Wall clock time and date at job start Wed Apr 1 2020 05:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47021 * 2 1 4 4 C 1.52996 * 109.47234 * 120.00820 * 2 1 3 5 5 N 1.46497 * 109.46999 * 175.00048 * 4 2 1 6 6 C 1.34778 * 119.99818 * 179.97438 * 5 4 2 7 7 O 1.21589 * 120.00404 * 359.97438 * 6 5 4 8 8 C 1.47532 * 119.99867 * 179.97438 * 6 5 4 9 9 C 1.39437 * 120.24933 * 359.72567 * 8 6 5 10 10 C 1.38281 * 120.28135 * 180.23183 * 9 8 6 11 11 C 1.37877 * 120.72856 * 0.05979 * 10 9 8 12 12 C 1.39676 * 120.10793 * 359.96209 * 11 10 9 13 13 N 1.35856 * 133.51071 * 180.02562 * 12 11 10 14 14 C 1.30095 * 109.53559 * 179.97438 * 13 12 11 15 15 N 1.36119 * 110.04564 * 359.97438 * 14 13 12 16 16 H 0.97006 * 126.30554 * 179.97438 * 15 14 13 17 17 C 1.37512 * 107.38644 * 0.02562 * 15 14 13 18 18 N 1.46903 * 109.46450 * 240.00351 * 2 1 3 19 19 C 1.46904 * 111.00110 * 85.00390 * 18 2 1 20 20 C 1.50696 * 109.47387 * 179.97438 * 19 18 2 21 21 O 1.21289 * 119.99815 * 359.97438 * 20 19 18 22 22 N 1.34777 * 120.00113 * 179.97438 * 20 19 18 23 23 C 1.37093 * 119.99810 * 179.97438 * 22 20 19 24 24 H 1.07997 * 120.00079 * 0.02562 * 23 22 20 25 25 C 1.38951 * 119.99912 * 179.97438 * 23 22 20 26 26 N 1.31415 * 119.99912 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00227 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47080 * 60.00336 * 27 25 23 29 29 H 1.48496 * 109.47392 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47070 * 300.00286 * 27 25 23 31 31 H 1.08996 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46631 * 299.99360 * 1 2 3 33 33 H 1.08998 * 109.47173 * 59.99112 * 1 2 3 34 34 H 1.09003 * 109.47626 * 54.99318 * 4 2 1 35 35 H 1.09000 * 109.46761 * 294.99674 * 4 2 1 36 36 H 0.96996 * 120.00185 * 359.97438 * 5 4 2 37 37 H 1.08004 * 119.85439 * 0.24847 * 9 8 6 38 38 H 1.07999 * 119.63270 * 180.02562 * 10 9 8 39 39 H 1.08005 * 119.94583 * 179.97438 * 11 10 9 40 40 H 1.08000 * 124.97680 * 179.97438 * 14 13 12 41 41 H 1.00903 * 110.99366 * 208.94960 * 18 2 1 42 42 H 1.09008 * 109.46591 * 299.99984 * 19 18 2 43 43 H 1.09003 * 109.47048 * 59.99061 * 19 18 2 44 44 H 0.96999 * 119.99930 * 0.02562 * 22 20 19 45 45 H 0.97001 * 119.99836 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4285 2.1909 7 8 3.5687 -1.8840 3.1425 8 6 5.6434 -1.5348 2.1315 9 6 6.3414 -1.0194 1.0400 10 6 7.7191 -1.1229 0.9814 11 6 8.4234 -1.7359 1.9959 12 6 7.7477 -2.2608 3.0999 13 7 8.1534 -2.9036 4.2260 14 6 7.1180 -3.1936 4.9584 15 7 5.9805 -2.7562 4.3521 16 1 5.0765 -2.8491 4.6917 17 6 6.3486 -2.1595 3.1692 18 7 2.0196 -0.6925 -1.1995 19 6 2.0824 0.2227 -2.3470 20 6 2.5882 -0.5213 -3.5559 21 8 2.8693 -1.6980 -3.4700 22 7 2.7284 0.1209 -4.7325 23 6 3.1891 -0.5559 -5.8321 24 1 3.4393 -1.6037 -5.7556 25 6 3.3331 0.1060 -7.0453 26 7 3.0281 1.3809 -7.1385 27 14 3.9601 -0.8162 -8.5439 28 1 3.0395 -1.9392 -8.8550 29 1 4.0230 0.1087 -9.7039 30 1 5.3168 -1.3513 -8.2639 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5140 -0.8899 34 1 1.6054 -1.7200 1.2950 35 1 1.7517 -0.1585 2.1369 36 1 3.9824 -0.4628 0.4315 37 1 5.8037 -0.5370 0.2371 38 1 8.2492 -0.7197 0.1312 39 1 9.4992 -1.8102 1.9369 40 1 7.1556 -3.7062 5.9082 41 1 2.9172 -1.1204 -1.0289 42 1 1.0869 0.6165 -2.5525 43 1 2.7588 1.0463 -2.1182 44 1 2.5040 1.0621 -4.8011 45 1 3.1289 1.8431 -7.9854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690634082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:13 Heat of formation + Delta-G solvation = -23.676413 kcal Electronic energy + Delta-G solvation = -29075.914104 eV Core-core repulsion = 24899.811773 eV Total energy + Delta-G solvation = -4176.102331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.21114 -40.97358 -40.14050 -38.31736 -38.03475 -35.96909 -35.06950 -34.15428 -33.26287 -32.25033 -31.15489 -30.43011 -28.15557 -27.41126 -25.73895 -24.85231 -23.38551 -23.00328 -21.74348 -21.50909 -21.09829 -19.91896 -19.37025 -18.59112 -17.89083 -17.63582 -17.15333 -16.95931 -16.78682 -16.44778 -16.30430 -16.18213 -15.83287 -15.46041 -15.31710 -15.23416 -14.95828 -14.56731 -14.28125 -13.75415 -13.66010 -13.46825 -13.28531 -13.12323 -13.00956 -12.92711 -12.82040 -12.78500 -12.57440 -12.40797 -12.11652 -11.89506 -11.80240 -11.48313 -11.47653 -10.99361 -10.33301 -10.30518 -9.99465 -9.51984 -9.37473 -9.29074 -8.44956 -5.93141 -0.52659 0.39912 1.40036 1.40887 1.43534 1.53616 1.94060 2.01525 2.03849 2.07633 2.30167 2.79497 2.87202 3.22835 3.25353 3.47250 3.51849 3.66604 3.83895 3.88792 4.15366 4.22652 4.26136 4.29478 4.36556 4.39151 4.46989 4.60073 4.62120 4.68157 4.78133 4.91155 4.93225 5.04731 5.14899 5.20093 5.32654 5.35183 5.42706 5.44397 5.72402 5.88665 6.09795 6.25021 6.34172 6.39175 6.62203 6.77352 6.96236 7.14902 7.58818 8.14169 8.71952 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.002404 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.724822 B =11646.467419 C =13596.969036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.077 3.923 3 H 0.071 0.929 4 C 0.124 3.876 5 N -0.715 5.715 6 C 0.564 3.436 7 O -0.578 6.578 8 C -0.153 4.153 9 C -0.057 4.057 10 C -0.134 4.134 11 C -0.039 4.039 12 C 0.009 3.991 13 N -0.529 5.529 14 C 0.273 3.727 15 N -0.587 5.587 16 H 0.437 0.563 17 C 0.078 3.922 18 N -0.681 5.681 19 C 0.063 3.937 20 C 0.437 3.563 21 O -0.623 6.623 22 N -0.572 5.572 23 C -0.332 4.332 24 H 0.078 0.922 25 C -0.011 4.011 26 N -0.919 5.919 27 Si 0.989 3.011 28 H -0.274 1.274 29 H -0.271 1.271 30 H -0.271 1.271 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.406 0.594 37 H 0.151 0.849 38 H 0.166 0.834 39 H 0.151 0.849 40 H 0.265 0.735 41 H 0.342 0.658 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.397 0.603 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.289 0.976 22.074 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.032 4.032 3 H 0.089 0.911 4 C 0.000 4.000 5 N -0.367 5.367 6 C 0.353 3.647 7 O -0.460 6.460 8 C -0.159 4.159 9 C -0.076 4.076 10 C -0.154 4.154 11 C -0.059 4.059 12 C -0.108 4.108 13 N -0.249 5.249 14 C -0.014 4.014 15 N -0.199 5.199 16 H 0.279 0.721 17 C -0.037 4.037 18 N -0.316 5.316 19 C -0.069 4.069 20 C 0.225 3.775 21 O -0.510 6.510 22 N -0.209 5.209 23 C -0.462 4.462 24 H 0.096 0.904 25 C -0.211 4.211 26 N -0.560 5.560 27 Si 0.813 3.187 28 H -0.200 1.200 29 H -0.196 1.196 30 H -0.196 1.196 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.244 0.756 37 H 0.168 0.832 38 H 0.183 0.817 39 H 0.169 0.831 40 H 0.281 0.719 41 H 0.163 0.837 42 H 0.123 0.877 43 H 0.093 0.907 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.286 -0.392 22.624 23.030 hybrid contribution -0.236 0.704 -1.096 1.324 sum 4.050 0.312 21.528 21.908 Atomic orbital electron populations 1.21748 0.92536 1.02535 1.02714 1.21877 0.97654 0.96524 0.87144 0.91085 1.21621 0.78476 1.01566 0.98321 1.45871 1.08464 1.59082 1.23318 1.18274 0.87165 0.77128 0.82101 1.90655 1.70618 1.50060 1.34630 1.18893 0.91890 1.08251 0.96885 1.21475 0.95360 0.95631 0.95183 1.21207 0.93428 1.00926 0.99875 1.20835 1.01247 0.93822 0.89972 1.19456 0.90132 1.04305 0.96918 1.70522 1.30475 1.19167 1.04711 1.26420 0.78789 0.96221 0.99940 1.43389 1.12076 1.47619 1.16803 0.72071 1.18837 0.95241 1.00001 0.89572 1.60118 1.34767 1.32983 1.03756 1.21632 1.02697 0.93685 0.88856 1.20882 0.83239 0.87970 0.85452 1.90509 1.56639 1.18238 1.85601 1.41915 1.58206 1.12606 1.08177 1.19594 1.42053 0.95930 0.88604 0.90405 1.25980 0.97293 0.96589 1.01249 1.69657 1.48558 1.09614 1.28153 0.85043 0.78774 0.77827 0.77053 1.19986 1.19597 1.19593 0.92794 0.89969 0.92183 0.91733 0.89268 0.75606 0.83181 0.81654 0.83088 0.71938 0.83734 0.87705 0.90707 0.76914 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.41 71.98 0.68 -1.82 16 2 C 0.08 1.52 2.81 44.92 0.13 1.64 16 3 H 0.07 1.15 7.80 -2.39 -0.02 1.14 16 4 C 0.12 2.47 5.31 86.38 0.46 2.93 16 5 N -0.72 -14.85 4.94 -466.28 -2.30 -17.15 16 6 C 0.56 13.99 7.76 86.69 0.67 14.66 16 7 O -0.58 -16.66 15.29 -4.00 -0.06 -16.72 16 8 C -0.15 -3.58 5.88 -20.07 -0.12 -3.70 16 9 C -0.06 -1.08 9.53 22.57 0.22 -0.87 16 10 C -0.13 -2.32 9.99 22.19 0.22 -2.10 16 11 C -0.04 -0.78 10.09 22.53 0.23 -0.55 16 12 C 0.01 0.23 7.22 39.41 0.28 0.51 16 13 N -0.53 -12.06 11.28 -192.03 -2.17 -14.22 16 14 C 0.27 4.31 12.97 180.03 2.34 6.65 16 15 N -0.59 -11.34 6.00 -190.50 -1.14 -12.49 16 16 H 0.44 7.60 7.72 -92.70 -0.72 6.89 16 17 C 0.08 1.88 6.88 39.26 0.27 2.15 16 18 N -0.68 -19.03 5.93 -495.56 -2.94 -21.96 16 19 C 0.06 1.93 5.97 85.55 0.51 2.44 16 20 C 0.44 19.54 7.82 87.66 0.69 20.23 16 21 O -0.62 -33.14 15.78 -3.06 -0.05 -33.18 16 22 N -0.57 -27.94 5.29 -307.00 -1.62 -29.57 16 23 C -0.33 -18.29 9.68 84.04 0.81 -17.48 16 24 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 25 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 26 N -0.92 -48.20 13.05 21.66 0.28 -47.91 16 27 Si 0.99 42.01 29.55 68.60 2.03 44.03 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 29 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 30 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.41 7.36 5.40 -92.71 -0.50 6.86 16 37 H 0.15 2.26 6.39 -2.91 -0.02 2.24 16 38 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.27 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.34 10.04 6.41 -89.69 -0.58 9.47 16 42 H 0.10 2.90 7.44 -2.38 -0.02 2.88 16 43 H 0.08 1.85 8.06 -2.39 -0.02 1.83 16 44 H 0.40 18.31 7.90 -92.71 -0.73 17.58 16 45 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -76.70 382.02 -1.56 -78.26 By element: Atomic # 1 Polarization: 47.77 SS G_CDS: -1.43 Total: 46.34 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 7.85 Total: 24.59 kcal Atomic # 7 Polarization: -133.42 SS G_CDS: -9.89 Total: -143.31 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.11 Total: -49.91 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -76.70 -1.56 -78.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690634082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.580 kcal (2) G-P(sol) polarization free energy of solvation -76.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds