Wall clock time and date at job start Wed Apr 1 2020 04:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47180 * 2 1 4 4 N 1.46501 * 109.47503 * 120.00304 * 2 1 3 5 5 C 1.36936 * 119.99883 * 275.00016 * 4 2 1 6 6 H 1.08001 * 119.99815 * 0.02562 * 5 4 2 7 7 C 1.38808 * 119.99565 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00624 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99828 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47273 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47223 * 300.00159 * 9 7 5 12 12 H 1.48500 * 109.47265 * 59.99780 * 9 7 5 13 13 C 1.53000 * 109.47367 * 240.00593 * 2 1 3 14 14 H 1.08997 * 109.51930 * 184.89640 * 13 2 1 15 15 C 1.53294 * 109.51258 * 64.74111 * 13 2 1 16 16 N 1.47154 * 108.38578 * 187.77578 * 15 13 2 17 17 C 1.34770 * 120.98650 * 230.55622 * 16 15 13 18 18 O 1.21587 * 120.00375 * 174.10327 * 17 16 15 19 19 C 1.47584 * 119.99701 * 354.10490 * 17 16 15 20 20 C 1.41527 * 120.56803 * 142.72126 * 19 17 16 21 21 N 1.30899 * 120.16677 * 180.02562 * 20 19 17 22 22 C 1.34248 * 121.27636 * 0.02562 * 21 20 19 23 23 N 1.32431 * 131.64153 * 180.02562 * 22 21 20 24 24 C 1.33694 * 109.33083 * 180.02562 * 23 22 21 25 25 C 1.34912 * 108.65591 * 359.97438 * 24 23 22 26 26 N 1.37007 * 107.05486 * 0.02562 * 25 24 23 27 27 C 1.35973 * 132.54879 * 180.32863 * 26 25 24 28 28 C 1.47158 * 118.03562 * 50.53771 * 16 15 13 29 29 C 1.53302 * 108.37949 * 309.46526 * 28 16 15 30 30 O 1.42958 * 109.22618 * 52.30524 * 29 28 16 31 31 H 1.09002 * 109.47245 * 299.99303 * 1 2 3 32 32 H 1.08993 * 109.47452 * 59.99885 * 1 2 3 33 33 H 1.09013 * 109.46928 * 179.97438 * 1 2 3 34 34 H 0.97002 * 119.99777 * 94.99827 * 4 2 1 35 35 H 0.96993 * 120.00331 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.68540 * 307.50135 * 15 13 2 37 37 H 1.08999 * 109.68455 * 68.05889 * 15 13 2 38 38 H 1.08004 * 119.91213 * 359.97438 * 20 19 17 39 39 H 1.08001 * 125.67197 * 180.02562 * 24 23 22 40 40 H 1.08003 * 126.46967 * 180.02562 * 25 24 23 41 41 H 1.08005 * 120.58213 * 359.91783 * 27 26 25 42 42 H 1.08999 * 109.68460 * 189.73994 * 28 16 15 43 43 H 1.09003 * 109.68335 * 69.18724 * 28 16 15 44 44 H 1.09000 * 109.51320 * 292.37519 * 29 28 16 45 45 H 1.09001 * 109.54820 * 172.24968 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8919 1.0402 2.4243 7 6 2.6115 -0.6622 3.5091 8 7 2.9246 -1.9392 3.4500 9 14 2.7893 0.2694 5.1184 10 1 3.2973 -0.6493 6.1687 11 1 3.7445 1.3920 4.9377 12 1 1.4668 0.8062 5.5285 13 6 2.0400 -0.7211 -1.2493 14 1 3.1264 -0.7981 -1.2073 15 6 1.6294 0.0666 -2.4987 16 7 1.9647 -0.7370 -3.6850 17 6 2.6679 -0.2076 -4.7055 18 8 3.0275 -0.9143 -5.6273 19 6 3.0017 1.2300 -4.7042 20 6 4.2510 1.6793 -5.1943 21 7 4.5390 2.9562 -5.1890 22 6 3.6678 3.8653 -4.7233 23 7 3.7415 5.1837 -4.6223 24 6 2.6084 5.6506 -4.0881 25 6 1.7870 4.6095 -3.8402 26 7 2.4450 3.4752 -4.2371 27 6 2.0988 2.1603 -4.2273 28 6 1.5098 -2.1360 -3.7239 29 6 1.9262 -2.8163 -2.4147 30 8 1.4705 -2.0311 -1.3105 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0278 -0.0005 34 1 2.2491 -1.6318 1.1525 35 1 3.2472 -2.3967 4.2421 36 1 0.5566 0.2578 -2.4760 37 1 2.1707 1.0121 -2.5309 38 1 4.9688 0.9667 -5.5730 39 1 2.3870 6.6887 -3.8888 40 1 0.7976 4.6605 -3.4102 41 1 1.1360 1.8484 -3.8503 42 1 1.9718 -2.6489 -4.5674 43 1 0.4248 -2.1665 -3.8246 44 1 3.0123 -2.9009 -2.3778 45 1 1.4816 -3.8102 -2.3627 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700608259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:54 Heat of formation + Delta-G solvation = 44.284535 kcal Electronic energy + Delta-G solvation = -30734.519903 eV Core-core repulsion = 26561.364580 eV Total energy + Delta-G solvation = -4173.155323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.18279 -41.74541 -39.95020 -38.88403 -37.03761 -36.32063 -35.54744 -34.32655 -32.77751 -31.68104 -30.40419 -29.92134 -28.55322 -26.53727 -26.07011 -25.49687 -24.73926 -23.55134 -22.91112 -21.32233 -20.83317 -19.85779 -19.24870 -19.03363 -17.97337 -17.80121 -17.46925 -17.08093 -16.81131 -16.76187 -16.51097 -16.04234 -15.72499 -15.50583 -15.20854 -15.10220 -14.83752 -14.69079 -14.39150 -14.33910 -13.97950 -13.65807 -13.56896 -13.37253 -13.07768 -12.84410 -12.76414 -12.43961 -12.40193 -12.22245 -11.89460 -11.84872 -11.62846 -11.56559 -11.36946 -11.15318 -10.91911 -10.90177 -10.33947 -9.69662 -9.30916 -8.98797 -7.91092 -5.19324 -0.86849 -0.32619 1.07803 1.31386 1.48540 1.50596 1.53465 1.56592 1.82507 2.37876 2.45657 2.57372 2.76687 2.87711 3.10228 3.31670 3.42425 3.50212 3.71425 3.78736 3.94950 3.96031 4.04325 4.15284 4.25286 4.26258 4.31790 4.38761 4.45783 4.50961 4.54617 4.61280 4.76846 4.85353 4.92354 4.97948 5.11970 5.16338 5.29357 5.30100 5.48149 5.53181 5.69741 6.01155 6.23909 6.30778 6.32123 6.76266 6.78257 7.37190 8.14579 8.36286 9.32243 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.003471 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.855810 B = 8065.989390 C = 9991.836455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.176 3.824 3 H 0.064 0.936 4 N -0.735 5.735 5 C -0.237 4.237 6 H 0.080 0.920 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.967 3.033 10 H -0.300 1.300 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.082 3.918 14 H 0.040 0.960 15 C 0.075 3.925 16 N -0.602 5.602 17 C 0.588 3.412 18 O -0.551 6.551 19 C -0.228 4.228 20 C 0.216 3.784 21 N -0.470 5.470 22 C 0.352 3.648 23 N -0.513 5.513 24 C 0.035 3.965 25 C -0.071 4.071 26 N -0.404 5.404 27 C 0.175 3.825 28 C 0.084 3.916 29 C 0.042 3.958 30 O -0.379 6.379 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.202 0.798 39 H 0.222 0.778 40 H 0.240 0.760 41 H 0.223 0.777 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.042 0.958 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.577 7.715 -18.827 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.067 3.933 3 H 0.082 0.918 4 N -0.375 5.375 5 C -0.369 4.369 6 H 0.097 0.903 7 C -0.268 4.268 8 N -0.621 5.621 9 Si 0.797 3.203 10 H -0.227 1.227 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.023 3.977 14 H 0.058 0.942 15 C -0.048 4.048 16 N -0.335 5.335 17 C 0.375 3.625 18 O -0.429 6.429 19 C -0.237 4.237 20 C 0.028 3.972 21 N -0.182 5.182 22 C 0.004 3.996 23 N -0.236 5.236 24 C -0.114 4.114 25 C -0.200 4.200 26 N -0.082 5.082 27 C 0.040 3.960 28 C -0.037 4.037 29 C -0.035 4.035 30 O -0.297 6.297 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.206 0.794 35 H 0.057 0.943 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.218 0.782 39 H 0.239 0.761 40 H 0.256 0.744 41 H 0.240 0.760 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.060 0.940 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.126 8.510 -19.547 22.478 hybrid contribution -0.445 -0.928 1.552 1.862 sum -7.572 7.583 -17.995 20.944 Atomic orbital electron populations 1.22256 0.96558 1.01267 1.00983 1.20486 0.94085 0.94538 0.84179 0.91796 1.42562 1.78329 1.10496 1.06125 1.19598 1.34763 0.94232 0.88271 0.90253 1.25504 1.03171 0.96758 1.01344 1.69822 1.52657 1.10274 1.29302 0.85305 0.77990 0.77297 0.79736 1.22659 1.20553 1.20259 1.22674 0.96294 0.84008 0.94752 0.94221 1.22968 1.03926 0.94782 0.83076 1.48097 1.53936 1.13642 1.17795 1.17493 0.77302 0.85757 0.81911 1.90824 1.53756 1.61665 1.36684 1.20553 0.98452 0.94488 1.10240 1.23578 0.93984 0.90408 0.89217 1.67837 1.29831 1.02026 1.18488 1.22277 0.83276 0.92340 1.01724 1.70670 1.26284 1.03704 1.22946 1.23394 0.88077 1.01966 0.97947 1.23657 1.03288 0.82083 1.10952 1.44178 1.16299 1.07206 1.40488 1.23366 1.01184 0.80103 0.91324 1.22471 1.01781 0.80166 0.99286 1.23122 0.99200 0.96000 0.85165 1.88086 1.67729 1.25744 1.48174 0.94586 0.89904 0.93855 0.79415 0.94253 0.86190 0.88066 0.78158 0.76124 0.74399 0.76021 0.87709 0.87892 0.94003 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 9.06 71.98 0.65 -3.68 16 2 C 0.18 5.87 2.77 44.99 0.12 5.99 16 3 H 0.06 2.04 8.08 -2.38 -0.02 2.02 16 4 N -0.74 -34.94 5.10 -322.94 -1.65 -36.59 16 5 C -0.24 -12.50 9.93 84.03 0.83 -11.66 16 6 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 7 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 8 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 9 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 10 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 13 C 0.08 2.25 2.61 30.69 0.08 2.33 16 14 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 15 C 0.08 1.26 4.18 86.35 0.36 1.62 16 16 N -0.60 -10.63 3.02 -821.02 -2.48 -13.11 16 17 C 0.59 11.72 7.38 86.71 0.64 12.36 16 18 O -0.55 -14.18 16.39 -3.99 -0.07 -14.24 16 19 C -0.23 -4.11 5.22 -20.03 -0.10 -4.21 16 20 C 0.22 4.56 10.89 85.64 0.93 5.49 16 21 N -0.47 -12.56 10.45 -196.21 -2.05 -14.61 16 22 C 0.35 9.16 8.91 261.29 2.33 11.49 16 23 N -0.51 -13.70 11.31 -199.52 -2.26 -15.96 16 24 C 0.04 0.58 11.82 83.64 0.99 1.56 16 25 C -0.07 -0.87 11.77 83.12 0.98 0.11 16 26 N -0.40 -7.12 2.94 -355.65 -1.04 -8.17 16 27 C 0.17 2.39 8.47 84.03 0.71 3.10 16 28 C 0.08 1.41 6.65 86.35 0.57 1.98 16 29 C 0.04 0.90 6.98 72.08 0.50 1.41 16 30 O -0.38 -10.89 9.24 -148.98 -1.38 -12.26 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.52 6.41 -2.39 -0.02 1.50 16 33 H 0.04 1.39 7.56 -2.38 -0.02 1.38 16 34 H 0.37 19.91 7.58 -92.71 -0.70 19.21 16 35 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.12 1.35 6.13 -2.39 -0.01 1.33 16 37 H 0.10 1.48 4.87 -2.39 -0.01 1.46 16 38 H 0.20 3.49 8.06 -2.91 -0.02 3.46 16 39 H 0.22 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.24 0.45 8.06 -2.91 -0.02 0.42 16 41 H 0.22 1.19 6.30 -2.91 -0.02 1.17 16 42 H 0.10 1.78 7.06 -2.39 -0.02 1.76 16 43 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -80.75 369.55 1.81 -78.95 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.34 Total: 23.25 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 10.07 Total: 24.12 kcal Atomic # 7 Polarization: -137.69 SS G_CDS: -9.20 Total: -146.88 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -1.44 Total: -26.50 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -80.75 1.81 -78.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700608259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.233 kcal (2) G-P(sol) polarization free energy of solvation -80.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds