Wall clock time and date at job start Wed Apr 1 2020 03:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47390 * 2 1 4 4 C 1.53002 * 109.47163 * 239.99647 * 2 1 3 5 5 C 1.53004 * 109.46979 * 175.00176 * 4 2 1 6 6 C 1.53005 * 109.46833 * 180.02562 * 5 4 2 7 7 N 1.46490 * 109.46915 * 179.97438 * 6 5 4 8 8 C 1.36940 * 120.00287 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99286 * 0.02562 * 8 7 6 10 10 C 1.38804 * 120.00682 * 179.97438 * 8 7 6 11 11 N 1.31617 * 119.99746 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00368 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47022 * 59.99885 * 12 10 8 14 14 H 1.48500 * 109.47273 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46797 * 300.00303 * 12 10 8 16 16 N 1.46502 * 109.47348 * 119.99766 * 2 1 3 17 17 C 1.34778 * 119.99880 * 275.00463 * 16 2 1 18 18 O 1.21597 * 120.00397 * 359.97438 * 17 16 2 19 19 C 1.47452 * 119.99906 * 179.97438 * 17 16 2 20 20 C 1.38714 * 120.31260 * 359.97438 * 19 17 16 21 21 C 1.39105 * 120.69586 * 179.97438 * 20 19 17 22 22 F 1.35103 * 119.49781 * 179.97438 * 21 20 19 23 23 C 1.36529 * 120.99804 * 0.02562 * 21 20 19 24 24 C 1.40406 * 120.07591 * 359.97438 * 23 21 20 25 25 C 1.40813 * 121.23497 * 180.02562 * 24 23 21 26 26 C 1.36620 * 118.16129 * 179.97438 * 25 24 23 27 27 C 1.39237 * 119.90484 * 0.04584 * 26 25 24 28 28 N 1.31224 * 121.69795 * 359.97432 * 27 26 25 29 29 C 1.33357 * 121.36080 * 0.02562 * 28 27 26 30 30 H 1.09006 * 109.47212 * 299.99884 * 1 2 3 31 31 H 1.08994 * 109.47330 * 60.00254 * 1 2 3 32 32 H 1.09001 * 109.47141 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47099 * 295.00037 * 4 2 1 34 34 H 1.08993 * 109.47083 * 55.00112 * 4 2 1 35 35 H 1.08994 * 109.47092 * 299.99866 * 5 4 2 36 36 H 1.08993 * 109.47265 * 60.00048 * 5 4 2 37 37 H 1.08998 * 109.46582 * 300.00002 * 6 5 4 38 38 H 1.08994 * 109.47204 * 59.99311 * 6 5 4 39 39 H 0.97000 * 120.00807 * 359.97438 * 7 6 5 40 40 H 0.97004 * 120.00097 * 179.97438 * 11 10 8 41 41 H 0.97002 * 120.00183 * 94.99284 * 16 2 1 42 42 H 1.07994 * 119.65422 * 0.25814 * 20 19 17 43 43 H 1.08002 * 119.96466 * 179.97438 * 23 21 20 44 44 H 1.07998 * 120.92262 * 359.95123 * 25 24 23 45 45 H 1.08001 * 120.05241 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.15373 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0748 -1.3342 -2.5632 7 7 5.5347 -1.2303 -2.6252 8 6 6.2185 -1.8045 -3.6634 9 1 5.6814 -2.3336 -4.4367 10 6 7.6018 -1.7057 -3.7225 11 7 8.2563 -1.0605 -2.7803 12 14 8.5345 -2.4884 -5.1392 13 1 8.0773 -1.8943 -6.4211 14 1 9.9892 -2.2425 -4.9700 15 1 8.2784 -3.9510 -5.1523 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0181 2.3572 18 8 1.8581 1.1618 2.4117 19 6 2.6380 -0.7133 3.5613 20 6 2.9689 -2.0593 3.5066 21 6 3.4334 -2.7229 4.6375 22 9 3.7481 -4.0343 4.5570 23 6 3.5750 -2.0692 5.8277 24 6 3.2509 -0.7065 5.9251 25 6 3.3882 -0.0083 7.1402 26 6 3.0552 1.3165 7.1638 27 6 2.5942 1.9371 6.0057 28 7 2.4677 1.2818 4.8759 29 6 2.7756 -0.0126 4.7860 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7516 -1.7715 -1.2055 34 1 1.6054 -0.2619 -2.1369 35 1 3.8532 0.4368 -1.3573 36 1 3.9994 -1.0728 -0.4259 37 1 3.7863 -2.3844 -2.5198 38 1 3.6401 -0.8744 -3.4507 39 1 6.0171 -0.7548 -1.9309 40 1 9.2230 -0.9917 -2.8214 41 1 2.2490 -1.6318 1.1527 42 1 2.8692 -2.5966 2.5751 43 1 3.9367 -2.6009 6.6955 44 1 3.7464 -0.5063 8.0290 45 1 3.1483 1.8813 8.0795 46 1 2.3340 2.9848 6.0382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675985508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:46 Heat of formation + Delta-G solvation = -17.223222 kcal Electronic energy + Delta-G solvation = -29055.705863 eV Core-core repulsion = 24859.963402 eV Total energy + Delta-G solvation = -4195.742461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.92 seconds Orbital eigenvalues (eV) -49.31011 -41.33452 -39.64780 -37.15135 -36.64493 -34.80743 -33.88603 -32.64236 -31.50848 -30.58631 -30.09561 -29.27151 -25.70987 -25.21844 -24.03556 -23.79648 -22.87681 -21.14058 -20.75675 -20.59498 -19.07712 -18.24009 -17.76382 -16.99650 -16.68714 -16.22476 -16.08722 -15.80837 -15.35045 -15.07613 -14.84535 -14.66485 -14.40881 -14.30794 -13.82880 -13.72745 -13.50588 -13.45832 -13.35361 -12.96792 -12.73716 -12.65735 -12.14463 -12.06963 -12.02211 -11.74064 -11.28615 -11.13285 -10.92896 -10.82410 -10.77285 -10.45668 -10.38151 -10.17170 -10.00407 -9.65734 -9.45079 -9.21218 -9.06952 -8.83534 -8.65834 -6.88638 -5.73061 -3.01851 -0.35956 0.28947 1.32581 2.17231 2.97400 3.04562 3.45915 3.49801 3.51319 3.66456 3.74913 3.84904 4.05715 4.20695 4.39807 4.46975 4.55980 4.59626 4.76485 4.79560 4.96765 5.08562 5.12101 5.18590 5.24602 5.38614 5.43881 5.45732 5.57568 5.60139 5.60754 5.66770 5.74057 5.82467 5.97760 6.03528 6.10616 6.14946 6.24047 6.30459 6.39012 6.44055 6.51311 6.89801 6.93053 7.43127 7.64965 7.71895 8.20967 8.46025 9.56564 10.15988 10.50184 11.49868 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.002436 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.331750 B =11490.418012 C =12549.005936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.720 5.720 17 C 0.555 3.445 18 O -0.493 6.493 19 C -0.072 4.072 20 C -0.097 4.097 21 C 0.101 3.899 22 F -0.130 7.130 23 C -0.112 4.112 24 C -0.088 4.088 25 C -0.059 4.059 26 C -0.166 4.166 27 C 0.132 3.868 28 N -0.432 5.432 29 C 0.152 3.848 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.397 0.603 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.411 0.532 23.096 28.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.374 5.374 17 C 0.340 3.660 18 O -0.367 6.367 19 C -0.076 4.076 20 C -0.118 4.118 21 C 0.082 3.918 22 F -0.109 7.109 23 C -0.132 4.132 24 C -0.090 4.090 25 C -0.086 4.086 26 C -0.186 4.186 27 C -0.041 4.041 28 N -0.138 5.138 29 C 0.028 3.972 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.232 0.768 42 H 0.167 0.833 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.159 0.841 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.880 1.626 22.114 27.867 hybrid contribution 1.371 -1.535 0.228 2.071 sum -15.508 0.090 22.342 27.197 Atomic orbital electron populations 1.22172 0.95389 1.01981 1.02485 1.21053 0.93604 0.97870 0.83511 0.89101 1.21857 0.96887 1.00763 0.96629 1.21738 0.93644 1.01540 0.99481 1.20645 0.86181 0.96414 0.94219 1.42379 1.00222 1.66217 1.29048 1.19197 0.89449 1.27152 1.01305 0.91277 1.24753 0.96463 1.01246 0.98657 1.69657 1.07247 1.46951 1.34438 0.86259 0.78979 0.78955 0.81951 1.21264 1.21680 1.21287 1.46059 1.67681 1.14014 1.09599 1.17733 0.78928 0.86837 0.82489 1.90860 1.47452 1.14305 1.84080 1.19819 1.01574 0.92483 0.93712 1.21475 0.97661 0.93972 0.98697 1.17113 1.01281 0.78964 0.94440 1.91571 1.90441 1.31947 1.96919 1.21073 1.00756 0.93779 0.97605 1.18514 1.01520 0.93993 0.94963 1.21430 0.96177 0.94487 0.96457 1.22020 1.00387 0.95657 1.00546 1.23242 0.92797 1.00586 0.87453 1.68327 1.12933 1.06405 1.26136 1.18604 0.96521 0.90501 0.91569 0.92245 0.91484 0.92574 0.91433 0.90153 0.91880 0.92124 0.96597 0.96497 0.78332 0.93483 0.76754 0.83270 0.83472 0.83895 0.84088 0.81979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.48 37.15 0.35 -1.30 16 2 C 0.14 1.69 2.57 -67.93 -0.17 1.52 16 3 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 4 C -0.12 -1.47 4.75 -26.73 -0.13 -1.60 16 5 C -0.13 -2.03 5.22 -26.73 -0.14 -2.17 16 6 C 0.15 3.11 6.26 -4.04 -0.03 3.08 16 7 N -0.73 -19.26 5.60 -59.92 -0.34 -19.60 16 8 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 9 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 12 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 N -0.72 -8.37 4.48 -54.88 -0.25 -8.62 16 17 C 0.56 7.73 7.73 -12.51 -0.10 7.63 16 18 O -0.49 -8.47 14.85 5.28 0.08 -8.40 16 19 C -0.07 -0.89 5.90 -104.62 -0.62 -1.50 16 20 C -0.10 -0.97 9.49 -39.08 -0.37 -1.34 16 21 C 0.10 0.98 7.22 -39.88 -0.29 0.69 16 22 F -0.13 -1.32 17.24 2.25 0.04 -1.28 16 23 C -0.11 -0.94 9.71 -39.38 -0.38 -1.32 16 24 C -0.09 -0.84 5.74 -106.83 -0.61 -1.45 16 25 C -0.06 -0.41 9.89 -39.19 -0.39 -0.80 16 26 C -0.17 -1.09 10.03 -39.79 -0.40 -1.49 16 27 C 0.13 1.21 11.15 -17.44 -0.19 1.01 16 28 N -0.43 -5.71 8.43 -10.76 -0.09 -5.80 16 29 C 0.15 1.89 6.61 -84.57 -0.56 1.33 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.99 7.75 -51.93 -0.40 0.59 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.40 3.79 6.62 -40.82 -0.27 3.52 16 42 H 0.15 1.19 6.36 -52.49 -0.33 0.85 16 43 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 46 H 0.16 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -36.34 391.27 -9.56 -45.90 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.33 Total: 7.68 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -4.27 Total: -5.30 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.05 Total: -62.27 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.08 Total: -8.40 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.34 -9.56 -45.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675985508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.677 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.92 seconds