 6 5 4 38 38 H 0.97003 * 119.99807 * 0.02562 * 9 7 6 39 39 H 0.97003 * 120.00338 * 179.97438 * 13 12 10 40 40 H 0.97003 * 120.00173 * 95.00359 * 18 2 1 41 41 H 1.08009 * 120.35449 * 0.02562 * 22 21 19 42 42 H 1.08003 * 119.43445 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.13914 * 179.97438 * 24 23 22 44 44 H 1.08001 * 126.41850 * 359.96443 * 26 25 24 45 45 H 1.08002 * 125.69740 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.5040 -0.8268 -1.1905 6 6 4.0303 -1.5151 -2.3768 7 6 5.5316 -1.6047 -2.2807 8 8 6.1066 -1.1404 -1.3189 9 7 6.2354 -2.1998 -3.2641 10 6 7.6012 -2.2808 -3.1770 11 1 8.1131 -1.8681 -2.3202 12 6 8.3267 -2.8948 -4.1905 13 7 7.7038 -3.3974 -5.2328 14 14 10.1876 -3.0059 -4.0716 15 1 10.5652 -4.2638 -3.3786 16 1 10.7722 -2.9981 -5.4367 17 1 10.7048 -1.8440 -3.3050 18 7 2.0184 -0.6906 1.1962 19 6 2.1472 -0.0182 2.3571 20 8 1.8576 1.1619 2.4118 21 6 2.6384 -0.7121 3.5591 22 6 2.9748 -2.0595 3.5168 23 6 3.4382 -2.6853 4.6770 24 6 3.5636 -2.0031 5.8365 25 7 3.2467 -0.6821 5.9277 26 6 3.2860 0.2124 6.9647 27 6 2.8548 1.3976 6.4846 28 7 2.5560 1.2500 5.1893 29 6 2.7910 0.0020 4.8297 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -1.7199 -1.2951 34 1 1.7517 -0.1584 -2.1370 35 1 3.7995 -1.2884 -0.3433 36 1 3.6095 -2.5191 -2.4308 37 1 3.7557 -0.9573 -3.2721 38 1 5.7756 -2.5701 -4.0338 39 1 8.2103 -3.8257 -5.9405 40 1 2.2491 -1.6318 1.1527 41 1 2.8799 -2.6171 2.5966 42 1 3.7000 -3.7327 4.6467 43 1 3.9246 -2.5191 6.7139 44 1 3.6019 0.0071 7.9769 45 1 2.7667 2.3127 7.0514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669424221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:43 Heat of formation + Delta-G solvation = 31.573461 kcal Electronic energy + Delta-G solvation = -29066.265090 eV Core-core repulsion = 24892.558573 eV Total energy + Delta-G solvation = -4173.706517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.93818 -39.88838 -38.32009 -37.49630 -36.65339 -34.27691 -33.89402 -33.56213 -31.34711 -31.16455 -30.35751 -28.89148 -27.60174 -25.24814 -24.88880 -23.31001 -22.90234 -22.41745 -21.35858 -20.57716 -19.30356 -18.38097 -17.88532 -17.69646 -16.85954 -16.24339 -16.17480 -16.11479 -15.69017 -15.31404 -14.97946 -14.55817 -14.38253 -14.34701 -14.24202 -13.88664 -13.77098 -13.52201 -13.07626 -12.88513 -12.63836 -12.54970 -12.45375 -12.15755 -11.94245 -11.73546 -11.61748 -11.48427 -11.10810 -11.06847 -10.94682 -10.40587 -10.24318 -10.23324 -9.86893 -9.52581 -9.17523 -9.08359 -8.48316 -8.20124 -8.09603 -7.97678 -6.43398 -3.84175 0.01095 0.98224 2.19024 2.50842 2.77989 3.01513 3.16320 3.25315 3.31698 3.50536 3.80722 3.88724 4.00977 4.07073 4.27152 4.31793 4.43537 4.50791 4.82046 4.97445 5.00704 5.13714 5.18295 5.20685 5.21855 5.27340 5.35302 5.44264 5.52327 5.57686 5.59588 5.63461 5.75311 5.94075 5.98791 6.03427 6.10669 6.24592 6.36692 6.43201 6.70881 7.14252 7.38667 7.53745 7.58877 7.72269 8.04695 8.19628 8.59641 9.16417 9.52539 10.04102 10.74306 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011485 B = 0.002349 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.318829 B =11914.921486 C =13530.765120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.101 0.899 4 C 0.051 3.949 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 N -0.720 5.720 19 C 0.566 3.434 20 O -0.500 6.500 21 C -0.089 4.089 22 C -0.054 4.054 23 C -0.155 4.155 24 C 0.084 3.916 25 N -0.373 5.373 26 C -0.099 4.099 27 C 0.028 3.972 28 N -0.460 5.460 29 C 0.254 3.746 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.089 0.911 35 H 0.347 0.653 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.394 0.606 41 H 0.148 0.852 42 H 0.158 0.842 43 H 0.166 0.834 44 H 0.185 0.815 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.954 -2.322 19.081 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.119 0.881 4 C -0.079 4.079 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.200 5.200 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.373 5.373 19 C 0.351 3.649 20 O -0.374 6.374 21 C -0.095 4.095 22 C -0.078 4.078 23 C -0.176 4.176 24 C -0.039 4.039 25 N -0.046 5.046 26 C -0.229 4.229 27 C -0.122 4.122 28 N -0.178 5.178 29 C 0.007 3.993 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.166 0.834 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.229 0.771 41 H 0.166 0.834 42 H 0.176 0.824 43 H 0.183 0.817 44 H 0.202 0.798 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.871 0.068 18.903 24.052 hybrid contribution 0.978 -2.510 0.260 2.706 sum -13.894 -2.442 19.163 23.795 Atomic orbital electron populations 1.22156 0.94928 1.02052 1.02906 1.21058 0.93451 0.98626 0.82615 0.88142 1.22317 0.88768 0.98984 0.97869 1.59992 1.07529 1.57590 1.04889 1.21696 0.95131 0.96925 0.94500 1.19814 0.88093 0.84272 0.85345 1.90539 1.71107 1.51391 1.33531 1.41865 1.07412 1.50953 1.19812 1.19700 0.81531 1.35079 1.06539 0.87944 1.25257 1.00682 0.96802 0.95199 1.69608 1.36713 1.38648 1.09362 0.85863 0.82192 0.78833 0.77448 1.20450 1.20900 1.19379 1.45857 1.68163 1.13674 1.09618 1.17469 0.78512 0.86628 0.82291 1.90887 1.47768 1.14515 1.84278 1.20190 1.05443 0.92879 0.90961 1.21672 0.94277 0.92640 0.99180 1.20649 1.03939 1.01717 0.91261 1.21684 0.99226 0.82157 1.00819 1.42942 1.42323 1.08388 1.10974 1.22695 1.16024 0.90147 0.94015 1.22716 1.00277 0.97760 0.91459 1.70835 1.21477 1.13221 1.12240 1.21536 1.01733 0.88363 0.87717 0.92575 0.91769 0.91282 0.94963 0.89302 0.83351 0.93867 0.89407 0.77463 0.91871 0.77136 0.83429 0.82417 0.81711 0.79817 0.80060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 2 C 0.15 1.69 2.88 -67.93 -0.20 1.50 16 3 H 0.10 1.45 7.58 -51.93 -0.39 1.05 16 4 C 0.05 0.57 5.30 -3.82 -0.02 0.55 16 5 N -0.67 -10.39 6.12 -115.05 -0.70 -11.10 16 6 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 7 C 0.44 10.23 7.82 -10.98 -0.09 10.14 16 8 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 9 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 10 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 14 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 18 N -0.72 -8.16 4.31 -54.94 -0.24 -8.40 16 19 C 0.57 8.17 7.74 -12.61 -0.10 8.08 16 20 O -0.50 -9.27 15.86 5.24 0.08 -9.19 16 21 C -0.09 -1.13 6.06 -102.64 -0.62 -1.75 16 22 C -0.05 -0.46 9.63 -38.76 -0.37 -0.83 16 23 C -0.15 -1.01 9.91 -40.13 -0.40 -1.40 16 24 C 0.08 0.59 10.88 -16.75 -0.18 0.41 16 25 N -0.37 -3.92 2.94 -61.09 -0.18 -4.10 16 26 C -0.10 -0.90 11.76 -16.41 -0.19 -1.09 16 27 C 0.03 0.32 11.83 -17.89 -0.21 0.10 16 28 N -0.46 -7.25 10.70 -11.32 -0.12 -7.37 16 29 C 0.25 3.59 7.67 -154.13 -1.18 2.41 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.35 5.48 7.28 -39.29 -0.29 5.19 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.39 3.42 6.25 -40.82 -0.26 3.17 16 41 H 0.15 0.85 6.48 -52.48 -0.34 0.51 16 42 H 0.16 0.49 8.06 -52.48 -0.42 0.07 16 43 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -38.69 387.39 -8.83 -47.52 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -5.76 Total: 14.49 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: -3.48 Total: 9.81 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -0.58 Total: -68.71 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.17 Total: -24.86 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.69 -8.83 -47.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669424221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.093 kcal (2) G-P(sol) polarization free energy of solvation -38.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds