Wall clock time and date at job start Wed Apr 1 2020 04:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 N 1.46905 * 109.47019 * 184.99887 * 4 2 1 6 6 C 1.46901 * 111.00168 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.46911 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00122 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99752 * 180.02562 * 7 6 5 10 10 C 1.37100 * 119.99761 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00039 * 0.02562 * 10 9 7 12 12 C 1.38947 * 119.99520 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00358 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99809 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47177 * 89.99939 * 14 12 10 16 16 H 1.48501 * 109.47034 * 210.00179 * 14 12 10 17 17 H 1.48496 * 109.46939 * 330.00091 * 14 12 10 18 18 N 1.46504 * 109.46883 * 120.00066 * 2 1 3 19 19 C 1.34779 * 119.99783 * 274.99286 * 18 2 1 20 20 O 1.21613 * 119.99652 * 0.02562 * 19 18 2 21 21 C 1.47373 * 119.99951 * 180.02562 * 19 18 2 22 22 C 1.39261 * 120.83483 * 359.97438 * 21 19 18 23 23 N 1.31909 * 120.96670 * 179.97438 * 22 21 19 24 24 C 1.31924 * 122.72142 * 0.02562 * 23 22 21 25 25 C 1.38689 * 120.79204 * 359.97438 * 24 23 22 26 26 N 1.37750 * 134.30141 * 180.02562 * 25 24 23 27 27 H 0.97003 * 125.56377 * 0.02562 * 26 25 24 28 28 C 1.36560 * 108.88083 * 180.02562 * 26 25 24 29 29 C 1.34642 * 109.66097 * 359.97438 * 28 26 25 30 30 C 1.40978 * 118.84369 * 359.74964 * 25 24 23 31 31 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 33 33 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 35 35 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 36 36 H 1.00900 * 110.99539 * 56.04548 * 5 4 2 37 37 H 1.08996 * 109.47029 * 299.99968 * 6 5 4 38 38 H 1.09002 * 109.46992 * 60.00059 * 6 5 4 39 39 H 0.97003 * 119.99807 * 0.02562 * 9 7 6 40 40 H 0.97003 * 120.00338 * 179.97438 * 13 12 10 41 41 H 0.97003 * 120.00173 * 95.00359 * 18 2 1 42 42 H 1.07991 * 119.51311 * 359.96477 * 22 21 19 43 43 H 1.08003 * 119.60107 * 180.02562 * 24 23 22 44 44 H 1.08002 * 125.16651 * 179.97438 * 28 26 25 45 45 H 1.07997 * 126.09274 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.5040 -0.8268 -1.1905 6 6 4.0303 -1.5151 -2.3768 7 6 5.5316 -1.6047 -2.2807 8 8 6.1066 -1.1404 -1.3189 9 7 6.2354 -2.1998 -3.2641 10 6 7.6012 -2.2808 -3.1770 11 1 8.1131 -1.8681 -2.3202 12 6 8.3267 -2.8948 -4.1905 13 7 7.7038 -3.3974 -5.2328 14 14 10.1876 -3.0059 -4.0716 15 1 10.5652 -4.2638 -3.3786 16 1 10.7722 -2.9981 -5.4367 17 1 10.7048 -1.8440 -3.3050 18 7 2.0184 -0.6906 1.1962 19 6 2.1472 -0.0182 2.3571 20 8 1.8576 1.1617 2.4117 21 6 2.6389 -0.7128 3.5603 22 6 2.9749 -2.0636 3.5175 23 7 3.4158 -2.6877 4.5928 24 6 3.5639 -2.0849 5.7568 25 6 3.2567 -0.7405 5.9043 26 7 3.3030 0.1471 6.9567 27 1 3.5924 -0.0618 7.8587 28 6 2.8752 1.3693 6.5231 29 6 2.5528 1.2995 5.2177 30 6 2.7869 -0.0235 4.7851 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6053 -1.7199 -1.2951 35 1 1.7517 -0.1584 -2.1370 36 1 3.7995 -1.2884 -0.3433 37 1 3.6095 -2.5191 -2.4308 38 1 3.7557 -0.9573 -3.2721 39 1 5.7756 -2.5701 -4.0338 40 1 8.2103 -3.8257 -5.9405 41 1 2.2491 -1.6318 1.1527 42 1 2.8729 -2.6080 2.5905 43 1 3.9295 -2.6449 6.6049 44 1 2.8059 2.2570 7.1344 45 1 2.1852 2.1122 4.6088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699369839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:32 Heat of formation + Delta-G solvation = 4.292031 kcal Electronic energy + Delta-G solvation = -29042.829799 eV Core-core repulsion = 24867.940270 eV Total energy + Delta-G solvation = -4174.889528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -42.05872 -39.85002 -38.34344 -38.12552 -36.66145 -34.25234 -33.63071 -32.92668 -31.40881 -31.15525 -30.22413 -29.51972 -27.57855 -25.15206 -24.76851 -23.26390 -22.87529 -22.00261 -20.99649 -20.59486 -19.29179 -18.74830 -17.88958 -17.64469 -16.96737 -16.38428 -16.04731 -15.49282 -15.41484 -15.15690 -15.01333 -14.82264 -14.50008 -14.28509 -14.05366 -13.85362 -13.53105 -13.46302 -13.05929 -12.96956 -12.71479 -12.61681 -12.42467 -12.25500 -11.91967 -11.71246 -11.58884 -11.45150 -11.05095 -10.95139 -10.44478 -10.37820 -10.37611 -10.19957 -9.56350 -9.49085 -9.16685 -8.94525 -8.44983 -8.23480 -8.06566 -7.94125 -6.39981 -3.80605 0.24248 1.16044 2.40805 2.64070 2.84362 3.04749 3.19471 3.27998 3.34423 3.78242 3.92481 4.05410 4.13385 4.30664 4.38316 4.47265 4.59946 4.78337 4.87404 4.94104 5.03232 5.07326 5.20478 5.24036 5.29498 5.38557 5.45801 5.54648 5.59203 5.64939 5.79006 5.91273 5.96133 5.99481 6.09944 6.13564 6.27859 6.33372 6.43516 6.56952 7.02286 7.17194 7.41221 7.57179 7.61866 7.70200 8.08256 8.17928 8.63257 9.19933 9.56144 10.07812 10.77785 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.002353 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.278590 B =11896.945556 C =13511.480919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.100 0.900 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.581 6.581 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 N -0.718 5.718 19 C 0.571 3.429 20 O -0.530 6.530 21 C -0.143 4.143 22 C 0.103 3.897 23 N -0.472 5.472 24 C 0.139 3.861 25 C 0.018 3.982 26 N -0.578 5.578 27 H 0.422 0.578 28 C 0.067 3.933 29 C -0.191 4.191 30 C -0.020 4.020 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.033 0.967 35 H 0.088 0.912 36 H 0.348 0.652 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.396 0.604 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.179 0.821 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.247 3.934 20.367 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.118 0.882 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.465 6.465 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.370 5.370 19 C 0.358 3.642 20 O -0.408 6.408 21 C -0.148 4.148 22 C -0.049 4.049 23 N -0.180 5.180 24 C -0.027 4.027 25 C -0.092 4.092 26 N -0.180 5.180 27 H 0.260 0.740 28 C -0.063 4.063 29 C -0.216 4.216 30 C -0.032 4.032 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.167 0.833 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.231 0.769 42 H 0.175 0.825 43 H 0.174 0.826 44 H 0.196 0.804 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.646 4.732 20.578 26.280 hybrid contribution 0.511 -0.968 0.025 1.095 sum -15.135 3.764 20.603 25.840 Atomic orbital electron populations 1.22152 0.94966 1.02112 1.02770 1.21057 0.93426 0.98557 0.82842 0.88230 1.22318 0.88854 0.99029 0.97822 1.60007 1.07473 1.57592 1.04970 1.21695 0.95149 0.96969 0.94451 1.19813 0.88091 0.84267 0.85316 1.90539 1.71105 1.51394 1.33486 1.41861 1.07408 1.50979 1.19823 1.19702 0.81534 1.35044 1.06504 0.87946 1.25254 1.00671 0.96816 0.95215 1.69610 1.36687 1.38702 1.09376 0.85862 0.82216 0.78854 0.77399 1.20429 1.20927 1.19398 1.45928 1.67542 1.13833 1.09739 1.17804 0.77425 0.86384 0.82561 1.90743 1.49921 1.15209 1.84884 1.20396 1.05879 0.94917 0.93639 1.22628 0.94875 0.90539 0.96892 1.67587 1.13835 1.38023 0.98550 1.21944 0.96503 0.88245 0.96003 1.19348 1.07156 0.93760 0.88961 1.41763 1.56965 1.08255 1.11062 0.74041 1.22224 0.99622 0.88431 0.96067 1.20901 1.09325 0.96867 0.94461 1.18166 0.98957 0.94586 0.91455 0.91860 0.91334 0.92524 0.94919 0.89361 0.83253 0.93817 0.89437 0.77467 0.91897 0.76902 0.82522 0.82552 0.80427 0.82257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.16 0.35 -1.15 16 2 C 0.15 1.67 2.88 -67.93 -0.20 1.48 16 3 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 4 C 0.05 0.58 5.30 -3.82 -0.02 0.56 16 5 N -0.67 -10.67 6.12 -115.05 -0.70 -11.37 16 6 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 7 C 0.44 10.46 7.82 -10.98 -0.09 10.38 16 8 O -0.58 -16.06 15.78 5.55 0.09 -15.97 16 9 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 10 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 11 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 14 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 18 N -0.72 -8.35 4.31 -54.89 -0.24 -8.59 16 19 C 0.57 7.94 7.73 -12.54 -0.10 7.84 16 20 O -0.53 -8.71 14.89 5.27 0.08 -8.63 16 21 C -0.14 -1.86 5.91 -104.63 -0.62 -2.47 16 22 C 0.10 1.22 10.71 -17.14 -0.18 1.04 16 23 N -0.47 -5.67 10.30 -12.85 -0.13 -5.80 16 24 C 0.14 1.37 11.21 -17.35 -0.19 1.17 16 25 C 0.02 0.18 7.31 -84.00 -0.61 -0.44 16 26 N -0.58 -3.82 6.13 -10.64 -0.07 -3.88 16 27 H 0.42 1.21 8.96 -40.82 -0.37 0.85 16 28 C 0.07 0.47 11.83 -16.72 -0.20 0.28 16 29 C -0.19 -2.10 10.09 -39.75 -0.40 -2.50 16 30 C -0.02 -0.25 6.04 -106.59 -0.64 -0.89 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.35 5.74 7.28 -39.29 -0.29 5.46 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.40 3.86 6.23 -40.82 -0.25 3.61 16 42 H 0.16 1.50 6.42 -52.49 -0.34 1.16 16 43 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 44 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.16 1.87 7.19 -52.49 -0.38 1.50 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -36.91 384.54 -8.36 -45.26 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -5.65 Total: 17.25 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -3.17 Total: 8.06 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -0.47 Total: -68.03 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.17 Total: -24.60 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.91 -8.36 -45.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699369839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.556 kcal (2) G-P(sol) polarization free energy of solvation -36.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds