Wall clock time and date at job start Wed Apr 1 2020 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46731 * 2 1 4 4 C 1.52998 * 109.46989 * 240.00437 * 2 1 3 5 5 N 1.46897 * 109.46919 * 184.99928 * 4 2 1 6 6 C 1.46907 * 110.99890 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47085 * 179.97438 * 6 5 4 8 8 O 1.21298 * 120.00087 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00193 * 179.97438 * 7 6 5 10 10 C 1.37087 * 120.00268 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00386 * 0.02562 * 10 9 7 12 12 C 1.38956 * 120.00396 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00337 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99567 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47350 * 89.99653 * 14 12 10 16 16 H 1.48503 * 109.47184 * 209.99892 * 14 12 10 17 17 H 1.48499 * 109.47093 * 329.99773 * 14 12 10 18 18 N 1.46497 * 109.47133 * 120.00104 * 2 1 3 19 19 C 1.34772 * 120.00300 * 275.00096 * 18 2 1 20 20 O 1.21670 * 120.00175 * 359.97438 * 19 18 2 21 21 C 1.46927 * 120.00150 * 180.02562 * 19 18 2 22 22 C 1.36349 * 126.82707 * 359.68347 * 21 19 18 23 23 N 1.35577 * 109.75121 * 180.26298 * 22 21 19 24 24 H 0.97003 * 124.72629 * 180.02562 * 23 22 21 25 25 C 1.37700 * 110.55842 * 359.97438 * 23 22 21 26 26 N 1.32672 * 132.94452 * 180.02562 * 25 23 22 27 27 C 1.31607 * 121.69226 * 180.02562 * 26 25 23 28 28 C 1.38590 * 121.53531 * 359.96049 * 27 26 25 29 29 C 1.38331 * 119.33124 * 0.02562 * 28 27 26 30 30 C 1.39350 * 118.05275 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47052 * 299.99664 * 1 2 3 32 32 H 1.08994 * 109.47588 * 59.99906 * 1 2 3 33 33 H 1.08998 * 109.47045 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46981 * 304.99793 * 4 2 1 35 35 H 1.08998 * 109.47590 * 64.99640 * 4 2 1 36 36 H 1.00899 * 111.00284 * 303.95055 * 5 4 2 37 37 H 1.08996 * 109.46715 * 300.00200 * 6 5 4 38 38 H 1.08999 * 109.46965 * 59.99668 * 6 5 4 39 39 H 0.97006 * 119.99896 * 0.02562 * 9 7 6 40 40 H 0.97007 * 119.99926 * 179.97438 * 13 12 10 41 41 H 0.97003 * 119.99839 * 94.99882 * 18 2 1 42 42 H 1.07998 * 125.12748 * 0.24194 * 22 21 19 43 43 H 1.07994 * 119.23160 * 179.97438 * 27 26 25 44 44 H 1.07998 * 120.33089 * 180.02562 * 28 27 26 45 45 H 1.08000 * 120.97453 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8265 -1.1905 6 6 4.0303 -1.5157 -2.3763 7 6 5.5316 -1.6042 -2.2809 8 8 6.1067 -1.1393 -1.3194 9 7 6.2353 -2.2007 -3.2634 10 6 7.6011 -2.2817 -3.1764 11 1 8.1131 -1.8677 -2.3203 12 6 8.3266 -2.8972 -4.1891 13 7 9.6357 -2.9743 -4.1060 14 14 7.4409 -3.6138 -5.6695 15 1 7.3216 -2.5761 -6.7252 16 1 8.2113 -4.7691 -6.1959 17 1 6.0856 -4.0658 -5.2645 18 7 2.0184 -0.6906 1.1961 19 6 2.1471 -0.0184 2.3571 20 8 1.8582 1.1623 2.4117 21 6 2.6374 -0.7109 3.5566 22 6 2.9944 -2.0232 3.6541 23 7 3.3906 -2.2973 4.9214 24 1 3.6906 -3.1664 5.2308 25 6 3.3091 -1.1700 5.7080 26 7 3.5807 -0.9379 6.9857 27 6 3.4179 0.2530 7.5218 28 6 2.9545 1.3260 6.7771 29 6 2.6551 1.1432 5.4390 30 6 2.8348 -0.1270 4.8948 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6054 -1.7197 -1.2952 35 1 1.7516 -0.1582 -2.1370 36 1 3.9280 0.0827 -1.0824 37 1 3.6094 -2.5197 -2.4296 38 1 3.7556 -0.9586 -3.2720 39 1 5.7754 -2.5729 -4.0322 40 1 10.1422 -3.4043 -4.8128 41 1 2.2490 -1.6318 1.1525 42 1 2.9655 -2.7369 2.8440 43 1 3.6510 0.3974 8.5664 44 1 2.8285 2.2951 7.2369 45 1 2.2919 1.9608 4.8340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699390780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:46 Heat of formation + Delta-G solvation = 6.252015 kcal Electronic energy + Delta-G solvation = -28870.739755 eV Core-core repulsion = 24695.935217 eV Total energy + Delta-G solvation = -4174.804537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -41.88253 -39.55256 -38.50531 -38.04118 -36.63692 -34.34630 -33.73405 -33.11610 -31.71832 -31.46708 -30.29500 -29.18074 -27.78489 -25.10662 -24.00817 -23.76813 -23.01114 -22.70107 -21.08354 -19.87155 -19.40661 -18.73042 -18.36969 -17.18339 -16.66986 -16.43668 -16.10779 -15.82641 -15.51300 -15.17542 -14.96066 -14.92585 -14.74924 -14.15139 -14.06442 -13.86744 -13.42090 -13.34289 -13.20814 -13.07569 -12.71763 -12.64849 -12.46022 -12.27278 -12.21215 -12.09937 -11.74047 -11.71762 -11.19748 -10.99194 -10.63185 -10.56089 -10.06597 -10.00896 -9.60784 -9.55265 -9.06974 -8.77078 -8.64093 -8.33156 -8.25510 -8.19850 -6.34240 -3.85883 0.68581 1.10204 1.83123 2.42189 2.98749 3.03346 3.11919 3.15231 3.38251 3.70222 3.75803 3.99657 4.07154 4.23052 4.38284 4.51346 4.70667 4.76001 4.80232 4.95842 5.00024 5.09147 5.16739 5.21087 5.24433 5.33659 5.36699 5.50684 5.54916 5.57721 5.63122 5.75332 5.87523 5.89032 6.02105 6.03981 6.11639 6.19050 6.50401 6.62635 6.90218 6.99342 7.47585 7.54673 7.60318 7.74433 8.11207 8.32812 8.56248 8.91840 9.38983 9.79162 10.78847 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012669 B = 0.002255 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.648864 B =12414.701472 C =13903.832812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.088 0.912 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.048 3.952 7 C 0.448 3.552 8 O -0.563 6.563 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.706 5.706 19 C 0.594 3.406 20 O -0.550 6.550 21 C -0.216 4.216 22 C 0.126 3.874 23 N -0.565 5.565 24 H 0.425 0.575 25 C 0.276 3.724 26 N -0.497 5.497 27 C 0.134 3.866 28 C -0.198 4.198 29 C -0.019 4.019 30 C -0.107 4.107 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.353 0.647 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.402 0.598 42 H 0.189 0.811 43 H 0.162 0.838 44 H 0.139 0.861 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.897 1.797 13.865 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.106 0.894 4 C -0.082 4.082 5 N -0.300 5.300 6 C -0.085 4.085 7 C 0.234 3.766 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.357 5.357 19 C 0.382 3.618 20 O -0.428 6.428 21 C -0.227 4.227 22 C -0.007 4.007 23 N -0.170 5.170 24 H 0.263 0.737 25 C 0.044 3.956 26 N -0.210 5.210 27 C -0.031 4.031 28 C -0.220 4.220 29 C -0.045 4.045 30 C -0.114 4.114 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.173 0.827 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.236 0.764 42 H 0.206 0.794 43 H 0.179 0.821 44 H 0.157 0.843 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.151 1.482 15.328 25.362 hybrid contribution -0.528 -0.322 -2.459 2.535 sum -20.679 1.159 12.870 24.384 Atomic orbital electron populations 1.22143 0.94993 1.02182 1.02666 1.20915 0.93543 0.97579 0.83734 0.89413 1.22325 0.89330 1.00722 0.95872 1.60056 1.03206 1.27155 1.39576 1.21712 0.95030 1.00009 0.91745 1.19714 0.87955 0.84187 0.84739 1.90584 1.70983 1.50418 1.32502 1.42210 1.07857 1.52955 1.19991 1.19426 0.79527 1.36000 1.08457 0.86310 1.25049 0.95447 0.97652 0.98057 1.69622 1.05088 1.43312 1.34048 0.86666 0.79554 0.79804 0.83301 1.19653 1.20172 1.19510 1.45614 1.67200 1.14116 1.08736 1.17091 0.76809 0.85993 0.81911 1.90748 1.51458 1.15461 1.85170 1.19975 1.15359 0.93497 0.93912 1.22232 0.95494 0.96725 0.86231 1.41317 1.56773 1.10901 1.07991 0.73679 1.18351 1.00668 0.86747 0.89825 1.66473 1.19538 1.25115 1.09873 1.22449 0.94663 0.86336 0.99681 1.21965 1.04355 1.00855 0.94788 1.21144 0.93440 0.95556 0.94369 1.19424 1.04410 0.94437 0.93154 0.91768 0.91668 0.92377 0.90456 0.93816 0.82683 0.89495 0.93715 0.79719 0.91592 0.76360 0.79428 0.82134 0.84325 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.15 1.50 2.81 -67.93 -0.19 1.31 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 C 0.05 0.46 5.24 -3.83 -0.02 0.44 16 5 N -0.67 -9.19 5.85 -115.06 -0.67 -9.87 16 6 C 0.05 0.72 6.17 -4.97 -0.03 0.69 16 7 C 0.45 9.77 7.82 -10.99 -0.09 9.68 16 8 O -0.56 -14.75 15.78 5.54 0.09 -14.67 16 9 N -0.59 -13.67 5.09 -10.96 -0.06 -13.72 16 10 C -0.31 -8.52 10.16 -14.94 -0.15 -8.67 16 11 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 12 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 13 N -0.88 -25.52 13.96 55.50 0.77 -24.75 16 14 Si 0.88 18.99 27.74 -169.99 -4.71 14.28 16 15 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 18 N -0.71 -7.53 4.79 -55.04 -0.26 -7.79 16 19 C 0.59 7.89 7.76 -12.74 -0.10 7.79 16 20 O -0.55 -8.96 15.92 5.22 0.08 -8.87 16 21 C -0.22 -2.64 6.27 -103.36 -0.65 -3.28 16 22 C 0.13 1.13 11.33 -16.58 -0.19 0.94 16 23 N -0.57 -5.18 5.97 -11.97 -0.07 -5.25 16 24 H 0.42 2.66 8.96 -40.82 -0.37 2.29 16 25 C 0.28 3.35 8.41 -155.52 -1.31 2.04 16 26 N -0.50 -5.93 10.39 -12.29 -0.13 -6.06 16 27 C 0.13 1.28 11.15 -17.52 -0.20 1.09 16 28 C -0.20 -1.85 10.10 -39.42 -0.40 -2.25 16 29 C -0.02 -0.22 9.97 -39.13 -0.39 -0.61 16 30 C -0.11 -1.40 6.28 -104.93 -0.66 -2.06 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.35 5.50 8.43 -39.29 -0.33 5.17 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.37 7.47 5.76 -40.82 -0.24 7.23 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.40 3.57 7.49 -40.82 -0.31 3.27 16 42 H 0.19 0.98 7.38 -52.49 -0.39 0.59 16 43 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 44 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.14 1.71 7.55 -52.49 -0.40 1.32 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -37.27 386.64 -9.02 -46.29 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -5.78 Total: 17.45 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -4.11 Total: 7.13 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -0.42 Total: -67.44 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.17 Total: -23.54 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.27 -9.02 -46.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699390780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.544 kcal (2) G-P(sol) polarization free energy of solvation -37.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds