Wall clock time and date at job start Wed Apr 1 2020 04:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47044 * 2 1 4 4 N 1.46503 * 109.46869 * 239.99692 * 2 1 3 5 5 C 1.36933 * 119.99903 * 85.00245 * 4 2 1 6 6 H 1.08002 * 120.00191 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00026 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99933 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00253 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47469 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.46998 * 299.99745 * 9 7 5 12 12 H 1.48497 * 109.47148 * 59.99478 * 9 7 5 13 13 C 1.53001 * 109.46961 * 119.99662 * 2 1 3 14 14 H 1.08994 * 109.51335 * 299.89864 * 13 2 1 15 15 C 1.53297 * 109.51229 * 179.74198 * 13 2 1 16 16 N 1.47145 * 108.38516 * 187.77709 * 15 13 2 17 17 C 1.34778 * 120.98066 * 230.51770 * 16 15 13 18 18 O 1.21688 * 119.99737 * 174.74908 * 17 16 15 19 19 C 1.46809 * 120.00098 * 354.74499 * 17 16 15 20 20 C 1.40413 * 126.54246 * 322.19459 * 19 17 16 21 21 N 1.30971 * 108.76880 * 179.81329 * 20 19 17 22 22 N 1.39711 * 109.48404 * 0.45443 * 21 20 19 23 23 C 1.36358 * 133.18681 * 179.68655 * 22 21 20 24 24 C 1.35302 * 119.80376 * 180.02562 * 23 22 21 25 25 N 1.33234 * 121.27341 * 0.02562 * 24 23 22 26 26 C 1.31417 * 121.08224 * 359.97438 * 25 24 23 27 27 C 1.36818 * 107.97367 * 359.71110 * 22 21 20 28 28 C 1.47153 * 118.04060 * 50.53512 * 16 15 13 29 29 C 1.53296 * 108.38459 * 309.47036 * 28 16 15 30 30 O 1.42961 * 109.22436 * 52.29606 * 29 28 16 31 31 H 1.08993 * 109.47044 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46961 * 300.00375 * 1 2 3 33 33 H 1.09002 * 109.46829 * 59.99875 * 1 2 3 34 34 H 0.96996 * 119.99928 * 265.00230 * 4 2 1 35 35 H 0.97005 * 120.00061 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.68012 * 307.50258 * 15 13 2 37 37 H 1.08999 * 109.67780 * 68.05575 * 15 13 2 38 38 H 1.08003 * 125.61544 * 359.97438 * 20 19 17 39 39 H 1.07994 * 120.09661 * 0.04495 * 23 22 21 40 40 H 1.08007 * 119.35735 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.18017 * 180.02562 * 26 25 24 42 42 H 1.08994 * 109.68289 * 189.74311 * 28 16 15 43 43 H 1.09001 * 109.67746 * 69.18610 * 28 16 15 44 44 H 1.09007 * 109.50857 * 292.37513 * 29 28 16 45 45 H 1.08996 * 109.55513 * 172.24843 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3757 6 1 1.8927 1.0404 -2.4242 7 6 2.6123 -0.6619 -3.5090 8 7 2.9262 -1.9387 -3.4496 9 14 2.7914 0.2700 -5.1179 10 1 3.3002 -0.6484 -6.1681 11 1 1.4692 0.8068 -5.5289 12 1 3.7465 1.3925 -4.9362 13 6 2.0400 -0.7212 1.2493 14 1 1.6786 -0.2068 2.1397 15 6 3.5730 -0.7274 1.2470 16 7 4.0353 -1.5829 2.3514 17 6 4.9544 -1.1417 3.2329 18 8 5.2537 -1.8261 4.1935 19 6 5.5945 0.1645 3.0340 20 6 5.9815 0.7278 1.8075 21 7 6.5137 1.9031 2.0328 22 7 6.5108 2.1604 3.4060 23 6 6.9430 3.2116 4.1593 24 6 6.8041 3.1769 5.5047 25 7 6.2506 2.1305 6.1161 26 6 5.8195 1.0948 5.4316 27 6 5.9422 1.0870 4.0355 28 6 3.4647 -2.9346 2.4647 29 6 1.9371 -2.8210 2.4076 30 8 1.5639 -2.0693 1.2502 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6318 -1.1526 35 1 3.2495 -2.3960 -4.2416 36 1 3.9371 -1.1231 0.2989 37 1 3.9444 0.2875 1.3887 38 1 5.8581 0.2686 0.8377 39 1 7.3946 4.0695 3.6834 40 1 7.1486 4.0136 6.0944 41 1 5.3727 0.2544 5.9422 42 1 3.7645 -3.3813 3.4127 43 1 3.8180 -3.5525 1.6392 44 1 1.5760 -2.3144 3.3027 45 1 1.4990 -3.8174 2.3514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675600852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:57 Heat of formation + Delta-G solvation = 49.212797 kcal Electronic energy + Delta-G solvation = -30920.850040 eV Core-core repulsion = 26747.908423 eV Total energy + Delta-G solvation = -4172.941618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.68673 -41.33269 -39.66409 -39.22772 -36.96551 -35.80864 -34.80262 -34.11992 -32.53463 -31.88967 -30.65347 -29.97137 -28.72573 -25.97827 -25.84583 -25.55806 -24.69118 -23.93359 -22.82807 -21.20809 -20.59609 -19.45514 -19.20052 -18.59538 -17.93776 -17.66079 -17.25727 -17.22402 -16.56371 -16.50369 -16.18090 -16.11447 -15.91723 -15.66174 -15.17419 -15.03433 -14.68699 -14.58161 -14.15930 -14.05750 -14.04583 -13.91279 -13.45096 -13.09994 -12.97289 -12.70886 -12.52541 -12.46925 -12.44719 -12.19785 -12.01523 -11.80028 -11.63436 -11.46398 -11.15114 -11.09602 -11.02100 -10.92317 -10.88472 -9.62359 -9.02486 -8.89822 -7.84717 -5.11642 -0.74207 -0.33520 0.78993 0.88763 1.51939 1.53230 1.58957 1.72008 1.95123 2.32708 2.61824 2.82726 2.84698 3.07365 3.19206 3.49226 3.54147 3.66597 3.71654 3.91069 3.94889 3.98460 4.10635 4.15253 4.24166 4.28672 4.32070 4.43187 4.44251 4.53254 4.64631 4.78762 4.82709 4.88713 4.95485 5.00805 5.04432 5.12755 5.23472 5.32107 5.38039 5.59388 5.64029 6.05849 6.24540 6.29061 6.37272 6.45629 7.01779 7.44477 8.20489 8.45895 9.37989 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.003500 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.760989 B = 7998.459257 C = 9344.734715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.176 3.824 3 H 0.065 0.935 4 N -0.725 5.725 5 C -0.232 4.232 6 H 0.076 0.924 7 C -0.070 4.070 8 N -0.965 5.965 9 Si 0.962 3.038 10 H -0.301 1.301 11 H -0.283 1.283 12 H -0.278 1.278 13 C 0.086 3.914 14 H 0.076 0.924 15 C 0.088 3.912 16 N -0.603 5.603 17 C 0.603 3.397 18 O -0.572 6.572 19 C -0.296 4.296 20 C 0.119 3.881 21 N -0.319 5.319 22 N -0.250 5.250 23 C 0.068 3.932 24 C 0.035 3.965 25 N -0.445 5.445 26 C 0.148 3.852 27 C 0.084 3.916 28 C 0.078 3.922 29 C 0.050 3.950 30 O -0.382 6.382 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.378 0.622 35 H 0.247 0.753 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.210 0.790 39 H 0.219 0.781 40 H 0.232 0.768 41 H 0.192 0.808 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 9.045 20.128 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.067 3.933 3 H 0.083 0.917 4 N -0.366 5.366 5 C -0.364 4.364 6 H 0.094 0.906 7 C -0.263 4.263 8 N -0.616 5.616 9 Si 0.792 3.208 10 H -0.228 1.228 11 H -0.209 1.209 12 H -0.204 1.204 13 C 0.027 3.973 14 H 0.094 0.906 15 C -0.035 4.035 16 N -0.335 5.335 17 C 0.393 3.607 18 O -0.453 6.453 19 C -0.314 4.314 20 C -0.059 4.059 21 N -0.143 5.143 22 N -0.017 5.017 23 C -0.061 4.061 24 C -0.108 4.108 25 N -0.156 5.156 26 C -0.029 4.029 27 C -0.039 4.039 28 C -0.044 4.044 29 C -0.027 4.027 30 O -0.301 6.301 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.211 0.789 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.226 0.774 39 H 0.236 0.764 40 H 0.248 0.752 41 H 0.208 0.792 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.809 9.955 20.584 23.591 hybrid contribution 0.051 -0.907 -1.912 2.117 sum 5.861 9.048 18.672 21.560 Atomic orbital electron populations 1.22203 0.97503 1.00995 1.00438 1.20480 0.93378 0.94745 0.84734 0.91729 1.42496 1.77888 1.10533 1.05646 1.19550 1.34459 0.94069 0.88346 0.90634 1.25384 1.03385 0.96652 1.00847 1.69815 1.52670 1.10063 1.29087 0.85382 0.77736 0.77409 0.80242 1.22799 1.20932 1.20430 1.22721 0.91947 0.83953 0.98685 0.90638 1.22544 0.95711 0.95872 0.89404 1.47994 1.40741 1.15970 1.28806 1.17056 0.78055 0.84240 0.81331 1.90739 1.64828 1.58544 1.31178 1.19592 1.20077 0.99609 0.92089 1.24475 0.91677 0.90405 0.99361 1.77733 1.29606 1.19228 0.87689 1.46540 1.35522 1.12965 1.06665 1.23544 0.98813 0.91590 0.92168 1.23240 0.98685 0.98724 0.90104 1.68280 1.07345 1.00316 1.39702 1.23160 0.95859 0.97758 0.86164 1.20454 0.98283 0.89761 0.95408 1.22404 0.94952 0.82919 1.04145 1.23088 0.92787 0.98266 0.88540 1.88073 1.75410 1.23731 1.42894 0.93833 0.91605 0.94312 0.78913 0.94371 0.90949 0.88277 0.77375 0.76406 0.75157 0.79161 0.87563 0.90979 0.91881 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.35 71.98 0.67 -4.55 16 2 C 0.18 6.42 2.74 44.99 0.12 6.55 16 3 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 4 N -0.72 -34.18 4.28 -322.93 -1.38 -35.57 16 5 C -0.23 -12.19 9.93 84.03 0.83 -11.36 16 6 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 7 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 8 N -0.97 -57.65 13.06 21.65 0.28 -57.37 16 9 Si 0.96 45.16 29.55 68.60 2.03 47.19 16 10 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 C 0.09 2.67 2.53 30.69 0.08 2.74 16 14 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 15 C 0.09 2.67 4.72 86.36 0.41 3.08 16 16 N -0.60 -17.36 3.02 -821.91 -2.48 -19.84 16 17 C 0.60 18.09 7.59 86.48 0.66 18.75 16 18 O -0.57 -19.23 16.54 -4.31 -0.07 -19.30 16 19 C -0.30 -8.15 5.31 -19.95 -0.11 -8.26 16 20 C 0.12 3.20 9.56 85.35 0.82 4.02 16 21 N -0.32 -8.45 12.60 -56.59 -0.71 -9.16 16 22 N -0.25 -5.54 3.91 -187.14 -0.73 -6.27 16 23 C 0.07 0.87 11.25 83.31 0.94 1.80 16 24 C 0.03 0.37 11.07 83.80 0.93 1.30 16 25 N -0.45 -7.71 10.44 -195.85 -2.05 -9.75 16 26 C 0.15 3.08 11.31 85.22 0.96 4.04 16 27 C 0.08 2.06 6.78 39.39 0.27 2.33 16 28 C 0.08 2.05 6.65 86.35 0.57 2.62 16 29 C 0.05 1.23 6.98 72.08 0.50 1.74 16 30 O -0.38 -12.42 9.22 -148.98 -1.37 -13.79 16 31 H 0.04 1.61 7.68 -2.39 -0.02 1.59 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.38 19.74 7.20 -92.71 -0.67 19.07 16 35 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 36 H 0.07 2.67 7.26 -2.39 -0.02 2.65 16 37 H 0.10 2.81 4.89 -2.39 -0.01 2.80 16 38 H 0.21 5.39 7.14 -2.91 -0.02 5.37 16 39 H 0.22 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.23 0.26 8.06 -2.91 -0.02 0.24 16 41 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 42 H 0.11 2.63 7.06 -2.39 -0.02 2.62 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -72.34 373.70 2.00 -70.34 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.37 Total: 32.16 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 8.12 Total: 21.37 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -7.07 Total: -137.97 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.45 Total: -33.09 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -72.34 2.00 -70.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675600852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.555 kcal (2) G-P(sol) polarization free energy of solvation -72.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds