Wall clock time and date at job start Wed Apr 1 2020 04:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47044 * 2 1 4 4 N 1.46503 * 109.46869 * 239.99692 * 2 1 3 5 5 C 1.36933 * 119.99903 * 85.00245 * 4 2 1 6 6 H 1.08002 * 120.00191 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00026 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99933 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00253 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47469 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.46998 * 299.99745 * 9 7 5 12 12 H 1.48497 * 109.47148 * 59.99478 * 9 7 5 13 13 C 1.53001 * 109.46961 * 119.99662 * 2 1 3 14 14 H 1.08994 * 109.51335 * 299.89864 * 13 2 1 15 15 C 1.53297 * 109.51229 * 179.74198 * 13 2 1 16 16 N 1.47145 * 108.38516 * 187.77709 * 15 13 2 17 17 C 1.34778 * 120.98066 * 230.51770 * 16 15 13 18 18 O 1.21688 * 119.99737 * 174.74908 * 17 16 15 19 19 C 1.46809 * 120.00098 * 354.74499 * 17 16 15 20 20 C 1.40413 * 126.54246 * 322.19459 * 19 17 16 21 21 N 1.30971 * 108.76880 * 179.81329 * 20 19 17 22 22 N 1.39711 * 109.48404 * 0.45443 * 21 20 19 23 23 C 1.36358 * 133.18681 * 179.68655 * 22 21 20 24 24 C 1.35302 * 119.80376 * 180.02562 * 23 22 21 25 25 N 1.33234 * 121.27341 * 0.02562 * 24 23 22 26 26 C 1.31417 * 121.08224 * 359.97438 * 25 24 23 27 27 C 1.36818 * 107.97367 * 359.71110 * 22 21 20 28 28 C 1.47153 * 118.04060 * 50.53512 * 16 15 13 29 29 C 1.53296 * 108.38459 * 309.47036 * 28 16 15 30 30 O 1.42961 * 109.22436 * 52.29606 * 29 28 16 31 31 H 1.08993 * 109.47044 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46961 * 300.00375 * 1 2 3 33 33 H 1.09002 * 109.46829 * 59.99875 * 1 2 3 34 34 H 0.96996 * 119.99928 * 265.00230 * 4 2 1 35 35 H 0.97005 * 120.00061 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.68012 * 307.50258 * 15 13 2 37 37 H 1.08999 * 109.67780 * 68.05575 * 15 13 2 38 38 H 1.08003 * 125.61544 * 359.97438 * 20 19 17 39 39 H 1.07994 * 120.09661 * 0.04495 * 23 22 21 40 40 H 1.08007 * 119.35735 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.18017 * 180.02562 * 26 25 24 42 42 H 1.08994 * 109.68289 * 189.74311 * 28 16 15 43 43 H 1.09001 * 109.67746 * 69.18610 * 28 16 15 44 44 H 1.09007 * 109.50857 * 292.37513 * 29 28 16 45 45 H 1.08996 * 109.55513 * 172.24843 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3757 6 1 1.8927 1.0404 -2.4242 7 6 2.6123 -0.6619 -3.5090 8 7 2.9262 -1.9387 -3.4496 9 14 2.7914 0.2700 -5.1179 10 1 3.3002 -0.6484 -6.1681 11 1 1.4692 0.8068 -5.5289 12 1 3.7465 1.3925 -4.9362 13 6 2.0400 -0.7212 1.2493 14 1 1.6786 -0.2068 2.1397 15 6 3.5730 -0.7274 1.2470 16 7 4.0353 -1.5829 2.3514 17 6 4.9544 -1.1417 3.2329 18 8 5.2537 -1.8261 4.1935 19 6 5.5945 0.1645 3.0340 20 6 5.9815 0.7278 1.8075 21 7 6.5137 1.9031 2.0328 22 7 6.5108 2.1604 3.4060 23 6 6.9430 3.2116 4.1593 24 6 6.8041 3.1769 5.5047 25 7 6.2506 2.1305 6.1161 26 6 5.8195 1.0948 5.4316 27 6 5.9422 1.0870 4.0355 28 6 3.4647 -2.9346 2.4647 29 6 1.9371 -2.8210 2.4076 30 8 1.5639 -2.0693 1.2502 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 3.2495 -2.3960 -4.2416 36 1 3.9371 -1.1231 0.2989 37 1 3.9444 0.2875 1.3887 38 1 5.8581 0.2686 0.8377 39 1 7.3946 4.0695 3.6834 40 1 7.1486 4.0136 6.0944 41 1 5.3727 0.2544 5.9422 42 1 3.7645 -3.3813 3.4127 43 1 3.8180 -3.5525 1.6392 44 1 1.5760 -2.3144 3.3027 45 1 1.4990 -3.8174 2.3514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675600852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:58 Heat of formation + Delta-G solvation = 72.227078 kcal Electronic energy + Delta-G solvation = -30919.852066 eV Core-core repulsion = 26747.908423 eV Total energy + Delta-G solvation = -4171.943644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.80650 -40.18575 -38.67939 -38.13466 -35.37940 -34.62219 -33.92608 -32.34053 -31.67132 -30.62295 -29.49592 -28.39405 -27.55838 -25.14233 -24.63134 -24.08894 -23.25831 -22.97545 -21.73454 -19.77768 -19.55851 -18.45436 -17.76370 -17.36120 -16.94661 -16.53995 -16.26832 -16.00930 -15.56666 -15.37903 -15.15297 -14.84805 -14.56228 -14.20665 -14.01591 -13.66128 -13.39907 -13.35335 -13.30105 -13.13690 -12.83771 -12.39059 -11.95128 -11.87582 -11.48656 -11.38538 -11.25082 -11.11495 -10.85404 -10.80695 -10.51282 -10.38246 -10.34500 -10.13214 -10.05618 -9.90924 -9.74794 -9.59923 -8.94960 -8.44226 -8.13732 -6.96282 -5.76789 -3.05739 0.05367 0.49262 1.60675 1.90881 2.77761 2.92854 3.23352 3.42816 3.48163 3.48739 3.72284 3.81783 3.91011 4.00714 4.45064 4.57800 4.58726 4.67057 4.85869 4.95797 5.05057 5.09414 5.12882 5.25072 5.36160 5.38903 5.53777 5.58128 5.65333 5.72366 5.77535 5.90210 5.92148 5.94388 6.12970 6.17056 6.27806 6.37411 6.49409 6.62941 6.74989 6.98220 7.11270 7.20442 7.39167 7.47800 7.68834 8.15527 8.41307 9.53780 10.10322 10.47839 11.45042 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.003500 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.760989 B = 7998.459257 C = 9344.734715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.182 3.818 3 H 0.058 0.942 4 N -0.717 5.717 5 C -0.242 4.242 6 H 0.069 0.931 7 C -0.009 4.009 8 N -0.929 5.929 9 Si 0.903 3.097 10 H -0.292 1.292 11 H -0.287 1.287 12 H -0.286 1.286 13 C 0.078 3.922 14 H 0.054 0.946 15 C 0.074 3.926 16 N -0.604 5.604 17 C 0.600 3.400 18 O -0.549 6.549 19 C -0.268 4.268 20 C 0.120 3.880 21 N -0.296 5.296 22 N -0.250 5.250 23 C 0.070 3.930 24 C 0.022 3.978 25 N -0.444 5.444 26 C 0.165 3.835 27 C 0.087 3.913 28 C 0.079 3.921 29 C 0.049 3.951 30 O -0.358 6.358 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.391 0.609 35 H 0.255 0.745 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.211 0.789 39 H 0.183 0.817 40 H 0.186 0.814 41 H 0.190 0.810 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 6.530 18.147 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.072 3.928 3 H 0.076 0.924 4 N -0.360 5.360 5 C -0.373 4.373 6 H 0.087 0.913 7 C -0.206 4.206 8 N -0.577 5.577 9 Si 0.734 3.266 10 H -0.218 1.218 11 H -0.214 1.214 12 H -0.213 1.213 13 C 0.019 3.981 14 H 0.072 0.928 15 C -0.049 4.049 16 N -0.337 5.337 17 C 0.389 3.611 18 O -0.428 6.428 19 C -0.286 4.286 20 C -0.058 4.058 21 N -0.119 5.119 22 N -0.018 5.018 23 C -0.059 4.059 24 C -0.120 4.120 25 N -0.155 5.155 26 C -0.015 4.015 27 C -0.035 4.035 28 C -0.043 4.043 29 C -0.029 4.029 30 O -0.276 6.276 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.226 0.774 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.228 0.772 39 H 0.200 0.800 40 H 0.203 0.797 41 H 0.207 0.793 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.669 7.423 18.580 20.796 hybrid contribution 0.051 -0.294 -1.520 1.549 sum 5.720 7.129 17.060 19.354 Atomic orbital electron populations 1.22353 0.98518 1.01662 0.99593 1.20253 0.92842 0.94471 0.85268 0.92427 1.42389 1.77673 1.11052 1.04845 1.19175 1.36838 0.93767 0.87502 0.91328 1.24701 1.02150 0.95869 0.97841 1.69658 1.50514 1.08571 1.28913 0.86336 0.77750 0.78628 0.83851 1.21774 1.21365 1.21316 1.22887 0.91853 0.83834 0.99545 0.92781 1.22808 0.96096 0.95464 0.90486 1.47995 1.40745 1.15746 1.29193 1.16906 0.78424 0.83972 0.81799 1.90767 1.64063 1.57770 1.30217 1.19718 1.17968 0.99430 0.91467 1.24509 0.91647 0.90291 0.99377 1.77806 1.28437 1.19073 0.86581 1.46272 1.36158 1.12348 1.06992 1.22682 0.99733 0.91656 0.91868 1.22413 1.00803 0.98731 0.90026 1.68235 1.07881 1.00047 1.39335 1.23137 0.94603 0.96913 0.86832 1.20309 0.98528 0.89752 0.94933 1.22345 0.94464 0.83402 1.04128 1.22911 0.93257 0.97501 0.89255 1.88111 1.75090 1.23409 1.40985 0.92450 0.94928 0.92760 0.77440 0.93489 0.87955 0.89221 0.77238 0.80034 0.79693 0.79317 0.88345 0.90097 0.93284 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.35 37.16 0.35 -2.53 16 2 C 0.18 3.39 2.74 -67.92 -0.19 3.21 16 3 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 4 N -0.72 -16.69 4.28 -53.42 -0.23 -16.92 16 5 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 6 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 7 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 8 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 9 Si 0.90 21.70 29.55 -169.99 -5.02 16.68 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.08 1.24 2.53 -26.58 -0.07 1.17 16 14 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 15 C 0.07 1.11 4.72 -3.54 -0.02 1.10 16 16 N -0.60 -8.61 3.02 -173.77 -0.52 -9.14 16 17 C 0.60 8.89 7.59 -12.79 -0.10 8.80 16 18 O -0.55 -9.14 16.54 5.20 0.09 -9.05 16 19 C -0.27 -3.66 5.31 -104.75 -0.56 -4.22 16 20 C 0.12 1.60 9.56 -17.10 -0.16 1.43 16 21 N -0.30 -4.00 12.60 30.76 0.39 -3.62 16 22 N -0.25 -2.98 3.91 -10.50 -0.04 -3.02 16 23 C 0.07 0.56 11.25 -16.59 -0.19 0.38 16 24 C 0.02 0.16 11.07 -17.99 -0.20 -0.04 16 25 N -0.44 -4.43 10.44 -13.26 -0.14 -4.57 16 26 C 0.16 1.81 11.31 -17.01 -0.19 1.61 16 27 C 0.09 1.10 6.78 -84.06 -0.57 0.53 16 28 C 0.08 1.04 6.65 -3.53 -0.02 1.02 16 29 C 0.05 0.62 6.98 37.31 0.26 0.88 16 30 O -0.36 -5.90 9.22 -35.23 -0.32 -6.23 16 31 H 0.06 1.08 7.68 -51.93 -0.40 0.68 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.39 9.91 7.20 -40.82 -0.29 9.61 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 36 H 0.10 1.80 7.26 -51.93 -0.38 1.42 16 37 H 0.09 1.26 4.89 -51.93 -0.25 1.01 16 38 H 0.21 2.56 7.14 -52.48 -0.37 2.19 16 39 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.19 0.64 8.06 -52.48 -0.42 0.21 16 41 H 0.19 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.10 1.23 7.06 -51.93 -0.37 0.86 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 45 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -32.96 373.70 -7.18 -40.15 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.84 Total: 9.79 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.90 Total: 6.53 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: 0.18 Total: -63.50 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.24 Total: -15.28 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.96 -7.18 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675600852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.373 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds