Wall clock time and date at job start Wed Apr 1 2020 02:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 110.77861 * 2 1 4 4 C 1.54324 * 110.72231 * 236.76372 * 2 1 3 5 5 N 1.47017 * 107.27277 * 263.82594 * 4 2 1 6 6 C 1.34777 * 125.65341 * 181.01725 * 5 4 2 7 7 O 1.21683 * 120.00207 * 180.02562 * 6 5 4 8 8 C 1.46790 * 119.99629 * 359.75247 * 6 5 4 9 9 C 1.36410 * 125.84834 * 180.27516 * 8 6 5 10 10 C 1.41275 * 107.03265 * 179.97438 * 9 8 6 11 11 C 1.43198 * 126.45484 * 180.02562 * 10 9 8 12 12 N 8.94245 * 111.06040 * 239.47910 * 2 1 3 13 13 C 1.38176 * 107.09311 * 359.97438 * 10 9 8 14 14 N 1.34432 * 108.38436 * 359.76596 * 13 10 9 15 15 H 0.96994 * 125.40714 * 180.22562 * 14 13 10 16 16 C 1.47435 * 108.70127 * 1.28425 * 5 4 2 17 17 C 1.55129 * 104.72099 * 335.55384 * 16 5 4 18 18 H 1.08994 * 111.22570 * 279.17654 * 17 16 5 19 19 N 1.46897 * 110.90562 * 155.27350 * 17 16 5 20 20 C 1.46901 * 110.99997 * 92.97467 * 19 17 16 21 21 C 1.50700 * 109.47330 * 179.97438 * 20 19 17 22 22 O 1.21289 * 119.99848 * 0.02562 * 21 20 19 23 23 N 1.34774 * 119.99837 * 179.97438 * 21 20 19 24 24 C 1.37100 * 119.99723 * 180.02562 * 23 21 20 25 25 H 1.08003 * 120.00162 * 359.97438 * 24 23 21 26 26 C 1.38948 * 120.00118 * 180.02562 * 24 23 21 27 27 N 1.31414 * 119.99749 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 120.00070 * 179.97438 * 26 24 23 29 29 H 1.48506 * 109.46857 * 60.00156 * 28 26 24 30 30 H 1.48508 * 109.46983 * 179.97438 * 28 26 24 31 31 H 1.48500 * 109.47275 * 299.99879 * 28 26 24 32 32 H 1.09004 * 109.47078 * 181.78846 * 1 2 3 33 33 H 1.09000 * 109.47201 * 301.78013 * 1 2 3 34 34 H 1.08998 * 109.47768 * 61.78951 * 1 2 3 35 35 H 1.09000 * 109.88923 * 144.40796 * 4 2 1 36 36 H 1.09004 * 109.87843 * 23.24042 * 4 2 1 37 37 H 1.07996 * 126.48097 * 359.97438 * 9 8 6 38 38 H 1.08004 * 125.81181 * 180.02562 * 13 10 9 39 39 H 1.08999 * 110.36625 * 94.48143 * 16 5 4 40 40 H 1.08994 * 110.36368 * 216.80270 * 16 5 4 41 41 H 1.00895 * 111.00209 * 329.02206 * 19 17 16 42 42 H 1.08998 * 109.46880 * 300.00168 * 20 19 17 43 43 H 1.09009 * 109.46832 * 60.00019 * 20 19 17 44 44 H 0.96994 * 120.00268 * 0.02562 * 23 21 20 45 45 H 0.96999 * 119.99844 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 2.3716 -2.1530 -0.7391 6 6 2.8850 -3.1477 -1.4898 7 8 3.0892 -4.2404 -0.9948 8 6 3.1921 -2.9146 -2.9062 9 6 3.7071 -3.8328 -3.7736 10 6 3.8430 -3.1899 -5.0243 11 6 4.3451 -3.7743 -6.2313 12 7 4.7434 -4.2381 -7.1888 13 6 3.3990 -1.8913 -4.8638 14 7 3.0034 -1.7330 -3.5887 15 1 2.6448 -0.9157 -3.2089 16 6 2.0076 -2.2524 0.6861 17 6 2.0790 -0.7954 1.2138 18 1 3.1058 -0.5067 1.4378 19 7 1.2173 -0.6213 2.3907 20 6 1.9721 -0.8371 3.6323 21 6 1.0575 -0.6498 4.8153 22 8 -0.1085 -0.3650 4.6412 23 7 1.5350 -0.7998 6.0666 24 6 0.7028 -0.6299 7.1428 25 1 -0.3353 -0.3755 6.9878 26 6 1.1951 -0.7839 8.4330 27 7 2.4587 -1.0920 8.6216 28 14 0.0614 -0.5517 9.8993 29 1 -1.0543 -1.5289 9.8220 30 1 0.8243 -0.7706 11.1545 31 1 -0.4874 0.8281 9.8872 32 1 -0.3633 -1.0272 0.0321 33 1 -0.3633 0.5412 0.8736 34 1 -0.3634 0.4858 -0.9055 35 1 2.9867 -0.3206 -1.5777 36 1 1.3261 -0.8255 -1.9977 37 1 3.9625 -4.8574 -3.5471 38 1 3.3702 -1.1337 -5.6329 39 1 0.9975 -2.6479 0.7929 40 1 2.7209 -2.8830 1.2167 41 1 0.4149 -1.2311 2.3447 42 1 2.3753 -1.8498 3.6410 43 1 2.7908 -0.1196 3.6892 44 1 2.4674 -1.0279 6.2059 45 1 2.8023 -1.1999 9.5223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673861983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:16 Heat of formation + Delta-G solvation = 20.243983 kcal Electronic energy + Delta-G solvation = -28790.284593 eV Core-core repulsion = 24616.086793 eV Total energy + Delta-G solvation = -4174.197800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -42.21863 -40.28798 -38.56586 -37.95217 -36.74617 -35.00402 -33.89441 -32.55399 -32.07830 -31.26521 -30.48456 -28.91865 -27.08013 -26.35860 -24.46565 -23.60372 -23.29887 -21.96621 -20.84398 -20.10442 -19.42232 -18.73053 -17.96645 -17.06410 -16.73675 -16.55625 -16.20503 -15.74583 -15.35779 -15.19102 -14.76550 -14.52747 -14.45406 -14.24489 -13.93418 -13.86629 -13.78327 -13.49375 -13.38348 -13.20762 -13.11990 -12.98404 -12.78756 -12.37452 -12.30633 -12.25210 -11.79203 -11.57239 -11.41329 -11.13462 -11.03908 -10.97723 -10.49948 -10.47542 -10.25647 -9.69324 -9.54731 -9.21551 -8.89934 -8.57444 -8.22069 -8.01501 -6.46039 -3.87263 0.87389 1.28716 2.20150 2.45293 2.48240 2.82368 3.17015 3.23516 3.26459 3.27394 3.66777 3.83706 3.88637 3.99858 4.08719 4.21091 4.32610 4.37905 4.47296 4.66715 4.76313 4.82339 4.87675 5.04082 5.06867 5.20783 5.25377 5.36055 5.38940 5.46365 5.53981 5.58844 5.73523 5.78592 5.86340 5.89383 5.93310 6.09432 6.18469 6.25780 6.55236 6.99063 7.00872 7.26953 7.43075 7.50798 7.67793 8.00633 8.55398 9.12829 9.48627 9.99304 10.71361 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.029439 B = 0.001728 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.893392 B =16201.664653 C =16816.324654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.097 0.903 4 C 0.086 3.914 5 N -0.614 5.614 6 C 0.602 3.398 7 O -0.520 6.520 8 C -0.043 4.043 9 C -0.056 4.056 10 C -0.133 4.133 11 C 0.290 3.710 12 N -0.434 5.434 13 C 0.093 3.907 14 N -0.527 5.527 15 H 0.427 0.573 16 C 0.078 3.922 17 C 0.080 3.920 18 H 0.096 0.904 19 N -0.648 5.648 20 C 0.047 3.953 21 C 0.439 3.561 22 O -0.584 6.584 23 N -0.561 5.561 24 C -0.302 4.302 25 H 0.103 0.897 26 C 0.024 3.976 27 N -0.900 5.900 28 Si 0.931 3.069 29 H -0.274 1.274 30 H -0.284 1.284 31 H -0.273 1.273 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.161 0.839 38 H 0.189 0.811 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.354 0.646 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 2.809 -24.265 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.115 0.885 4 C -0.037 4.037 5 N -0.348 5.348 6 C 0.391 3.609 7 O -0.396 6.396 8 C -0.154 4.154 9 C -0.083 4.083 10 C -0.144 4.144 11 C -0.025 4.025 12 N -0.110 5.110 13 C -0.052 4.052 14 N -0.127 5.127 15 H 0.271 0.729 16 C -0.047 4.047 17 C -0.032 4.032 18 H 0.114 0.886 19 N -0.279 5.279 20 C -0.085 4.085 21 C 0.224 3.776 22 O -0.469 6.469 23 N -0.197 5.197 24 C -0.431 4.431 25 H 0.121 0.879 26 C -0.178 4.178 27 N -0.541 5.541 28 Si 0.758 3.242 29 H -0.199 1.199 30 H -0.210 1.210 31 H -0.199 1.199 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.179 0.821 38 H 0.206 0.794 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.175 0.825 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.226 0.774 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.956 2.397 -25.226 25.512 hybrid contribution -0.047 -0.400 1.328 1.388 sum 2.909 1.997 -23.898 24.157 Atomic orbital electron populations 1.21723 0.93085 1.02311 1.02838 1.22187 0.97590 0.99187 0.91757 0.88479 1.22476 0.99566 0.82792 0.98894 1.48237 1.63308 1.11232 1.12024 1.16661 0.77340 0.83479 0.83443 1.90902 1.53467 1.23121 1.72067 1.19998 1.14636 0.87391 0.93365 1.21072 0.98205 0.99553 0.89466 1.15394 1.15061 0.94274 0.89653 1.24633 0.92609 0.93401 0.91885 1.81295 1.10818 1.08037 1.10898 1.22339 0.98828 0.97182 0.86843 1.42519 1.47953 1.12924 1.09266 0.72868 1.23253 1.01511 0.99683 0.80207 1.22876 0.97899 0.91535 0.90872 0.88596 1.60145 1.08760 1.59884 0.99142 1.21776 0.96710 1.00284 0.89776 1.19731 0.88907 0.84998 0.83919 1.90525 1.17838 1.53286 1.85244 1.41851 1.12605 1.60998 1.04279 1.19654 0.94856 1.44884 0.83748 0.87929 1.25268 0.96447 0.97089 0.99014 1.69601 1.13347 1.47845 1.23334 0.85915 0.79505 0.79080 0.79698 1.19893 1.20957 1.19865 0.92934 0.89754 0.92986 0.91222 0.91026 0.82121 0.79407 0.90659 0.89817 0.82454 0.93511 0.89371 0.77431 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.27 37.15 0.31 -0.80 16 2 C -0.09 -0.60 3.56 -88.79 -0.32 -0.91 16 3 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 4 C 0.09 0.44 4.68 -3.07 -0.01 0.42 16 5 N -0.61 -5.23 3.33 -171.87 -0.57 -5.80 16 6 C 0.60 6.24 7.82 -12.80 -0.10 6.14 16 7 O -0.52 -7.48 17.11 5.20 0.09 -7.40 16 8 C -0.04 -0.32 6.83 -82.41 -0.56 -0.88 16 9 C -0.06 -0.43 10.54 -39.09 -0.41 -0.84 16 10 C -0.13 -0.86 5.97 -106.84 -0.64 -1.49 16 11 C 0.29 2.49 15.83 -22.47 -0.36 2.14 16 12 N -0.43 -4.85 18.54 41.84 0.78 -4.07 16 13 C 0.09 0.31 11.90 -16.44 -0.20 0.11 16 14 N -0.53 -2.03 5.54 -9.27 -0.05 -2.08 16 15 H 0.43 0.66 4.83 -40.82 -0.20 0.46 16 16 C 0.08 0.77 6.18 -2.40 -0.01 0.75 16 17 C 0.08 0.75 3.19 -65.45 -0.21 0.54 16 18 H 0.10 0.87 7.83 -51.93 -0.41 0.46 16 19 N -0.65 -8.52 4.95 -105.60 -0.52 -9.05 16 20 C 0.05 0.73 6.03 -4.98 -0.03 0.70 16 21 C 0.44 9.69 7.82 -10.99 -0.09 9.60 16 22 O -0.58 -14.91 15.78 5.55 0.09 -14.82 16 23 N -0.56 -13.62 5.29 -10.96 -0.06 -13.68 16 24 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 25 H 0.10 2.91 7.16 -52.48 -0.38 2.53 16 26 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 27 N -0.90 -23.94 13.05 55.50 0.72 -23.22 16 28 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 29 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 30 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 31 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 32 H 0.05 0.44 7.42 -51.93 -0.39 0.06 16 33 H 0.08 0.87 7.65 -51.93 -0.40 0.47 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.21 7.10 -51.93 -0.37 -0.16 16 36 H 0.07 0.24 6.90 -51.93 -0.36 -0.12 16 37 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.19 -0.07 8.06 -52.48 -0.42 -0.49 16 39 H 0.08 0.78 7.31 -51.93 -0.38 0.40 16 40 H 0.08 0.94 8.03 -51.93 -0.42 0.53 16 41 H 0.35 4.96 7.52 -39.29 -0.30 4.66 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.25 8.09 -51.92 -0.42 0.83 16 44 H 0.39 9.12 7.90 -40.82 -0.32 8.80 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -34.74 384.83 -7.19 -41.93 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.57 Total: 9.14 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -2.87 Total: 7.68 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.30 Total: -57.89 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.18 Total: -22.22 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.74 -7.19 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673861983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.172 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds