Wall clock time and date at job start Wed Apr 1 2020 04:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 N 1.46905 * 109.47019 * 184.99887 * 4 2 1 6 6 C 1.46901 * 111.00168 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.46911 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00122 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99752 * 180.02562 * 7 6 5 10 10 C 1.37100 * 119.99761 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00039 * 0.02562 * 10 9 7 12 12 C 1.38947 * 119.99520 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00358 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99809 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47177 * 89.99939 * 14 12 10 16 16 H 1.48501 * 109.47034 * 210.00179 * 14 12 10 17 17 H 1.48496 * 109.46939 * 330.00091 * 14 12 10 18 18 N 1.46504 * 109.46883 * 120.00066 * 2 1 3 19 19 C 1.34779 * 119.99783 * 274.99286 * 18 2 1 20 20 O 1.21640 * 119.99996 * 0.02562 * 19 18 2 21 21 C 1.47226 * 119.99902 * 180.02562 * 19 18 2 22 22 C 1.38936 * 120.86071 * 0.02562 * 21 19 18 23 23 C 1.39736 * 119.29589 * 179.97438 * 22 21 19 24 24 C 1.35118 * 121.14294 * 0.02562 * 23 22 21 25 25 N 1.36148 * 121.71676 * 359.97136 * 24 23 22 26 26 C 1.37007 * 132.64189 * 180.02562 * 25 24 23 27 27 C 1.34950 * 107.15233 * 180.02562 * 26 25 24 28 28 N 1.33742 * 108.60584 * 359.97438 * 27 26 25 29 29 C 1.31983 * 109.17290 * 359.73805 * 28 27 26 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 33 33 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 34 34 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 35 35 H 1.00900 * 110.99539 * 56.04548 * 5 4 2 36 36 H 1.08996 * 109.47029 * 299.99968 * 6 5 4 37 37 H 1.09002 * 109.46992 * 60.00059 * 6 5 4 38 38 H 0.97003 * 119.99807 * 0.02562 * 9 7 6 39 39 H 0.97003 * 120.00338 * 179.97438 * 13 12 10 40 40 H 0.97003 * 120.00173 * 95.00359 * 18 2 1 41 41 H 1.08009 * 120.35449 * 0.02562 * 22 21 19 42 42 H 1.08003 * 119.43445 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.13914 * 179.97438 * 24 23 22 44 44 H 1.08001 * 126.41850 * 359.96443 * 26 25 24 45 45 H 1.08002 * 125.69740 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.5040 -0.8268 -1.1905 6 6 4.0303 -1.5151 -2.3768 7 6 5.5316 -1.6047 -2.2807 8 8 6.1066 -1.1404 -1.3189 9 7 6.2354 -2.1998 -3.2641 10 6 7.6012 -2.2808 -3.1770 11 1 8.1131 -1.8681 -2.3202 12 6 8.3267 -2.8948 -4.1905 13 7 7.7038 -3.3974 -5.2328 14 14 10.1876 -3.0059 -4.0716 15 1 10.5652 -4.2638 -3.3786 16 1 10.7722 -2.9981 -5.4367 17 1 10.7048 -1.8440 -3.3050 18 7 2.0184 -0.6906 1.1962 19 6 2.1472 -0.0182 2.3571 20 8 1.8576 1.1619 2.4118 21 6 2.6384 -0.7121 3.5591 22 6 2.9748 -2.0595 3.5168 23 6 3.4382 -2.6853 4.6770 24 6 3.5636 -2.0031 5.8365 25 7 3.2467 -0.6821 5.9277 26 6 3.2860 0.2124 6.9647 27 6 2.8548 1.3976 6.4846 28 7 2.5560 1.2500 5.1893 29 6 2.7910 0.0020 4.8297 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -1.7199 -1.2951 34 1 1.7517 -0.1584 -2.1370 35 1 3.7995 -1.2884 -0.3433 36 1 3.6095 -2.5191 -2.4308 37 1 3.7557 -0.9573 -3.2721 38 1 5.7756 -2.5701 -4.0338 39 1 8.2103 -3.8257 -5.9405 40 1 2.2491 -1.6318 1.1527 41 1 2.8799 -2.6171 2.5966 42 1 3.7000 -3.7327 4.6467 43 1 3.9246 -2.5191 6.7139 44 1 3.6019 0.0071 7.9769 45 1 2.7667 2.3127 7.0514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669424221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:41 Heat of formation + Delta-G solvation = 1.196404 kcal Electronic energy + Delta-G solvation = -29067.582338 eV Core-core repulsion = 24892.558573 eV Total energy + Delta-G solvation = -4175.023765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.68493 -40.90667 -40.10223 -38.21272 -37.80847 -36.01934 -35.12645 -34.59460 -33.24599 -32.18975 -31.08358 -29.65108 -28.95910 -26.71460 -25.85503 -24.62733 -23.66635 -23.23604 -22.19144 -21.55448 -21.06672 -19.91313 -19.19677 -18.46819 -17.90705 -17.47520 -17.13308 -16.95682 -16.83643 -16.36057 -16.30133 -16.10827 -15.77362 -15.39311 -15.26101 -15.05974 -14.99765 -14.50143 -14.32038 -14.04082 -13.58043 -13.52174 -13.35642 -13.14673 -13.08135 -13.01697 -12.87545 -12.78340 -12.65422 -12.40975 -12.12961 -11.97202 -11.87611 -11.49921 -11.17229 -10.86170 -10.35997 -10.14314 -10.00310 -9.82561 -9.29302 -8.93614 -8.46034 -5.94389 -0.69602 0.29344 1.37982 1.42248 1.50270 1.54679 1.71721 1.94885 2.06904 2.15583 2.29620 2.63227 2.90358 3.11250 3.21624 3.42754 3.53100 3.70467 3.83040 3.84528 3.92284 4.21194 4.28639 4.34080 4.40186 4.48027 4.52233 4.55978 4.62016 4.69341 4.69972 4.77708 4.79621 4.92417 4.99880 5.10147 5.28255 5.39950 5.41767 5.50708 5.61772 5.88731 6.05980 6.10845 6.39934 6.49599 6.61669 6.94450 7.14038 7.23041 7.57977 8.13859 8.71214 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011485 B = 0.002349 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.318829 B =11914.921486 C =13530.765120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.062 0.938 4 C 0.059 3.941 5 N -0.690 5.690 6 C 0.066 3.934 7 C 0.436 3.564 8 O -0.626 6.626 9 N -0.572 5.572 10 C -0.333 4.333 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.990 3.010 15 H -0.268 1.268 16 H -0.271 1.271 17 H -0.276 1.276 18 N -0.706 5.706 19 C 0.561 3.439 20 O -0.561 6.561 21 C -0.146 4.146 22 C -0.025 4.025 23 C -0.160 4.160 24 C 0.090 3.910 25 N -0.378 5.378 26 C -0.081 4.081 27 C -0.005 4.005 28 N -0.527 5.527 29 C 0.221 3.779 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.343 0.657 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.408 0.592 41 H 0.175 0.825 42 H 0.203 0.797 43 H 0.214 0.786 44 H 0.232 0.768 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.896 -5.792 19.631 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.080 0.920 4 C -0.070 4.070 5 N -0.324 5.324 6 C -0.066 4.066 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.210 5.210 10 C -0.463 4.463 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.814 3.186 15 H -0.194 1.194 16 H -0.196 1.196 17 H -0.201 1.201 18 N -0.360 5.360 19 C 0.348 3.652 20 O -0.439 6.439 21 C -0.152 4.152 22 C -0.049 4.049 23 C -0.180 4.180 24 C -0.031 4.031 25 N -0.051 5.051 26 C -0.210 4.210 27 C -0.154 4.154 28 N -0.247 5.247 29 C -0.026 4.026 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.162 0.838 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.246 0.754 41 H 0.192 0.808 42 H 0.220 0.780 43 H 0.230 0.770 44 H 0.248 0.752 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -14.841 -3.454 19.427 24.690 hybrid contribution 0.965 -1.499 0.171 1.791 sum -13.876 -4.953 19.598 24.518 Atomic orbital electron populations 1.22060 0.93037 1.03376 1.02516 1.21012 0.94823 0.96857 0.83020 0.92005 1.22354 0.86128 1.00797 0.97742 1.59944 1.10335 1.57869 1.04245 1.21555 0.90072 0.99320 0.95684 1.20970 0.90807 0.82080 0.83808 1.90510 1.72904 1.52709 1.35082 1.41924 1.06793 1.51692 1.20576 1.19628 0.83174 1.36816 1.06633 0.90568 1.25994 1.04725 0.95894 0.94540 1.69661 1.38216 1.38505 1.09605 0.84968 0.77065 0.78722 0.77835 1.19353 1.19615 1.20118 1.45738 1.67272 1.14169 1.08780 1.17915 0.77615 0.86157 0.83476 1.90835 1.50777 1.17035 1.85302 1.20158 1.10114 0.94692 0.90210 1.22160 0.90686 0.90877 1.01180 1.21236 1.03086 1.03588 0.90107 1.22654 0.96944 0.80677 1.02868 1.43221 1.42024 1.09687 1.10198 1.23375 1.13527 0.88921 0.95129 1.23218 1.01539 0.99906 0.90690 1.70710 1.23931 1.15310 1.14702 1.21775 1.02899 0.88660 0.89282 0.90256 0.94124 0.89739 0.91572 0.88178 0.83756 0.90490 0.87702 0.76858 0.91296 0.75445 0.80789 0.78048 0.76955 0.75206 0.78333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.48 71.98 0.68 -2.10 16 2 C 0.15 3.43 2.88 44.99 0.13 3.56 16 3 H 0.06 1.93 7.58 -2.39 -0.02 1.92 16 4 C 0.06 1.20 5.30 86.30 0.46 1.65 16 5 N -0.69 -20.67 6.12 -517.92 -3.17 -23.84 16 6 C 0.07 2.09 6.17 85.56 0.53 2.62 16 7 C 0.44 20.23 7.82 87.66 0.69 20.92 16 8 O -0.63 -34.59 15.78 -3.07 -0.05 -34.64 16 9 N -0.57 -28.72 5.29 -306.98 -1.62 -30.34 16 10 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 11 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 12 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 13 N -0.92 -48.77 13.05 21.66 0.28 -48.48 16 14 Si 0.99 42.54 29.55 68.60 2.03 44.56 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 17 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 18 N -0.71 -16.29 4.31 -445.97 -1.92 -18.22 16 19 C 0.56 17.52 7.74 86.60 0.67 18.19 16 20 O -0.56 -23.21 15.86 -4.16 -0.07 -23.27 16 21 C -0.15 -3.87 6.06 -18.58 -0.11 -3.98 16 22 C -0.03 -0.39 9.63 22.80 0.22 -0.17 16 23 C -0.16 -1.49 9.91 21.91 0.22 -1.27 16 24 C 0.09 0.95 10.88 83.30 0.91 1.86 16 25 N -0.38 -7.51 2.94 -347.20 -1.02 -8.54 16 26 C -0.08 -1.36 11.76 83.13 0.98 -0.38 16 27 C -0.01 -0.13 11.83 83.65 0.99 0.86 16 28 N -0.53 -18.21 10.70 -189.73 -2.03 -20.24 16 29 C 0.22 6.62 7.67 135.76 1.04 7.66 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.34 10.56 7.28 -89.69 -0.65 9.91 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 39 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 40 H 0.41 6.61 6.25 -92.71 -0.58 6.03 16 41 H 0.17 1.52 6.48 -2.91 -0.02 1.50 16 42 H 0.20 0.09 8.06 -2.91 -0.02 0.07 16 43 H 0.21 0.10 8.06 -2.91 -0.02 0.07 16 44 H 0.23 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.20 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -93.02 387.39 0.20 -92.82 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: -0.90 Total: 38.84 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: 8.67 Total: 31.35 kcal Atomic # 7 Polarization: -140.18 SS G_CDS: -9.48 Total: -149.66 kcal Atomic # 8 Polarization: -57.80 SS G_CDS: -0.11 Total: -57.91 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -93.02 0.20 -92.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669424221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.016 kcal (2) G-P(sol) polarization free energy of solvation -93.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds