Wall clock time and date at job start Wed Apr 1 2020 04:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47180 * 2 1 4 4 N 1.46501 * 109.47503 * 120.00304 * 2 1 3 5 5 C 1.36936 * 119.99883 * 275.00016 * 4 2 1 6 6 H 1.08001 * 119.99815 * 0.02562 * 5 4 2 7 7 C 1.38808 * 119.99565 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00624 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99828 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47273 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47223 * 300.00159 * 9 7 5 12 12 H 1.48500 * 109.47265 * 59.99780 * 9 7 5 13 13 C 1.53000 * 109.47367 * 240.00593 * 2 1 3 14 14 H 1.08997 * 109.51930 * 184.89640 * 13 2 1 15 15 C 1.53294 * 109.51258 * 64.74111 * 13 2 1 16 16 N 1.47154 * 108.38578 * 187.77578 * 15 13 2 17 17 C 1.34770 * 120.98650 * 230.55622 * 16 15 13 18 18 O 1.21587 * 120.00375 * 174.10327 * 17 16 15 19 19 C 1.47584 * 119.99701 * 354.10490 * 17 16 15 20 20 C 1.41527 * 120.56803 * 142.72126 * 19 17 16 21 21 N 1.30899 * 120.16677 * 180.02562 * 20 19 17 22 22 C 1.34248 * 121.27636 * 0.02562 * 21 20 19 23 23 N 1.32431 * 131.64153 * 180.02562 * 22 21 20 24 24 C 1.33694 * 109.33083 * 180.02562 * 23 22 21 25 25 C 1.34912 * 108.65591 * 359.97438 * 24 23 22 26 26 N 1.37007 * 107.05486 * 0.02562 * 25 24 23 27 27 C 1.35973 * 132.54879 * 180.32863 * 26 25 24 28 28 C 1.47158 * 118.03562 * 50.53771 * 16 15 13 29 29 C 1.53302 * 108.37949 * 309.46526 * 28 16 15 30 30 O 1.42958 * 109.22618 * 52.30524 * 29 28 16 31 31 H 1.09002 * 109.47245 * 299.99303 * 1 2 3 32 32 H 1.08993 * 109.47452 * 59.99885 * 1 2 3 33 33 H 1.09013 * 109.46928 * 179.97438 * 1 2 3 34 34 H 0.97002 * 119.99777 * 94.99827 * 4 2 1 35 35 H 0.96993 * 120.00331 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.68540 * 307.50135 * 15 13 2 37 37 H 1.08999 * 109.68455 * 68.05889 * 15 13 2 38 38 H 1.08004 * 119.91213 * 359.97438 * 20 19 17 39 39 H 1.08001 * 125.67197 * 180.02562 * 24 23 22 40 40 H 1.08003 * 126.46967 * 180.02562 * 25 24 23 41 41 H 1.08005 * 120.58213 * 359.91783 * 27 26 25 42 42 H 1.08999 * 109.68460 * 189.73994 * 28 16 15 43 43 H 1.09003 * 109.68335 * 69.18724 * 28 16 15 44 44 H 1.09000 * 109.51320 * 292.37519 * 29 28 16 45 45 H 1.09001 * 109.54820 * 172.24968 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8919 1.0402 2.4243 7 6 2.6115 -0.6622 3.5091 8 7 2.9246 -1.9392 3.4500 9 14 2.7893 0.2694 5.1184 10 1 3.2973 -0.6493 6.1687 11 1 3.7445 1.3920 4.9377 12 1 1.4668 0.8062 5.5285 13 6 2.0400 -0.7211 -1.2493 14 1 3.1264 -0.7981 -1.2073 15 6 1.6294 0.0666 -2.4987 16 7 1.9647 -0.7370 -3.6850 17 6 2.6679 -0.2076 -4.7055 18 8 3.0275 -0.9143 -5.6273 19 6 3.0017 1.2300 -4.7042 20 6 4.2510 1.6793 -5.1943 21 7 4.5390 2.9562 -5.1890 22 6 3.6678 3.8653 -4.7233 23 7 3.7415 5.1837 -4.6223 24 6 2.6084 5.6506 -4.0881 25 6 1.7870 4.6095 -3.8402 26 7 2.4450 3.4752 -4.2371 27 6 2.0988 2.1603 -4.2273 28 6 1.5098 -2.1360 -3.7239 29 6 1.9262 -2.8163 -2.4147 30 8 1.4705 -2.0311 -1.3105 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0278 -0.0005 34 1 2.2491 -1.6318 1.1525 35 1 3.2472 -2.3967 4.2421 36 1 0.5566 0.2578 -2.4760 37 1 2.1707 1.0121 -2.5309 38 1 4.9688 0.9667 -5.5730 39 1 2.3870 6.6887 -3.8888 40 1 0.7976 4.6605 -3.4102 41 1 1.1360 1.8484 -3.8503 42 1 1.9718 -2.6489 -4.5674 43 1 0.4248 -2.1665 -3.8246 44 1 3.0123 -2.9009 -2.3778 45 1 1.4816 -3.8102 -2.3627 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700608259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:57 Heat of formation + Delta-G solvation = 67.457937 kcal Electronic energy + Delta-G solvation = -30733.515029 eV Core-core repulsion = 26561.364580 eV Total energy + Delta-G solvation = -4172.150449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.91 seconds Orbital eigenvalues (eV) -43.44180 -40.85581 -38.96471 -38.03338 -35.60032 -35.40382 -34.66567 -32.69096 -31.84497 -30.34685 -29.64405 -28.64401 -27.45198 -25.51698 -24.94779 -24.54307 -23.39407 -22.52137 -22.19204 -20.15576 -19.86699 -19.05167 -18.20642 -17.40351 -17.17798 -16.88446 -16.55868 -16.17893 -16.01318 -15.59313 -15.31634 -14.73312 -14.64584 -14.53174 -14.28065 -14.15941 -13.79563 -13.55106 -13.41814 -13.02805 -12.75322 -12.71808 -12.63664 -12.19305 -12.00415 -11.53157 -11.30272 -11.03366 -10.95878 -10.84169 -10.73151 -10.59082 -10.40380 -10.19442 -10.05323 -10.01670 -9.76206 -9.56436 -8.99320 -8.78041 -8.58617 -7.04750 -5.82337 -3.12421 -0.15887 0.44326 1.78646 2.08790 2.32048 2.58241 3.17678 3.19960 3.39206 3.43966 3.45145 3.65382 3.70269 3.80533 4.06517 4.34285 4.44187 4.62021 4.64503 4.68411 4.83897 4.89827 4.96641 4.99759 5.03914 5.19077 5.20711 5.37810 5.48837 5.55358 5.61676 5.63453 5.74896 5.79273 5.95154 6.03391 6.04530 6.08454 6.27841 6.44695 6.62878 6.84507 7.00606 7.08127 7.29539 7.52813 7.60324 7.61377 8.35210 9.47452 10.02995 10.39154 11.39660 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.003471 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.855810 B = 8065.989390 C = 9991.836455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.056 0.944 4 N -0.718 5.718 5 C -0.246 4.246 6 H 0.069 0.931 7 C -0.009 4.009 8 N -0.929 5.929 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.076 3.924 14 H 0.067 0.933 15 C 0.063 3.937 16 N -0.605 5.605 17 C 0.580 3.420 18 O -0.523 6.523 19 C -0.216 4.216 20 C 0.219 3.781 21 N -0.435 5.435 22 C 0.386 3.614 23 N -0.470 5.470 24 C 0.054 3.946 25 C -0.092 4.092 26 N -0.400 5.400 27 C 0.158 3.842 28 C 0.079 3.921 29 C 0.045 3.955 30 O -0.355 6.355 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.059 0.941 34 H 0.390 0.610 35 H 0.256 0.744 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.192 0.808 39 H 0.193 0.807 40 H 0.193 0.807 41 H 0.186 0.814 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 6.139 -18.175 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.074 0.926 4 N -0.359 5.359 5 C -0.377 4.377 6 H 0.087 0.913 7 C -0.205 4.205 8 N -0.576 5.576 9 Si 0.737 3.263 10 H -0.216 1.216 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.016 3.984 14 H 0.085 0.915 15 C -0.060 4.060 16 N -0.338 5.338 17 C 0.366 3.634 18 O -0.399 6.399 19 C -0.225 4.225 20 C 0.030 3.970 21 N -0.145 5.145 22 C 0.038 3.962 23 N -0.191 5.191 24 C -0.097 4.097 25 C -0.222 4.222 26 N -0.078 5.078 27 C 0.022 3.978 28 C -0.043 4.043 29 C -0.033 4.033 30 O -0.273 6.273 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.225 0.775 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.209 0.791 39 H 0.209 0.791 40 H 0.210 0.790 41 H 0.203 0.797 42 H 0.121 0.879 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.379 6.884 -18.859 20.549 hybrid contribution -1.250 -0.478 1.418 1.949 sum -5.629 6.406 -17.442 19.415 Atomic orbital electron populations 1.22444 0.98623 1.01856 0.99414 1.20182 0.92872 0.94396 0.85125 0.92630 1.42325 1.77840 1.11000 1.04772 1.19158 1.37335 0.93818 0.87346 0.91270 1.24738 1.01842 0.95923 0.98034 1.69658 1.50276 1.08629 1.29043 0.86297 0.77804 0.78648 0.83578 1.21627 1.21240 1.21222 1.22970 0.97959 0.83388 0.94052 0.91521 1.23042 1.02129 0.95429 0.85362 1.48098 1.54239 1.13354 1.18148 1.17487 0.77990 0.85628 0.82273 1.90832 1.52742 1.60867 1.35496 1.20705 0.98149 0.94747 1.08901 1.23367 0.93184 0.90848 0.89609 1.67893 1.28589 1.01162 1.16867 1.22222 0.81812 0.92194 1.00005 1.70752 1.23875 1.02896 1.21620 1.22728 0.88910 0.99973 0.98070 1.22835 1.02403 0.83513 1.13443 1.44045 1.16909 1.06210 1.40643 1.22887 1.00594 0.81025 0.93261 1.22458 1.00521 0.80695 1.00608 1.22957 0.99835 0.95303 0.85180 1.88127 1.67593 1.25262 1.46329 0.92714 0.95000 0.92198 0.77546 0.93373 0.89218 0.89309 0.79088 0.79054 0.79002 0.79747 0.87875 0.90152 0.92561 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.06 37.15 0.34 -2.26 16 2 C 0.19 3.27 2.77 -67.93 -0.19 3.08 16 3 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.72 -17.06 5.10 -53.43 -0.27 -17.33 16 5 C -0.25 -6.52 9.93 -15.06 -0.15 -6.67 16 6 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 7 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 8 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 9 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.08 1.10 2.61 -26.58 -0.07 1.03 16 14 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.06 0.65 4.18 -3.53 -0.01 0.64 16 16 N -0.60 -6.23 3.02 -173.48 -0.52 -6.75 16 17 C 0.58 6.38 7.38 -12.45 -0.09 6.29 16 18 O -0.52 -7.05 16.39 5.29 0.09 -6.96 16 19 C -0.22 -2.15 5.22 -104.87 -0.55 -2.70 16 20 C 0.22 2.32 10.89 -16.70 -0.18 2.14 16 21 N -0.43 -5.71 10.45 -13.37 -0.14 -5.85 16 22 C 0.39 5.14 8.91 -322.25 -2.87 2.26 16 23 N -0.47 -6.38 11.31 -14.41 -0.16 -6.54 16 24 C 0.05 0.50 11.82 -17.92 -0.21 0.29 16 25 C -0.09 -0.75 11.77 -16.42 -0.19 -0.94 16 26 N -0.40 -4.10 2.94 -63.76 -0.19 -4.29 16 27 C 0.16 1.36 8.47 -15.76 -0.13 1.22 16 28 C 0.08 0.76 6.65 -3.53 -0.02 0.74 16 29 C 0.05 0.51 6.98 37.31 0.26 0.77 16 30 O -0.36 -5.33 9.24 -35.23 -0.33 -5.66 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.03 0.38 6.41 -51.93 -0.33 0.05 16 33 H 0.06 1.04 7.56 -51.92 -0.39 0.64 16 34 H 0.39 10.14 7.58 -40.82 -0.31 9.83 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.09 0.79 6.13 -51.93 -0.32 0.47 16 37 H 0.09 0.83 4.87 -51.93 -0.25 0.58 16 38 H 0.19 1.61 8.06 -52.48 -0.42 1.18 16 39 H 0.19 1.07 8.06 -52.49 -0.42 0.64 16 40 H 0.19 0.80 8.06 -52.48 -0.42 0.37 16 41 H 0.19 1.05 6.30 -52.48 -0.33 0.72 16 42 H 0.10 0.98 7.06 -51.93 -0.37 0.62 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -35.18 369.55 -10.08 -45.26 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.65 Total: 6.92 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -4.18 Total: 5.56 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -0.56 Total: -67.46 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.24 Total: -12.61 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.18 -10.08 -45.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700608259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.716 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.91 seconds