Wall clock time and date at job start Wed Apr 1 2020 04:40:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.47532 * 2 1
4 4 C 1.52998 * 109.47073 * 119.99920 * 2 1 3
5 5 N 1.46900 * 109.47209 * 174.99748 * 4 2 1
6 6 C 1.46899 * 111.00147 * 180.02562 * 5 4 2
7 7 C 1.50700 * 109.47552 * 180.02562 * 6 5 4
8 8 O 1.21300 * 119.99494 * 359.97438 * 7 6 5
9 9 N 1.34776 * 120.00345 * 179.97438 * 7 6 5
10 10 C 1.37101 * 119.99724 * 179.97438 * 9 7 6
11 11 H 1.07995 * 120.00220 * 0.02562 * 10 9 7
12 12 C 1.38953 * 119.99453 * 179.97438 * 10 9 7
13 13 N 1.31408 * 120.00298 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 119.99772 * 180.02562 * 12 10 9
15 15 H 1.48503 * 109.46789 * 90.00034 * 14 12 10
16 16 H 1.48494 * 109.47181 * 210.00365 * 14 12 10
17 17 H 1.48502 * 109.47257 * 330.00414 * 14 12 10
18 18 N 1.46496 * 109.47071 * 240.00169 * 2 1 3
19 19 C 1.34777 * 120.00119 * 85.00047 * 18 2 1
20 20 O 1.21643 * 120.00039 * 0.02562 * 19 18 2
21 21 C 1.47069 * 119.99882 * 179.97438 * 19 18 2
22 22 C 1.35909 * 125.42362 * 180.02562 * 21 19 18
23 23 C 1.41427 * 107.67472 * 180.02562 * 22 21 19
24 24 C 1.39841 * 134.34571 * 179.97438 * 23 22 21
25 25 N 1.31559 * 120.03904 * 180.02562 * 24 23 22
26 26 C 1.32369 * 122.32457 * 0.02562 * 25 24 23
27 27 C 1.36636 * 121.64194 * 0.02562 * 26 25 24
28 28 C 1.39435 * 119.01452 * 359.97438 * 27 26 25
29 29 N 1.36879 * 134.32996 * 179.67963 * 28 27 26
30 30 H 0.97008 * 125.58617 * 0.02562 * 29 28 27
31 31 H 1.08997 * 109.47110 * 180.02562 * 1 2 3
32 32 H 1.09004 * 109.46945 * 300.00374 * 1 2 3
33 33 H 1.09000 * 109.46936 * 59.99733 * 1 2 3
34 34 H 1.08995 * 109.47393 * 295.00229 * 4 2 1
35 35 H 1.08999 * 109.46878 * 55.00027 * 4 2 1
36 36 H 1.00900 * 111.00093 * 56.05016 * 5 4 2
37 37 H 1.09006 * 109.47262 * 300.00462 * 6 5 4
38 38 H 1.09002 * 109.47208 * 60.00096 * 6 5 4
39 39 H 0.97001 * 119.99799 * 0.02562 * 9 7 6
40 40 H 0.96995 * 120.00158 * 179.97438 * 13 12 10
41 41 H 0.97003 * 119.99536 * 265.00097 * 18 2 1
42 42 H 1.08003 * 126.16068 * 0.02562 * 22 21 19
43 43 H 1.07997 * 119.98213 * 0.03027 * 24 23 22
44 44 H 1.07996 * 119.17584 * 180.02562 * 26 25 24
45 45 H 1.08001 * 120.49459 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7212 1.2492
5 7 3.5040 -0.8267 1.1904
6 6 4.0303 -1.5159 2.3761
7 6 5.5316 -1.6045 2.2808
8 8 6.1067 -1.1396 1.3193
9 7 6.2354 -2.2002 3.2638
10 6 7.6013 -2.2812 3.1767
11 1 8.1132 -1.8673 2.3206
12 6 8.3268 -2.8949 4.1904
13 7 7.7039 -3.3981 5.2323
14 14 10.1878 -3.0046 4.0722
15 1 10.7954 -1.8052 4.7026
16 1 10.6574 -4.2252 4.7756
17 1 10.5901 -3.0706 2.6442
18 7 2.0183 -0.6906 -1.1962
19 6 2.1471 -0.0182 -2.3571
20 8 1.8582 1.1622 -2.4116
21 6 2.6378 -0.7114 -3.5578
22 6 2.8099 -0.1432 -4.7804
23 6 3.2942 -1.1439 -5.6546
24 6 3.6522 -1.1714 -7.0061
25 7 4.0806 -2.2894 -7.5513
26 6 4.1904 -3.4154 -6.8640
27 6 3.8621 -3.4814 -5.5393
28 6 3.4009 -2.3321 -4.8987
29 7 2.9900 -2.0467 -3.6246
30 1 2.9544 -2.6774 -2.8883
31 1 -0.3633 -1.0276 0.0005
32 1 -0.3633 0.5139 0.8900
33 1 -0.3633 0.5139 -0.8900
34 1 1.7516 -0.1584 2.1369
35 1 1.6054 -1.7198 1.2951
36 1 3.9280 0.0825 1.0824
37 1 3.7557 -0.9589 3.2720
38 1 3.6094 -2.5200 2.4295
39 1 5.7755 -2.5723 4.0325
40 1 8.2103 -3.8269 5.9398
41 1 2.2490 -1.6317 -1.1526
42 1 2.6125 0.8869 -5.0379
43 1 3.5771 -0.2743 -7.6026
44 1 4.5483 -4.3039 -7.3628
45 1 3.9585 -4.4101 -4.9964
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699408930.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:40:56
Heat of formation + Delta-G solvation = -3.822180 kcal
Electronic energy + Delta-G solvation = -28748.635347 eV
Core-core repulsion = 24573.393960 eV
Total energy + Delta-G solvation = -4175.241387 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 2.89 seconds
Orbital eigenvalues (eV)
-42.08443 -39.90523 -38.44241 -38.07648 -36.76888 -34.45324 -33.77743 -32.65267
-31.74674 -31.27629 -30.53293 -29.41839 -27.71346 -25.32238 -24.81818 -23.35795
-23.07345 -22.16104 -21.13422 -20.44005 -19.37487 -18.98199 -17.97317 -17.84755
-16.84667 -16.11692 -15.83360 -15.64584 -15.59467 -15.24727 -14.84695 -14.67976
-14.58937 -14.37829 -14.28567 -14.09359 -13.85476 -13.58854 -13.41357 -13.30587
-12.96407 -12.69165 -12.58179 -12.13200 -11.91678 -11.75417 -11.64655 -11.56024
-11.10594 -11.08874 -10.44742 -10.36336 -10.35895 -10.28635 -9.78241 -9.58096
-9.34776 -9.07848 -8.59261 -8.22974 -8.22217 -8.04060 -6.48887 -3.89988
0.37968 1.28585 1.79045 2.51243 2.84881 3.12811 3.13550 3.22115
3.27874 3.69792 3.81690 3.94460 4.19388 4.26279 4.29829 4.48092
4.63320 4.68998 4.83325 4.91095 4.99592 5.03034 5.12316 5.18680
5.19765 5.33012 5.42071 5.44393 5.47046 5.57904 5.66537 5.70143
5.79114 5.83920 5.92008 6.05868 6.15455 6.22240 6.27466 6.54382
6.94196 7.00894 7.28368 7.45923 7.48512 7.84606 7.92595 7.98565
8.53077 9.10601 9.46054 9.97118 10.68693
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.008974 B = 0.002459 C = 0.002021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3119.284498 B =11383.165704 C =13851.507838
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.146 3.854
3 H 0.091 0.909
4 C 0.046 3.954
5 N -0.669 5.669
6 C 0.050 3.950
7 C 0.438 3.562
8 O -0.583 6.583
9 N -0.562 5.562
10 C -0.301 4.301
11 H 0.103 0.897
12 C 0.023 3.977
13 N -0.901 5.901
14 Si 0.930 3.070
15 H -0.278 1.278
16 H -0.283 1.283
17 H -0.269 1.269
18 N -0.703 5.703
19 C 0.586 3.414
20 O -0.526 6.526
21 C 0.023 3.977
22 C -0.092 4.092
23 C -0.176 4.176
24 C 0.176 3.824
25 N -0.508 5.508
26 C 0.104 3.896
27 C -0.179 4.179
28 C 0.142 3.858
29 N -0.566 5.566
30 H 0.423 0.577
31 H 0.058 0.942
32 H 0.068 0.932
33 H 0.064 0.936
34 H 0.047 0.953
35 H 0.077 0.923
36 H 0.352 0.648
37 H 0.045 0.955
38 H 0.085 0.915
39 H 0.392 0.608
40 H 0.272 0.728
41 H 0.401 0.599
42 H 0.162 0.838
43 H 0.161 0.839
44 H 0.157 0.843
45 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.122 0.723 -14.423 21.644
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.041 3.959
3 H 0.109 0.891
4 C -0.084 4.084
5 N -0.302 5.302
6 C -0.082 4.082
7 C 0.223 3.777
8 O -0.467 6.467
9 N -0.199 5.199
10 C -0.430 4.430
11 H 0.121 0.879
12 C -0.179 4.179
13 N -0.542 5.542
14 Si 0.757 3.243
15 H -0.204 1.204
16 H -0.209 1.209
17 H -0.194 1.194
18 N -0.353 5.353
19 C 0.372 3.628
20 O -0.402 6.402
21 C -0.087 4.087
22 C -0.120 4.120
23 C -0.183 4.183
24 C 0.009 3.991
25 N -0.217 5.217
26 C -0.044 4.044
27 C -0.202 4.202
28 C 0.024 3.976
29 N -0.170 5.170
30 H 0.261 0.739
31 H 0.077 0.923
32 H 0.087 0.913
33 H 0.083 0.917
34 H 0.065 0.935
35 H 0.096 0.904
36 H 0.172 0.828
37 H 0.063 0.937
38 H 0.104 0.896
39 H 0.225 0.775
40 H 0.082 0.918
41 H 0.235 0.765
42 H 0.179 0.821
43 H 0.178 0.822
44 H 0.175 0.825
45 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -15.643 1.062 -15.983 22.389
hybrid contribution 0.498 -0.621 2.756 2.869
sum -15.145 0.441 -13.227 20.113
Atomic orbital electron populations
1.22150 0.94614 1.02364 1.02937 1.21026 0.93806 0.97635 0.83436
0.89083 1.22330 0.89632 1.00742 0.95675 1.60079 1.02966 1.27027
1.40106 1.21680 0.95394 0.99789 0.91355 1.19789 0.87972 0.84771
0.85121 1.90541 1.71088 1.51879 1.33217 1.41866 1.07436 1.50803
1.19776 1.19700 0.81463 1.35269 1.06573 0.87933 1.25268 1.00766
0.96660 0.95180 1.69604 1.36774 1.38500 1.09367 0.85857 0.82092
0.77705 0.78661 1.20352 1.20862 1.19369 1.45720 1.66439 1.14111
1.09037 1.17091 0.77724 0.86204 0.81760 1.90844 1.50515 1.14455
1.84417 1.20309 1.08269 0.83628 0.96455 1.20853 1.01555 0.99616
0.89995 1.19225 1.08743 0.94107 0.96204 1.22514 0.90628 0.96133
0.89874 1.67664 1.15855 0.99126 1.39079 1.22096 0.95813 0.96169
0.90327 1.20838 1.05943 0.96958 0.96459 1.18376 0.98487 0.95938
0.84842 1.41893 1.55719 1.09565 1.09843 0.73854 0.92281 0.91275
0.91689 0.93513 0.90426 0.82827 0.93713 0.89632 0.77472 0.91808
0.76479 0.82085 0.82155 0.82543 0.84794
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16
2 C 0.15 1.43 2.81 -67.93 -0.19 1.24 16
3 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16
4 C 0.05 0.46 5.24 -3.82 -0.02 0.44 16
5 N -0.67 -9.45 5.85 -115.06 -0.67 -10.12 16
6 C 0.05 0.81 6.17 -4.98 -0.03 0.78 16
7 C 0.44 9.89 7.82 -10.99 -0.09 9.81 16
8 O -0.58 -15.38 15.78 5.54 0.09 -15.30 16
9 N -0.56 -13.82 5.29 -10.96 -0.06 -13.88 16
10 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16
11 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16
12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16
13 N -0.90 -24.07 13.05 55.50 0.72 -23.34 16
14 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16
15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
17 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16
18 N -0.70 -7.21 4.80 -55.00 -0.26 -7.48 16
19 C 0.59 7.24 7.76 -12.68 -0.10 7.14 16
20 O -0.53 -7.97 16.50 5.24 0.09 -7.88 16
21 C 0.02 0.26 6.97 -82.22 -0.57 -0.32 16
22 C -0.09 -1.03 10.53 -39.20 -0.41 -1.44 16
23 C -0.18 -1.93 6.21 -106.95 -0.66 -2.60 16
24 C 0.18 1.78 11.29 -17.07 -0.19 1.59 16
25 N -0.51 -5.59 10.33 -13.18 -0.14 -5.73 16
26 C 0.10 0.98 11.09 -17.90 -0.20 0.78 16
27 C -0.18 -1.66 10.09 -39.71 -0.40 -2.06 16
28 C 0.14 1.52 7.32 -84.03 -0.62 0.90 16
29 N -0.57 -5.53 6.05 -7.31 -0.04 -5.57 16
30 H 0.42 3.17 8.12 -40.82 -0.33 2.84 16
31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
36 H 0.35 5.56 8.43 -39.29 -0.33 5.22 16
37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16
39 H 0.39 9.18 7.90 -40.82 -0.32 8.85 16
40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16
41 H 0.40 3.58 7.66 -40.82 -0.31 3.27 16
42 H 0.16 1.57 8.06 -52.48 -0.42 1.15 16
43 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16
44 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16
45 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16
LS Contribution 390.87 15.07 5.89 5.89
Total: -1.00 -34.20 390.87 -8.63 -42.84
By element:
Atomic # 1 Polarization: 23.21 SS G_CDS: -5.85 Total: 17.36 kcal
Atomic # 6 Polarization: 10.83 SS G_CDS: -3.37 Total: 7.45 kcal
Atomic # 7 Polarization: -65.67 SS G_CDS: -0.45 Total: -66.12 kcal
Atomic # 8 Polarization: -23.35 SS G_CDS: 0.17 Total: -23.18 kcal
Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -34.20 -8.63 -42.84 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699408930.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.015 kcal
(2) G-P(sol) polarization free energy of solvation -34.203 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.812 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.822 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.89 seconds