Wall clock time and date at job start Wed Apr 1 2020 05:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47021 * 2 1 4 4 C 1.52996 * 109.47234 * 120.00820 * 2 1 3 5 5 N 1.46497 * 109.46999 * 175.00048 * 4 2 1 6 6 C 1.34778 * 119.99818 * 179.97438 * 5 4 2 7 7 O 1.21589 * 120.00404 * 359.97438 * 6 5 4 8 8 C 1.47532 * 119.99867 * 179.97438 * 6 5 4 9 9 C 1.39437 * 120.24933 * 359.72567 * 8 6 5 10 10 C 1.38281 * 120.28135 * 180.23183 * 9 8 6 11 11 C 1.37877 * 120.72856 * 0.05979 * 10 9 8 12 12 C 1.39676 * 120.10793 * 359.96209 * 11 10 9 13 13 N 1.35856 * 133.51071 * 180.02562 * 12 11 10 14 14 C 1.30095 * 109.53559 * 179.97438 * 13 12 11 15 15 N 1.36119 * 110.04564 * 359.97438 * 14 13 12 16 16 H 0.97006 * 126.30554 * 179.97438 * 15 14 13 17 17 C 1.37512 * 107.38644 * 0.02562 * 15 14 13 18 18 N 1.46903 * 109.46450 * 240.00351 * 2 1 3 19 19 C 1.46904 * 111.00110 * 85.00390 * 18 2 1 20 20 C 1.50696 * 109.47387 * 179.97438 * 19 18 2 21 21 O 1.21289 * 119.99815 * 359.97438 * 20 19 18 22 22 N 1.34777 * 120.00113 * 179.97438 * 20 19 18 23 23 C 1.37093 * 119.99810 * 179.97438 * 22 20 19 24 24 H 1.07997 * 120.00079 * 0.02562 * 23 22 20 25 25 C 1.38951 * 119.99912 * 179.97438 * 23 22 20 26 26 N 1.31415 * 119.99912 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00227 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47080 * 60.00336 * 27 25 23 29 29 H 1.48496 * 109.47392 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47070 * 300.00286 * 27 25 23 31 31 H 1.08996 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46631 * 299.99360 * 1 2 3 33 33 H 1.08998 * 109.47173 * 59.99112 * 1 2 3 34 34 H 1.09003 * 109.47626 * 54.99318 * 4 2 1 35 35 H 1.09000 * 109.46761 * 294.99674 * 4 2 1 36 36 H 0.96996 * 120.00185 * 359.97438 * 5 4 2 37 37 H 1.08004 * 119.85439 * 0.24847 * 9 8 6 38 38 H 1.07999 * 119.63270 * 180.02562 * 10 9 8 39 39 H 1.08005 * 119.94583 * 179.97438 * 11 10 9 40 40 H 1.08000 * 124.97680 * 179.97438 * 14 13 12 41 41 H 1.00903 * 110.99366 * 208.94960 * 18 2 1 42 42 H 1.09008 * 109.46591 * 299.99984 * 19 18 2 43 43 H 1.09003 * 109.47048 * 59.99061 * 19 18 2 44 44 H 0.96999 * 119.99930 * 0.02562 * 22 20 19 45 45 H 0.97001 * 119.99836 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4285 2.1909 7 8 3.5687 -1.8840 3.1425 8 6 5.6434 -1.5348 2.1315 9 6 6.3414 -1.0194 1.0400 10 6 7.7191 -1.1229 0.9814 11 6 8.4234 -1.7359 1.9959 12 6 7.7477 -2.2608 3.0999 13 7 8.1534 -2.9036 4.2260 14 6 7.1180 -3.1936 4.9584 15 7 5.9805 -2.7562 4.3521 16 1 5.0765 -2.8491 4.6917 17 6 6.3486 -2.1595 3.1692 18 7 2.0196 -0.6925 -1.1995 19 6 2.0824 0.2227 -2.3470 20 6 2.5882 -0.5213 -3.5559 21 8 2.8693 -1.6980 -3.4700 22 7 2.7284 0.1209 -4.7325 23 6 3.1891 -0.5559 -5.8321 24 1 3.4393 -1.6037 -5.7556 25 6 3.3331 0.1060 -7.0453 26 7 3.0281 1.3809 -7.1385 27 14 3.9601 -0.8162 -8.5439 28 1 3.0395 -1.9392 -8.8550 29 1 4.0230 0.1087 -9.7039 30 1 5.3168 -1.3513 -8.2639 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5140 -0.8899 34 1 1.6054 -1.7200 1.2950 35 1 1.7517 -0.1585 2.1369 36 1 3.9824 -0.4628 0.4315 37 1 5.8037 -0.5370 0.2371 38 1 8.2492 -0.7197 0.1312 39 1 9.4992 -1.8102 1.9369 40 1 7.1556 -3.7062 5.9082 41 1 2.9172 -1.1204 -1.0289 42 1 1.0869 0.6165 -2.5525 43 1 2.7588 1.0463 -2.1182 44 1 2.5040 1.0621 -4.8011 45 1 3.1289 1.8431 -7.9854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690634082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:14 Heat of formation + Delta-G solvation = 2.473222 kcal Electronic energy + Delta-G solvation = -29074.780171 eV Core-core repulsion = 24899.811773 eV Total energy + Delta-G solvation = -4174.968398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.45892 -40.03603 -38.49038 -37.39246 -37.01021 -34.25161 -33.82340 -33.37176 -31.43607 -31.07366 -30.32153 -29.67435 -26.89907 -26.21210 -24.24401 -23.88955 -22.61232 -22.24507 -20.81674 -20.62927 -19.39290 -18.55111 -17.95863 -17.75963 -16.96169 -16.47231 -16.19241 -15.83815 -15.56893 -15.49284 -15.22052 -14.71356 -14.51103 -14.44813 -14.24886 -13.94115 -13.89718 -13.48611 -12.89893 -12.73508 -12.59205 -12.36390 -12.28747 -12.04116 -11.95813 -11.81028 -11.71119 -11.46932 -11.10094 -11.00578 -10.93059 -10.61865 -10.47370 -10.25406 -10.11605 -9.54533 -9.39917 -8.75072 -8.54005 -8.50419 -8.20034 -8.01262 -6.46093 -3.87118 0.25901 1.18314 2.18438 2.68825 2.83481 2.87661 3.17215 3.23557 3.27752 3.60653 3.84027 3.92199 3.97858 4.21902 4.29530 4.48737 4.59822 4.63392 4.90685 4.96006 4.98217 5.04928 5.11437 5.19437 5.22045 5.39221 5.43719 5.60464 5.62897 5.66454 5.70936 5.89188 5.90795 5.91700 6.05460 6.07527 6.10641 6.18260 6.28622 6.45095 7.03105 7.07272 7.16737 7.48540 7.50775 7.51023 7.87347 8.01086 8.55935 9.13196 9.48806 9.99933 10.71368 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.002404 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.724822 B =11646.467419 C =13596.969036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.050 0.950 4 C 0.119 3.881 5 N -0.722 5.722 6 C 0.567 3.433 7 O -0.553 6.553 8 C -0.135 4.135 9 C -0.055 4.055 10 C -0.136 4.136 11 C -0.032 4.032 12 C 0.032 3.968 13 N -0.494 5.494 14 C 0.259 3.741 15 N -0.586 5.586 16 H 0.434 0.566 17 C 0.102 3.898 18 N -0.664 5.664 19 C 0.049 3.951 20 C 0.438 3.562 21 O -0.582 6.582 22 N -0.562 5.562 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.901 5.901 27 Si 0.931 3.069 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.273 1.273 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.400 0.600 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.219 0.781 41 H 0.347 0.653 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.162 -0.015 21.665 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 H 0.068 0.932 4 C -0.005 4.005 5 N -0.375 5.375 6 C 0.356 3.644 7 O -0.433 6.433 8 C -0.141 4.141 9 C -0.075 4.075 10 C -0.157 4.157 11 C -0.051 4.051 12 C -0.086 4.086 13 N -0.214 5.214 14 C -0.028 4.028 15 N -0.198 5.198 16 H 0.276 0.724 17 C -0.012 4.012 18 N -0.299 5.299 19 C -0.084 4.084 20 C 0.223 3.777 21 O -0.467 6.467 22 N -0.198 5.198 23 C -0.430 4.430 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.542 5.542 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.237 0.763 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.235 0.765 41 H 0.168 0.832 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.178 -1.421 22.216 22.650 hybrid contribution -0.187 1.046 -1.055 1.498 sum 3.991 -0.374 21.160 21.537 Atomic orbital electron populations 1.21735 0.93243 1.03016 1.01625 1.21826 0.97273 0.95944 0.88926 0.93222 1.21656 0.78715 1.02249 0.97862 1.45924 1.08365 1.59622 1.23552 1.18088 0.86743 0.77387 0.82199 1.90682 1.70087 1.48862 1.33629 1.18805 0.92235 1.07068 0.96004 1.21211 0.94814 0.96123 0.95374 1.20900 0.93635 1.01641 0.99492 1.20519 1.00295 0.94112 0.90217 1.19072 0.89775 1.03663 0.96097 1.70523 1.29113 1.17660 1.04083 1.25469 0.79968 0.98026 0.99353 1.43295 1.11517 1.47750 1.17198 0.72448 1.18565 0.94886 0.99148 0.88637 1.60125 1.34776 1.32305 1.02705 1.21770 1.01583 0.93758 0.91277 1.19773 0.85206 0.88226 0.84456 1.90537 1.55335 1.16070 1.84716 1.41855 1.57580 1.12435 1.07952 1.19650 1.40084 0.96459 0.86808 0.87953 1.25264 0.97572 0.95779 0.99242 1.69602 1.48443 1.08867 1.27326 0.85919 0.79453 0.78862 0.80009 1.19863 1.20962 1.19870 0.91481 0.92472 0.91872 0.90085 0.90612 0.76319 0.84748 0.84131 0.84617 0.76498 0.83232 0.89333 0.93812 0.77462 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.41 37.16 0.35 -1.06 16 2 C 0.07 0.77 2.81 -67.71 -0.19 0.58 16 3 H 0.05 0.50 7.80 -51.93 -0.40 0.09 16 4 C 0.12 1.27 5.31 -4.04 -0.02 1.25 16 5 N -0.72 -7.85 4.94 -61.35 -0.30 -8.15 16 6 C 0.57 7.09 7.76 -12.47 -0.10 6.99 16 7 O -0.55 -7.94 15.29 5.29 0.08 -7.86 16 8 C -0.13 -1.58 5.88 -104.94 -0.62 -2.20 16 9 C -0.06 -0.55 9.53 -39.12 -0.37 -0.92 16 10 C -0.14 -1.25 9.99 -39.70 -0.40 -1.65 16 11 C -0.03 -0.32 10.09 -39.18 -0.40 -0.72 16 12 C 0.03 0.38 7.22 -84.72 -0.61 -0.23 16 13 N -0.49 -5.74 11.28 -12.05 -0.14 -5.87 16 14 C 0.26 2.18 12.97 -89.72 -1.16 1.02 16 15 N -0.59 -5.73 6.00 -11.56 -0.07 -5.80 16 16 H 0.43 3.79 7.72 -40.82 -0.32 3.47 16 17 C 0.10 1.22 6.88 -83.77 -0.58 0.65 16 18 N -0.66 -9.77 5.93 -107.99 -0.64 -10.41 16 19 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 20 C 0.44 9.85 7.82 -10.99 -0.09 9.76 16 21 O -0.58 -15.26 15.78 5.55 0.09 -15.18 16 22 N -0.56 -13.70 5.29 -10.97 -0.06 -13.75 16 23 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 24 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -23.93 13.05 55.50 0.72 -23.20 16 27 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 30 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 3.89 5.40 -40.82 -0.22 3.67 16 37 H 0.13 1.09 6.39 -52.48 -0.34 0.76 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.22 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.35 5.25 6.41 -39.29 -0.25 5.00 16 42 H 0.09 1.34 7.44 -51.92 -0.39 0.95 16 43 H 0.04 0.61 8.06 -51.93 -0.42 0.20 16 44 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -34.83 382.02 -9.54 -44.37 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -5.51 Total: 18.03 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -4.45 Total: 6.45 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -0.48 Total: -67.20 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.17 Total: -23.04 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.83 -9.54 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690634082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.839 kcal (2) G-P(sol) polarization free energy of solvation -34.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds