Wall clock time and date at job start Wed Apr 1 2020 04:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 N 1.46905 * 109.47019 * 184.99887 * 4 2 1 6 6 C 1.46901 * 111.00168 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.46911 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00122 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99752 * 180.02562 * 7 6 5 10 10 C 1.37100 * 119.99761 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00039 * 0.02562 * 10 9 7 12 12 C 1.38947 * 119.99520 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00358 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99809 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47177 * 89.99939 * 14 12 10 16 16 H 1.48501 * 109.47034 * 210.00179 * 14 12 10 17 17 H 1.48496 * 109.46939 * 330.00091 * 14 12 10 18 18 N 1.46504 * 109.46883 * 120.00066 * 2 1 3 19 19 C 1.34779 * 119.99783 * 274.99286 * 18 2 1 20 20 O 1.21613 * 119.99652 * 0.02562 * 19 18 2 21 21 C 1.47373 * 119.99951 * 180.02562 * 19 18 2 22 22 C 1.39261 * 120.83483 * 359.97438 * 21 19 18 23 23 N 1.31909 * 120.96670 * 179.97438 * 22 21 19 24 24 C 1.31924 * 122.72142 * 0.02562 * 23 22 21 25 25 C 1.38689 * 120.79204 * 359.97438 * 24 23 22 26 26 N 1.37750 * 134.30141 * 180.02562 * 25 24 23 27 27 H 0.97003 * 125.56377 * 0.02562 * 26 25 24 28 28 C 1.36560 * 108.88083 * 180.02562 * 26 25 24 29 29 C 1.34642 * 109.66097 * 359.97438 * 28 26 25 30 30 C 1.40978 * 118.84369 * 359.74964 * 25 24 23 31 31 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 33 33 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 35 35 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 36 36 H 1.00900 * 110.99539 * 56.04548 * 5 4 2 37 37 H 1.08996 * 109.47029 * 299.99968 * 6 5 4 38 38 H 1.09002 * 109.46992 * 60.00059 * 6 5 4 39 39 H 0.97003 * 119.99807 * 0.02562 * 9 7 6 40 40 H 0.97003 * 120.00338 * 179.97438 * 13 12 10 41 41 H 0.97003 * 120.00173 * 95.00359 * 18 2 1 42 42 H 1.07991 * 119.51311 * 359.96477 * 22 21 19 43 43 H 1.08003 * 119.60107 * 180.02562 * 24 23 22 44 44 H 1.08002 * 125.16651 * 179.97438 * 28 26 25 45 45 H 1.07997 * 126.09274 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.5040 -0.8268 -1.1905 6 6 4.0303 -1.5151 -2.3768 7 6 5.5316 -1.6047 -2.2807 8 8 6.1066 -1.1404 -1.3189 9 7 6.2354 -2.1998 -3.2641 10 6 7.6012 -2.2808 -3.1770 11 1 8.1131 -1.8681 -2.3202 12 6 8.3267 -2.8948 -4.1905 13 7 7.7038 -3.3974 -5.2328 14 14 10.1876 -3.0059 -4.0716 15 1 10.5652 -4.2638 -3.3786 16 1 10.7722 -2.9981 -5.4367 17 1 10.7048 -1.8440 -3.3050 18 7 2.0184 -0.6906 1.1962 19 6 2.1472 -0.0182 2.3571 20 8 1.8576 1.1617 2.4117 21 6 2.6389 -0.7128 3.5603 22 6 2.9749 -2.0636 3.5175 23 7 3.4158 -2.6877 4.5928 24 6 3.5639 -2.0849 5.7568 25 6 3.2567 -0.7405 5.9043 26 7 3.3030 0.1471 6.9567 27 1 3.5924 -0.0618 7.8587 28 6 2.8752 1.3693 6.5231 29 6 2.5528 1.2995 5.2177 30 6 2.7869 -0.0235 4.7851 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6053 -1.7199 -1.2951 35 1 1.7517 -0.1584 -2.1370 36 1 3.7995 -1.2884 -0.3433 37 1 3.6095 -2.5191 -2.4308 38 1 3.7557 -0.9573 -3.2721 39 1 5.7756 -2.5701 -4.0338 40 1 8.2103 -3.8257 -5.9405 41 1 2.2491 -1.6318 1.1527 42 1 2.8729 -2.6080 2.5905 43 1 3.9295 -2.6449 6.6049 44 1 2.8059 2.2570 7.1344 45 1 2.1852 2.1122 4.6088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699369839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:30 Heat of formation + Delta-G solvation = -26.011339 kcal Electronic energy + Delta-G solvation = -29044.143851 eV Core-core repulsion = 24867.940270 eV Total energy + Delta-G solvation = -4176.203581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.80211 -40.84525 -40.11255 -38.98970 -37.83098 -36.03064 -35.10066 -33.78565 -33.25383 -32.25548 -30.98449 -30.32850 -28.96691 -26.71885 -25.75687 -24.61513 -23.66980 -22.88070 -21.76218 -21.57094 -21.07727 -19.93506 -19.54858 -18.57147 -17.86251 -17.73478 -17.15062 -16.94300 -16.38016 -16.31393 -16.09876 -16.01050 -15.71833 -15.58634 -15.35264 -15.08563 -15.00623 -14.32313 -14.26340 -14.02052 -13.77356 -13.54760 -13.43715 -13.32007 -13.09515 -13.03549 -13.01462 -12.79003 -12.65571 -12.41811 -12.12884 -11.93577 -11.50916 -11.41291 -11.21586 -10.50336 -10.37002 -10.13410 -10.01189 -9.67801 -9.31582 -9.00043 -8.46711 -5.95195 -0.57932 0.36051 1.37554 1.41280 1.54048 1.63745 1.90884 2.03193 2.05906 2.13146 2.29174 2.89059 2.91145 3.20691 3.34197 3.51676 3.62238 3.77952 3.87410 3.88019 4.09157 4.17609 4.21386 4.28572 4.38428 4.44058 4.51498 4.60153 4.63944 4.69474 4.74786 4.76592 4.80923 5.08280 5.17310 5.28920 5.37044 5.40933 5.50379 5.55019 5.80868 5.87604 6.09709 6.36216 6.46798 6.56063 6.60775 6.88204 7.13125 7.18702 7.56816 8.12851 8.70617 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.002353 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.278590 B =11896.945556 C =13511.480919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.068 0.932 4 C 0.056 3.944 5 N -0.689 5.689 6 C 0.065 3.935 7 C 0.435 3.565 8 O -0.626 6.626 9 N -0.572 5.572 10 C -0.334 4.334 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.270 1.270 16 H -0.269 1.269 17 H -0.275 1.275 18 N -0.710 5.710 19 C 0.567 3.433 20 O -0.568 6.568 21 C -0.175 4.175 22 C 0.102 3.898 23 N -0.499 5.499 24 C 0.148 3.852 25 C 0.007 3.993 26 N -0.555 5.555 27 H 0.443 0.557 28 C 0.108 3.892 29 C -0.242 4.242 30 C -0.050 4.050 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.341 0.659 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.405 0.595 42 H 0.170 0.830 43 H 0.194 0.806 44 H 0.226 0.774 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.654 3.071 21.457 27.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.087 0.913 4 C -0.073 4.073 5 N -0.322 5.322 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.210 5.210 10 C -0.463 4.463 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.195 1.195 16 H -0.194 1.194 17 H -0.200 1.200 18 N -0.362 5.362 19 C 0.355 3.645 20 O -0.448 6.448 21 C -0.180 4.180 22 C -0.050 4.050 23 N -0.208 5.208 24 C -0.017 4.017 25 C -0.103 4.103 26 N -0.159 5.159 27 H 0.286 0.714 28 C -0.025 4.025 29 C -0.266 4.266 30 C -0.062 4.062 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.160 0.840 37 H 0.092 0.908 38 H 0.126 0.874 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.242 0.758 42 H 0.187 0.813 43 H 0.211 0.789 44 H 0.242 0.758 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.077 3.820 21.657 27.241 hybrid contribution 0.618 -0.637 -0.190 0.907 sum -15.460 3.183 21.467 26.645 Atomic orbital electron populations 1.22061 0.92929 1.03212 1.02762 1.21040 0.94883 0.96961 0.82863 0.91338 1.22385 0.86098 1.00702 0.98106 1.59982 1.10362 1.57679 1.04159 1.21561 0.90082 0.99247 0.95793 1.20974 0.90818 0.82138 0.83798 1.90508 1.72904 1.52769 1.35040 1.41920 1.06813 1.51670 1.20570 1.19633 0.83162 1.36909 1.06634 0.90612 1.26009 1.04815 0.95838 0.94522 1.69662 1.38243 1.38470 1.09606 0.84958 0.76970 0.78700 0.77895 1.19523 1.19416 1.20022 1.45887 1.66868 1.14187 1.09259 1.18086 0.76969 0.86082 0.83384 1.90706 1.51835 1.16704 1.85542 1.20432 1.08181 0.95638 0.93796 1.22830 0.94296 0.90227 0.97640 1.67649 1.15243 1.38566 0.99314 1.22545 0.94486 0.88407 0.96271 1.19397 1.07569 0.94143 0.89238 1.41795 1.55346 1.07380 1.11386 0.71430 1.22820 0.95351 0.89449 0.94841 1.20919 1.12889 0.96311 0.96483 1.18589 0.99523 0.95750 0.92289 0.93595 0.89612 0.90782 0.92088 0.87937 0.83954 0.90813 0.87444 0.76854 0.91269 0.75810 0.81273 0.78877 0.75760 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.48 71.98 0.68 -2.02 16 2 C 0.15 3.39 2.88 44.99 0.13 3.51 16 3 H 0.07 2.02 7.58 -2.39 -0.02 2.01 16 4 C 0.06 1.20 5.30 86.30 0.46 1.65 16 5 N -0.69 -21.58 6.12 -517.92 -3.17 -24.75 16 6 C 0.07 2.18 6.17 85.56 0.53 2.71 16 7 C 0.44 20.93 7.82 87.66 0.69 21.61 16 8 O -0.63 -35.67 15.78 -3.07 -0.05 -35.72 16 9 N -0.57 -29.58 5.29 -306.98 -1.62 -31.20 16 10 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 11 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 12 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 13 N -0.92 -49.75 13.05 21.66 0.28 -49.46 16 14 Si 0.99 43.51 29.55 68.60 2.03 45.53 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 16 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 18 N -0.71 -17.14 4.31 -445.84 -1.92 -19.06 16 19 C 0.57 16.98 7.73 86.65 0.67 17.65 16 20 O -0.57 -20.37 14.89 -4.07 -0.06 -20.43 16 21 C -0.17 -4.85 5.91 -19.87 -0.12 -4.96 16 22 C 0.10 2.50 10.71 84.93 0.91 3.41 16 23 N -0.50 -11.89 10.30 -194.56 -2.00 -13.89 16 24 C 0.15 2.72 11.21 84.79 0.95 3.67 16 25 C 0.01 0.14 7.31 38.99 0.29 0.42 16 26 N -0.55 -5.90 6.13 -187.56 -1.15 -7.05 16 27 H 0.44 0.89 8.96 -92.71 -0.83 0.06 16 28 C 0.11 1.30 11.83 83.13 0.98 2.29 16 29 C -0.24 -5.50 10.09 22.16 0.22 -5.28 16 30 C -0.05 -1.29 6.04 -21.14 -0.13 -1.42 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 35 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.34 11.35 7.28 -89.69 -0.65 10.69 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 40 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 41 H 0.41 8.04 6.23 -92.71 -0.58 7.47 16 42 H 0.17 3.37 6.42 -2.92 -0.02 3.35 16 43 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 44 H 0.23 0.48 8.06 -2.91 -0.02 0.45 16 45 H 0.14 3.65 7.19 -2.91 -0.02 3.63 16 Total: -1.00 -84.86 384.54 -1.83 -86.69 By element: Atomic # 1 Polarization: 46.39 SS G_CDS: -1.70 Total: 44.69 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: 7.54 Total: 24.64 kcal Atomic # 7 Polarization: -135.82 SS G_CDS: -9.58 Total: -145.41 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -0.11 Total: -56.15 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -84.86 -1.83 -86.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699369839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.681 kcal (2) G-P(sol) polarization free energy of solvation -84.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds