Wall clock time and date at job start Wed Apr 1 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 110.77861 * 2 1 4 4 C 1.54324 * 110.72231 * 236.76372 * 2 1 3 5 5 N 1.47017 * 107.27277 * 263.82594 * 4 2 1 6 6 C 1.34777 * 125.65341 * 181.01725 * 5 4 2 7 7 O 1.21683 * 120.00207 * 180.02562 * 6 5 4 8 8 C 1.46790 * 119.99629 * 359.75247 * 6 5 4 9 9 C 1.36410 * 125.84834 * 180.27516 * 8 6 5 10 10 C 1.41275 * 107.03265 * 179.97438 * 9 8 6 11 11 C 1.43198 * 126.45484 * 180.02562 * 10 9 8 12 12 N 8.94245 * 111.06040 * 239.47910 * 2 1 3 13 13 C 1.38176 * 107.09311 * 359.97438 * 10 9 8 14 14 N 1.34432 * 108.38436 * 359.76596 * 13 10 9 15 15 H 0.96994 * 125.40714 * 180.22562 * 14 13 10 16 16 C 1.47435 * 108.70127 * 1.28425 * 5 4 2 17 17 C 1.55129 * 104.72099 * 335.55384 * 16 5 4 18 18 H 1.08994 * 111.22570 * 279.17654 * 17 16 5 19 19 N 1.46897 * 110.90562 * 155.27350 * 17 16 5 20 20 C 1.46901 * 110.99997 * 92.97467 * 19 17 16 21 21 C 1.50700 * 109.47330 * 179.97438 * 20 19 17 22 22 O 1.21289 * 119.99848 * 0.02562 * 21 20 19 23 23 N 1.34774 * 119.99837 * 179.97438 * 21 20 19 24 24 C 1.37100 * 119.99723 * 180.02562 * 23 21 20 25 25 H 1.08003 * 120.00162 * 359.97438 * 24 23 21 26 26 C 1.38948 * 120.00118 * 180.02562 * 24 23 21 27 27 N 1.31414 * 119.99749 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 120.00070 * 179.97438 * 26 24 23 29 29 H 1.48506 * 109.46857 * 60.00156 * 28 26 24 30 30 H 1.48508 * 109.46983 * 179.97438 * 28 26 24 31 31 H 1.48500 * 109.47275 * 299.99879 * 28 26 24 32 32 H 1.09004 * 109.47078 * 181.78846 * 1 2 3 33 33 H 1.09000 * 109.47201 * 301.78013 * 1 2 3 34 34 H 1.08998 * 109.47768 * 61.78951 * 1 2 3 35 35 H 1.09000 * 109.88923 * 144.40796 * 4 2 1 36 36 H 1.09004 * 109.87843 * 23.24042 * 4 2 1 37 37 H 1.07996 * 126.48097 * 359.97438 * 9 8 6 38 38 H 1.08004 * 125.81181 * 180.02562 * 13 10 9 39 39 H 1.08999 * 110.36625 * 94.48143 * 16 5 4 40 40 H 1.08994 * 110.36368 * 216.80270 * 16 5 4 41 41 H 1.00895 * 111.00209 * 329.02206 * 19 17 16 42 42 H 1.08998 * 109.46880 * 300.00168 * 20 19 17 43 43 H 1.09009 * 109.46832 * 60.00019 * 20 19 17 44 44 H 0.96994 * 120.00268 * 0.02562 * 23 21 20 45 45 H 0.96999 * 119.99844 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 2.3716 -2.1530 -0.7391 6 6 2.8850 -3.1477 -1.4898 7 8 3.0892 -4.2404 -0.9948 8 6 3.1921 -2.9146 -2.9062 9 6 3.7071 -3.8328 -3.7736 10 6 3.8430 -3.1899 -5.0243 11 6 4.3451 -3.7743 -6.2313 12 7 4.7434 -4.2381 -7.1888 13 6 3.3990 -1.8913 -4.8638 14 7 3.0034 -1.7330 -3.5887 15 1 2.6448 -0.9157 -3.2089 16 6 2.0076 -2.2524 0.6861 17 6 2.0790 -0.7954 1.2138 18 1 3.1058 -0.5067 1.4378 19 7 1.2173 -0.6213 2.3907 20 6 1.9721 -0.8371 3.6323 21 6 1.0575 -0.6498 4.8153 22 8 -0.1085 -0.3650 4.6412 23 7 1.5350 -0.7998 6.0666 24 6 0.7028 -0.6299 7.1428 25 1 -0.3353 -0.3755 6.9878 26 6 1.1951 -0.7839 8.4330 27 7 2.4587 -1.0920 8.6216 28 14 0.0614 -0.5517 9.8993 29 1 -1.0543 -1.5289 9.8220 30 1 0.8243 -0.7706 11.1545 31 1 -0.4874 0.8281 9.8872 32 1 -0.3633 -1.0272 0.0321 33 1 -0.3633 0.5412 0.8736 34 1 -0.3634 0.4858 -0.9055 35 1 2.9867 -0.3206 -1.5777 36 1 1.3261 -0.8255 -1.9977 37 1 3.9625 -4.8574 -3.5471 38 1 3.3702 -1.1337 -5.6329 39 1 0.9975 -2.6479 0.7929 40 1 2.7209 -2.8830 1.2167 41 1 0.4149 -1.2311 2.3447 42 1 2.3753 -1.8498 3.6410 43 1 2.7908 -0.1196 3.6892 44 1 2.4674 -1.0279 6.2059 45 1 2.8023 -1.1999 9.5223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673861983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:13 Heat of formation + Delta-G solvation = -5.981490 kcal Electronic energy + Delta-G solvation = -28791.421815 eV Core-core repulsion = 24616.086793 eV Total energy + Delta-G solvation = -4175.335022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -42.71771 -40.99886 -40.06749 -39.02685 -37.44769 -36.24033 -35.60713 -33.41611 -33.14336 -32.59393 -31.08651 -29.79749 -27.80111 -27.63742 -25.90263 -24.49760 -23.86720 -22.55589 -21.34177 -21.14967 -20.79055 -19.92652 -19.38000 -17.79144 -17.57426 -17.45137 -17.05564 -16.96684 -16.40643 -16.13529 -16.07610 -15.73220 -15.39032 -15.22531 -15.00232 -14.72554 -14.40819 -14.31369 -14.21916 -14.11385 -14.06419 -13.76300 -13.59462 -13.56166 -13.41005 -13.13663 -13.03209 -12.93523 -12.82390 -12.41945 -12.14399 -12.11700 -11.80827 -11.60507 -11.48420 -11.30649 -10.32230 -10.21646 -10.00290 -9.90117 -9.40949 -9.32120 -8.45492 -5.94155 0.36416 0.75381 1.40693 1.42860 1.53368 1.59566 1.82389 2.01771 2.07292 2.14261 2.30113 2.66842 2.89222 3.12385 3.22089 3.35399 3.44473 3.61140 3.76376 3.96401 4.07504 4.13558 4.16521 4.22789 4.32721 4.37936 4.47282 4.55949 4.58814 4.62890 4.69748 4.82119 4.86542 4.90521 4.98558 5.19133 5.32882 5.34357 5.41953 5.57501 5.60277 5.87849 6.08618 6.27126 6.31727 6.34902 6.60979 6.65264 6.94236 7.13796 7.57997 8.12764 8.71477 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.029439 B = 0.001728 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.893392 B =16201.664653 C =16816.324654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 H 0.117 0.883 4 C 0.084 3.916 5 N -0.610 5.610 6 C 0.598 3.402 7 O -0.576 6.576 8 C -0.058 4.058 9 C -0.063 4.063 10 C -0.160 4.160 11 C 0.315 3.685 12 N -0.489 5.489 13 C 0.144 3.856 14 N -0.509 5.509 15 H 0.441 0.559 16 C 0.079 3.921 17 C 0.082 3.918 18 H 0.106 0.894 19 N -0.654 5.654 20 C 0.062 3.938 21 C 0.438 3.562 22 O -0.621 6.621 23 N -0.574 5.574 24 C -0.334 4.334 25 H 0.080 0.920 26 C -0.012 4.012 27 N -0.920 5.920 28 Si 0.992 3.008 29 H -0.273 1.273 30 H -0.272 1.272 31 H -0.271 1.271 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.146 0.854 38 H 0.239 0.761 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.347 0.653 42 H 0.062 0.938 43 H 0.110 0.890 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 5.255 -26.136 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 H 0.136 0.864 4 C -0.038 4.038 5 N -0.343 5.343 6 C 0.389 3.611 7 O -0.456 6.456 8 C -0.169 4.169 9 C -0.091 4.091 10 C -0.170 4.170 11 C 0.001 3.999 12 N -0.166 5.166 13 C -0.003 4.003 14 N -0.110 5.110 15 H 0.289 0.711 16 C -0.046 4.046 17 C -0.030 4.030 18 H 0.124 0.876 19 N -0.285 5.285 20 C -0.071 4.071 21 C 0.226 3.774 22 O -0.508 6.508 23 N -0.211 5.211 24 C -0.464 4.464 25 H 0.098 0.902 26 C -0.212 4.212 27 N -0.561 5.561 28 Si 0.815 3.185 29 H -0.198 1.198 30 H -0.197 1.197 31 H -0.196 1.196 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.164 0.836 38 H 0.255 0.745 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.167 0.833 42 H 0.080 0.920 43 H 0.128 0.872 44 H 0.230 0.770 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.244 4.893 -27.107 27.735 hybrid contribution -0.178 -1.126 1.846 2.170 sum 3.066 3.767 -25.261 25.723 Atomic orbital electron populations 1.21684 0.93929 1.01366 1.02759 1.22182 0.96795 1.00054 0.90834 0.86447 1.22747 1.01916 0.80480 0.98664 1.48246 1.62416 1.12421 1.11214 1.17029 0.76708 0.82925 0.84471 1.90868 1.55990 1.25375 1.73353 1.19447 1.16413 0.88988 0.92028 1.21081 0.98169 0.99401 0.90446 1.15399 1.17511 0.95829 0.88286 1.24862 0.91262 0.92208 0.91581 1.81317 1.13016 1.09544 1.12717 1.23039 0.94007 0.96366 0.86853 1.42443 1.47188 1.12236 1.09100 0.71083 1.23087 1.00379 0.99723 0.81394 1.22965 0.97963 0.91697 0.90331 0.87555 1.60191 1.08990 1.59879 0.99421 1.21632 0.95608 1.01794 0.88036 1.20859 0.89232 0.82517 0.84825 1.90494 1.19970 1.54324 1.86004 1.41936 1.12517 1.61949 1.04696 1.19637 0.94560 1.46786 0.85427 0.90197 1.26019 0.97893 0.96333 1.00969 1.69666 1.14362 1.47972 1.24103 0.85008 0.77768 0.78904 0.76781 1.19807 1.19667 1.19601 0.94145 0.92676 0.90399 0.87830 0.88363 0.83599 0.74488 0.91709 0.91798 0.83305 0.91964 0.87214 0.77027 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.27 71.98 0.60 -1.28 16 2 C -0.08 -0.82 3.56 -9.61 -0.03 -0.85 16 3 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 4 C 0.08 0.50 4.68 86.73 0.41 0.90 16 5 N -0.61 -9.34 3.33 -815.91 -2.71 -12.05 16 6 C 0.60 12.01 7.82 86.48 0.68 12.69 16 7 O -0.58 -17.36 17.11 -4.29 -0.07 -17.43 16 8 C -0.06 -0.75 6.83 40.02 0.27 -0.48 16 9 C -0.06 -0.92 10.54 22.59 0.24 -0.69 16 10 C -0.16 -1.66 5.97 -21.30 -0.13 -1.79 16 11 C 0.31 5.02 15.83 88.33 1.40 6.42 16 12 N -0.49 -10.75 18.54 19.00 0.35 -10.40 16 13 C 0.14 0.22 11.90 84.28 1.00 1.22 16 14 N -0.51 -1.52 5.54 -183.25 -1.02 -2.54 16 15 H 0.44 -1.28 4.83 -92.71 -0.45 -1.73 16 16 C 0.08 1.54 6.18 86.93 0.54 2.07 16 17 C 0.08 1.39 3.19 46.38 0.15 1.54 16 18 H 0.11 1.64 7.83 -2.39 -0.02 1.62 16 19 N -0.65 -16.83 4.95 -488.01 -2.42 -19.25 16 20 C 0.06 1.88 6.03 85.56 0.52 2.39 16 21 C 0.44 19.68 7.82 87.66 0.69 20.36 16 22 O -0.62 -32.63 15.78 -3.06 -0.05 -32.68 16 23 N -0.57 -28.50 5.29 -306.99 -1.62 -30.13 16 24 C -0.33 -18.61 9.68 84.04 0.81 -17.79 16 25 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 26 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 27 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 28 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 30 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 31 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 32 H 0.04 0.63 7.42 -2.38 -0.02 0.62 16 33 H 0.05 1.09 7.65 -2.39 -0.02 1.07 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.10 0.00 7.10 -2.39 -0.02 -0.02 16 36 H 0.10 0.13 6.90 -2.38 -0.02 0.12 16 37 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 38 H 0.24 -1.93 8.06 -2.91 -0.02 -1.95 16 39 H 0.06 1.39 7.31 -2.39 -0.02 1.37 16 40 H 0.06 1.49 8.03 -2.39 -0.02 1.47 16 41 H 0.35 9.89 7.52 -89.70 -0.67 9.21 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.11 2.92 8.09 -2.38 -0.02 2.90 16 44 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 45 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -81.59 384.83 1.59 -80.00 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -0.77 Total: 24.37 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: 7.60 Total: 24.54 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -7.13 Total: -123.11 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -0.12 Total: -50.11 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -81.59 1.59 -80.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673861983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.015 kcal (2) G-P(sol) polarization free energy of solvation -81.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds