Wall clock time and date at job start Wed Apr 1 2020 04:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46731 * 2 1 4 4 C 1.52998 * 109.46989 * 240.00437 * 2 1 3 5 5 N 1.46897 * 109.46919 * 184.99928 * 4 2 1 6 6 C 1.46907 * 110.99890 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47085 * 179.97438 * 6 5 4 8 8 O 1.21298 * 120.00087 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00193 * 179.97438 * 7 6 5 10 10 C 1.37087 * 120.00268 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00386 * 0.02562 * 10 9 7 12 12 C 1.38956 * 120.00396 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00337 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99567 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47350 * 89.99653 * 14 12 10 16 16 H 1.48503 * 109.47184 * 209.99892 * 14 12 10 17 17 H 1.48499 * 109.47093 * 329.99773 * 14 12 10 18 18 N 1.46497 * 109.47133 * 120.00104 * 2 1 3 19 19 C 1.34772 * 120.00300 * 275.00096 * 18 2 1 20 20 O 1.21670 * 120.00175 * 359.97438 * 19 18 2 21 21 C 1.46927 * 120.00150 * 180.02562 * 19 18 2 22 22 C 1.36349 * 126.82707 * 359.68347 * 21 19 18 23 23 N 1.35577 * 109.75121 * 180.26298 * 22 21 19 24 24 H 0.97003 * 124.72629 * 180.02562 * 23 22 21 25 25 C 1.37700 * 110.55842 * 359.97438 * 23 22 21 26 26 N 1.32672 * 132.94452 * 180.02562 * 25 23 22 27 27 C 1.31607 * 121.69226 * 180.02562 * 26 25 23 28 28 C 1.38590 * 121.53531 * 359.96049 * 27 26 25 29 29 C 1.38331 * 119.33124 * 0.02562 * 28 27 26 30 30 C 1.39350 * 118.05275 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47052 * 299.99664 * 1 2 3 32 32 H 1.08994 * 109.47588 * 59.99906 * 1 2 3 33 33 H 1.08998 * 109.47045 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46981 * 304.99793 * 4 2 1 35 35 H 1.08998 * 109.47590 * 64.99640 * 4 2 1 36 36 H 1.00899 * 111.00284 * 303.95055 * 5 4 2 37 37 H 1.08996 * 109.46715 * 300.00200 * 6 5 4 38 38 H 1.08999 * 109.46965 * 59.99668 * 6 5 4 39 39 H 0.97006 * 119.99896 * 0.02562 * 9 7 6 40 40 H 0.97007 * 119.99926 * 179.97438 * 13 12 10 41 41 H 0.97003 * 119.99839 * 94.99882 * 18 2 1 42 42 H 1.07998 * 125.12748 * 0.24194 * 22 21 19 43 43 H 1.07994 * 119.23160 * 179.97438 * 27 26 25 44 44 H 1.07998 * 120.33089 * 180.02562 * 28 27 26 45 45 H 1.08000 * 120.97453 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8265 -1.1905 6 6 4.0303 -1.5157 -2.3763 7 6 5.5316 -1.6042 -2.2809 8 8 6.1067 -1.1393 -1.3194 9 7 6.2353 -2.2007 -3.2634 10 6 7.6011 -2.2817 -3.1764 11 1 8.1131 -1.8677 -2.3203 12 6 8.3266 -2.8972 -4.1891 13 7 9.6357 -2.9743 -4.1060 14 14 7.4409 -3.6138 -5.6695 15 1 7.3216 -2.5761 -6.7252 16 1 8.2113 -4.7691 -6.1959 17 1 6.0856 -4.0658 -5.2645 18 7 2.0184 -0.6906 1.1961 19 6 2.1471 -0.0184 2.3571 20 8 1.8582 1.1623 2.4117 21 6 2.6374 -0.7109 3.5566 22 6 2.9944 -2.0232 3.6541 23 7 3.3906 -2.2973 4.9214 24 1 3.6906 -3.1664 5.2308 25 6 3.3091 -1.1700 5.7080 26 7 3.5807 -0.9379 6.9857 27 6 3.4179 0.2530 7.5218 28 6 2.9545 1.3260 6.7771 29 6 2.6551 1.1432 5.4390 30 6 2.8348 -0.1270 4.8948 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6054 -1.7197 -1.2952 35 1 1.7516 -0.1582 -2.1370 36 1 3.9280 0.0827 -1.0824 37 1 3.6094 -2.5197 -2.4296 38 1 3.7556 -0.9586 -3.2720 39 1 5.7754 -2.5729 -4.0322 40 1 10.1422 -3.4043 -4.8128 41 1 2.2490 -1.6318 1.1525 42 1 2.9655 -2.7369 2.8440 43 1 3.6510 0.3974 8.5664 44 1 2.8285 2.2951 7.2369 45 1 2.2919 1.9608 4.8340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699390780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:43 Heat of formation + Delta-G solvation = -24.801249 kcal Electronic energy + Delta-G solvation = -28872.086325 eV Core-core repulsion = 24695.935217 eV Total energy + Delta-G solvation = -4176.151108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 6.00 seconds Orbital eigenvalues (eV) -42.68491 -40.54068 -40.17715 -38.83968 -37.68084 -36.04001 -35.07371 -33.95474 -33.72376 -32.37943 -31.09502 -29.99195 -29.04066 -26.61090 -24.90359 -24.75752 -24.12427 -23.49046 -21.92952 -21.22864 -20.78201 -20.22964 -19.52580 -18.08149 -17.81782 -17.30849 -17.27965 -16.93084 -16.66152 -16.40424 -16.20983 -15.83546 -15.71451 -15.49818 -15.16225 -14.97463 -14.78226 -14.49349 -14.27029 -14.20848 -14.03128 -13.86095 -13.42423 -13.24802 -13.11139 -12.98898 -12.95127 -12.77214 -12.64351 -12.39854 -11.96842 -11.78561 -11.49607 -11.43316 -11.06972 -10.43397 -10.40151 -10.23467 -9.98414 -9.56610 -9.30664 -9.14617 -8.40139 -6.01126 -0.12689 0.28509 0.96905 1.31058 1.37166 1.46051 1.69217 1.99459 2.24387 2.29395 2.47717 2.75265 2.90938 3.16831 3.42830 3.50194 3.64857 3.73581 3.89057 4.02936 4.15669 4.16760 4.28200 4.35966 4.41540 4.48573 4.52734 4.57510 4.62726 4.71805 4.82304 4.84668 4.88309 5.12314 5.21750 5.32659 5.34398 5.37168 5.53925 5.65495 5.83201 5.91983 6.06881 6.23553 6.32911 6.61408 6.74288 6.90398 6.94838 7.41096 7.42324 8.00110 8.77670 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012669 B = 0.002255 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.648864 B =12414.701472 C =13903.832812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.059 0.941 4 C 0.056 3.944 5 N -0.682 5.682 6 C 0.063 3.937 7 C 0.447 3.553 8 O -0.616 6.616 9 N -0.592 5.592 10 C -0.327 4.327 11 H 0.052 0.948 12 C -0.018 4.018 13 N -0.937 5.937 14 Si 0.967 3.033 15 H -0.259 1.259 16 H -0.277 1.277 17 H -0.226 1.226 18 N -0.695 5.695 19 C 0.589 3.411 20 O -0.593 6.593 21 C -0.259 4.259 22 C 0.155 3.845 23 N -0.554 5.554 24 H 0.439 0.561 25 C 0.254 3.746 26 N -0.513 5.513 27 C 0.129 3.871 28 C -0.186 4.186 29 C -0.047 4.047 30 C -0.136 4.136 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.339 0.661 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.390 0.610 40 H 0.278 0.722 41 H 0.412 0.588 42 H 0.229 0.771 43 H 0.198 0.802 44 H 0.170 0.830 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.928 -0.329 12.220 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.078 0.922 4 C -0.073 4.073 5 N -0.314 5.314 6 C -0.069 4.069 7 C 0.235 3.765 8 O -0.500 6.500 9 N -0.234 5.234 10 C -0.457 4.457 11 H 0.070 0.930 12 C -0.216 4.216 13 N -0.578 5.578 14 Si 0.786 3.214 15 H -0.184 1.184 16 H -0.202 1.202 17 H -0.149 1.149 18 N -0.346 5.346 19 C 0.378 3.622 20 O -0.476 6.476 21 C -0.270 4.270 22 C 0.020 3.980 23 N -0.160 5.160 24 H 0.280 0.720 25 C 0.022 3.978 26 N -0.226 5.226 27 C -0.036 4.036 28 C -0.207 4.207 29 C -0.073 4.073 30 C -0.142 4.142 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.156 0.844 37 H 0.141 0.859 38 H 0.094 0.906 39 H 0.226 0.774 40 H 0.088 0.912 41 H 0.249 0.751 42 H 0.245 0.755 43 H 0.214 0.786 44 H 0.188 0.812 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.222 -0.689 13.687 26.964 hybrid contribution 0.469 0.427 -1.775 1.885 sum -22.753 -0.261 11.912 25.684 Atomic orbital electron populations 1.22054 0.93259 1.03321 1.02393 1.20966 0.94784 0.96284 0.83860 0.92244 1.22384 0.86556 1.02437 0.95919 1.60070 1.05541 1.26391 1.39410 1.21649 0.89094 1.02677 0.93457 1.21117 0.90977 0.81391 0.82982 1.90569 1.73040 1.51876 1.34525 1.42032 1.06010 1.53956 1.21373 1.18982 0.82070 1.37318 1.07309 0.92965 1.26161 0.96200 0.97390 1.01895 1.69816 1.07604 1.44537 1.35817 0.85342 0.79853 0.78706 0.77453 1.18350 1.20244 1.14931 1.45552 1.66373 1.14448 1.08182 1.17333 0.76377 0.85611 0.82834 1.90710 1.53638 1.17307 1.85910 1.20029 1.18299 0.95053 0.93570 1.22785 0.92331 0.96134 0.86713 1.41373 1.55947 1.10938 1.07732 0.71975 1.18592 1.01498 0.87523 0.90150 1.66560 1.20012 1.26277 1.09795 1.23121 0.93660 0.85633 1.01204 1.22312 1.02461 1.02274 0.93652 1.21272 0.95055 0.95313 0.95686 1.19792 1.05097 0.95267 0.94085 0.93994 0.90023 0.90433 0.87726 0.91856 0.84356 0.85943 0.90556 0.77409 0.91220 0.75145 0.75472 0.78559 0.81245 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.48 71.98 0.68 -1.56 16 2 C 0.15 2.77 2.81 44.99 0.13 2.90 16 3 H 0.06 1.48 7.58 -2.38 -0.02 1.47 16 4 C 0.06 0.88 5.24 86.30 0.45 1.33 16 5 N -0.68 -17.13 5.85 -517.94 -3.03 -20.16 16 6 C 0.06 1.66 6.17 85.55 0.53 2.19 16 7 C 0.45 19.07 7.82 87.66 0.69 19.75 16 8 O -0.62 -33.24 15.78 -3.09 -0.05 -33.29 16 9 N -0.59 -26.73 5.09 -306.98 -1.56 -28.30 16 10 C -0.33 -18.88 10.16 84.04 0.85 -18.02 16 11 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 12 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 13 N -0.94 -56.20 13.96 21.66 0.30 -55.90 16 14 Si 0.97 37.66 27.74 68.60 1.90 39.56 16 15 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 16 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.23 -7.18 6.52 99.48 0.65 -6.53 16 18 N -0.70 -14.29 4.79 -446.27 -2.14 -16.43 16 19 C 0.59 16.29 7.76 86.52 0.67 16.96 16 20 O -0.59 -20.82 15.92 -4.25 -0.07 -20.88 16 21 C -0.26 -6.49 6.27 -19.05 -0.12 -6.61 16 22 C 0.15 2.60 11.33 83.67 0.95 3.55 16 23 N -0.55 -9.72 5.97 -191.80 -1.15 -10.86 16 24 H 0.44 4.90 8.96 -92.71 -0.83 4.07 16 25 C 0.25 6.22 8.41 133.76 1.13 7.34 16 26 N -0.51 -12.08 10.39 -192.80 -2.00 -14.08 16 27 C 0.13 2.35 11.15 84.81 0.95 3.29 16 28 C -0.19 -3.44 10.10 22.38 0.23 -3.22 16 29 C -0.05 -1.18 9.97 22.56 0.23 -0.96 16 30 C -0.14 -3.71 6.28 -20.06 -0.13 -3.83 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.34 10.33 8.43 -89.69 -0.76 9.58 16 37 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.39 14.30 5.76 -92.70 -0.53 13.77 16 40 H 0.28 15.25 8.31 -92.70 -0.77 14.48 16 41 H 0.41 6.46 7.49 -92.71 -0.69 5.77 16 42 H 0.23 1.72 7.38 -2.91 -0.02 1.70 16 43 H 0.20 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 45 H 0.13 3.52 7.55 -2.91 -0.02 3.50 16 Total: -1.00 -91.13 386.64 -1.89 -93.02 By element: Atomic # 1 Polarization: 46.52 SS G_CDS: -1.79 Total: 44.73 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: 7.69 Total: 22.59 kcal Atomic # 7 Polarization: -136.16 SS G_CDS: -9.57 Total: -145.73 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.12 Total: -54.17 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.90 Total: 39.56 kcal Total: -91.13 -1.89 -93.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699390780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.220 kcal (2) G-P(sol) polarization free energy of solvation -91.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.00 seconds