Wall clock time and date at job start Wed Apr 1 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47171 * 2 1 4 4 C 1.52999 * 109.47177 * 120.00236 * 2 1 3 5 5 N 1.46493 * 109.47417 * 174.99765 * 4 2 1 6 6 C 1.34773 * 120.00198 * 179.97438 * 5 4 2 7 7 O 1.21723 * 120.00159 * 0.02562 * 6 5 4 8 8 C 1.46564 * 120.00303 * 179.97438 * 6 5 4 9 9 C 1.40561 * 126.57614 * 0.02562 * 8 6 5 10 10 N 1.30742 * 108.74250 * 180.02562 * 9 8 6 11 11 N 1.40026 * 109.60610 * 359.97438 * 10 9 8 12 12 C 1.36232 * 132.01104 * 180.02562 * 11 10 9 13 13 C 1.35195 * 120.70774 * 180.02562 * 12 11 10 14 14 C 1.40163 * 120.31342 * 359.97438 * 13 12 11 15 15 C 1.36452 * 119.40932 * 359.97438 * 14 13 12 16 16 C 1.36579 * 107.90482 * 0.02562 * 11 10 9 17 17 N 1.46902 * 109.46922 * 239.99851 * 2 1 3 18 18 C 1.46907 * 110.99710 * 85.00227 * 17 2 1 19 19 C 1.50702 * 109.47028 * 179.97438 * 18 17 2 20 20 O 1.21292 * 119.99858 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99644 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99456 * 179.97438 * 21 19 18 23 23 H 1.08004 * 120.00565 * 0.02562 * 22 21 19 24 24 C 1.38946 * 119.99917 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00199 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00252 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47114 * 89.99874 * 26 24 22 28 28 H 1.48498 * 109.47414 * 209.99696 * 26 24 22 29 29 H 1.48502 * 109.46993 * 330.00051 * 26 24 22 30 30 H 1.08996 * 109.47678 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46883 * 300.00162 * 1 2 3 32 32 H 1.09002 * 109.46830 * 59.99314 * 1 2 3 33 33 H 1.09006 * 109.47045 * 54.99517 * 4 2 1 34 34 H 1.09002 * 109.46868 * 294.99876 * 4 2 1 35 35 H 0.97001 * 120.00092 * 0.02562 * 5 4 2 36 36 H 1.07996 * 125.63174 * 0.03256 * 9 8 6 37 37 H 1.08003 * 119.65181 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.84287 * 179.69959 * 13 12 11 39 39 H 1.07992 * 120.29207 * 180.02562 * 14 13 12 40 40 H 1.07999 * 120.36993 * 179.97438 * 15 14 13 41 41 H 1.00897 * 110.99887 * 208.95315 * 17 2 1 42 42 H 1.08996 * 109.47275 * 299.99890 * 18 17 2 43 43 H 1.09003 * 109.46992 * 60.00164 * 18 17 2 44 44 H 0.96992 * 120.00676 * 0.02562 * 21 19 18 45 45 H 0.96997 * 120.00512 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1730 -1.4284 2.1911 7 8 3.5677 -1.8851 3.1433 8 6 5.6336 -1.5342 2.1322 9 6 6.4670 -1.0591 1.1049 10 7 7.7078 -1.3393 1.4070 11 7 7.7526 -2.0063 2.6374 12 6 8.7900 -2.4988 3.3703 13 6 8.5684 -3.1155 4.5528 14 6 7.2631 -3.2568 5.0434 15 6 6.2175 -2.7658 4.3170 16 6 6.4715 -2.1316 3.0940 17 7 2.0196 -0.6925 -1.1994 18 6 2.0824 0.2226 -2.3469 19 6 2.5884 -0.5215 -3.5558 20 8 2.8696 -1.6982 -3.4698 21 7 2.7295 0.1209 -4.7322 22 6 3.1904 -0.5559 -5.8317 23 1 3.4399 -1.6040 -5.7555 24 6 3.3353 0.1062 -7.0447 25 7 3.0313 1.3812 -7.1378 26 14 3.9626 -0.8162 -8.5432 27 1 2.8140 -1.3991 -9.2822 28 1 4.6971 0.1215 -9.4300 29 1 4.8751 -1.9041 -8.1086 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.6053 -1.7199 1.2951 34 1 1.7516 -0.1583 2.1369 35 1 3.9824 -0.4623 0.4319 36 1 6.1370 -0.5469 0.2132 37 1 9.8003 -2.3955 3.0028 38 1 9.4008 -3.5051 5.1201 39 1 7.0865 -3.7491 5.9882 40 1 5.2054 -2.8665 4.6800 41 1 2.9172 -1.1205 -1.0287 42 1 1.0871 0.6164 -2.5525 43 1 2.7589 1.0462 -2.1182 44 1 2.5058 1.0622 -4.8007 45 1 3.1328 1.8435 -7.9844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714282786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:45 Heat of formation + Delta-G solvation = 37.318358 kcal Electronic energy + Delta-G solvation = -28895.600585 eV Core-core repulsion = 24722.143186 eV Total energy + Delta-G solvation = -4173.457399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -42.46714 -39.58200 -38.37677 -37.58262 -36.87293 -34.09593 -33.68309 -33.27790 -31.34380 -31.17115 -30.85383 -29.24102 -26.73350 -26.04353 -24.26471 -24.01896 -23.25175 -22.58729 -20.61848 -20.38735 -19.31813 -18.25297 -17.87676 -17.32651 -16.74685 -16.27094 -16.16534 -16.05287 -15.82930 -15.43169 -15.23640 -15.01216 -14.55936 -14.39241 -13.96794 -13.85742 -13.67779 -13.39331 -12.77250 -12.64316 -12.55518 -12.50384 -12.43457 -12.20726 -11.88523 -11.71926 -11.64457 -11.40683 -11.18419 -11.07603 -10.84229 -10.80828 -10.39793 -10.22391 -9.94997 -9.83472 -9.51703 -9.14638 -8.47412 -8.12008 -8.01473 -7.97028 -6.42545 -3.83324 0.25853 0.62533 1.77925 1.90695 2.83703 3.13147 3.17682 3.26474 3.32280 3.44044 3.84975 3.89380 4.05921 4.17362 4.28728 4.30925 4.42446 4.65663 4.70105 4.83051 5.00229 5.02154 5.12657 5.19384 5.23791 5.25538 5.32387 5.57214 5.60995 5.70035 5.76999 5.79354 5.80634 5.95027 5.96821 6.00980 6.05346 6.21435 6.29906 6.41102 6.42569 7.09662 7.16896 7.43937 7.54659 7.59050 8.05415 8.22647 8.60186 9.17186 9.53232 10.04565 10.75100 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011355 B = 0.002324 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.229313 B =12043.344213 C =14065.817697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.122 3.878 5 N -0.729 5.729 6 C 0.604 3.396 7 O -0.554 6.554 8 C -0.314 4.314 9 C 0.123 3.877 10 N -0.315 5.315 11 N -0.267 5.267 12 C 0.111 3.889 13 C -0.160 4.160 14 C -0.076 4.076 15 C -0.106 4.106 16 C 0.163 3.837 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.397 0.603 36 H 0.199 0.801 37 H 0.173 0.827 38 H 0.158 0.842 39 H 0.146 0.854 40 H 0.161 0.839 41 H 0.348 0.652 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.288 -1.848 24.551 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.001 4.001 5 N -0.381 5.381 6 C 0.393 3.607 7 O -0.433 6.433 8 C -0.328 4.328 9 C -0.058 4.058 10 N -0.135 5.135 11 N -0.031 5.031 12 C -0.016 4.016 13 C -0.182 4.182 14 C -0.100 4.100 15 C -0.125 4.125 16 C 0.042 3.958 17 N -0.299 5.299 18 C -0.084 4.084 19 C 0.224 3.776 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.231 0.769 36 H 0.216 0.784 37 H 0.190 0.810 38 H 0.176 0.824 39 H 0.164 0.836 40 H 0.179 0.821 41 H 0.169 0.831 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.656 -2.917 24.412 25.750 hybrid contribution 0.407 0.951 -0.983 1.427 sum 8.063 -1.966 23.428 24.855 Atomic orbital electron populations 1.21732 0.93397 1.02967 1.01515 1.21821 0.97132 0.95940 0.89055 0.93320 1.21577 0.78999 1.02038 0.97528 1.45748 1.07996 1.60648 1.23674 1.16755 0.85030 0.77006 0.81925 1.90752 1.69796 1.49146 1.33606 1.19679 0.94090 1.19665 0.99396 1.24151 0.89396 0.94310 0.97910 1.77665 1.20806 1.19827 0.95200 1.46131 1.05604 1.36226 1.15107 1.21619 0.92332 0.96064 0.91572 1.20960 0.98931 1.02613 0.95669 1.21363 0.91735 0.96837 1.00025 1.20918 1.02058 0.97865 0.91688 1.19328 0.84506 0.97031 0.94910 1.60120 1.34869 1.32242 1.02715 1.21763 1.01512 0.93789 0.91301 1.19806 0.85064 0.88224 0.84467 1.90537 1.55244 1.16093 1.84719 1.41862 1.57702 1.12417 1.07990 1.19698 1.39879 0.96442 0.86819 0.87927 1.25259 0.97666 0.95775 0.99234 1.69608 1.48679 1.08841 1.27169 0.85863 0.78895 0.78957 0.80615 1.20384 1.20945 1.19421 0.91501 0.92489 0.92021 0.90273 0.90800 0.76859 0.78395 0.81013 0.82416 0.83630 0.82112 0.83119 0.89386 0.93844 0.77469 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.41 37.16 0.35 -1.14 16 2 C 0.07 0.83 2.81 -67.71 -0.19 0.64 16 3 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 4 C 0.12 1.42 5.31 -4.05 -0.02 1.40 16 5 N -0.73 -8.66 4.98 -61.65 -0.31 -8.96 16 6 C 0.60 8.31 7.78 -12.91 -0.10 8.21 16 7 O -0.55 -8.89 15.71 5.17 0.08 -8.81 16 8 C -0.31 -4.04 6.17 -104.68 -0.65 -4.69 16 9 C 0.12 1.46 11.44 -17.14 -0.20 1.27 16 10 N -0.31 -4.03 12.57 30.75 0.39 -3.64 16 11 N -0.27 -3.01 3.86 -10.55 -0.04 -3.05 16 12 C 0.11 0.81 11.17 -16.68 -0.19 0.62 16 13 C -0.16 -0.82 9.98 -39.94 -0.40 -1.22 16 14 C -0.08 -0.47 10.09 -39.50 -0.40 -0.87 16 15 C -0.11 -1.02 9.73 -39.53 -0.38 -1.40 16 16 C 0.16 1.97 6.76 -84.07 -0.57 1.40 16 17 N -0.66 -10.24 5.93 -107.99 -0.64 -10.88 16 18 C 0.05 0.82 5.97 -4.97 -0.03 0.79 16 19 C 0.44 10.13 7.82 -10.99 -0.09 10.05 16 20 O -0.58 -15.60 15.78 5.55 0.09 -15.52 16 21 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 22 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 23 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 26 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.40 4.20 6.29 -40.82 -0.26 3.95 16 36 H 0.20 1.81 7.46 -52.49 -0.39 1.41 16 37 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.16 0.25 8.06 -52.49 -0.42 -0.18 16 39 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.16 1.60 7.12 -52.49 -0.37 1.23 16 41 H 0.35 5.53 6.41 -39.29 -0.25 5.28 16 42 H 0.09 1.38 7.44 -51.93 -0.39 1.00 16 43 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 44 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -35.94 385.78 -7.73 -43.67 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -5.66 Total: 15.97 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -3.10 Total: 7.12 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: 0.07 Total: -64.25 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.17 Total: -24.33 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.94 -7.73 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714282786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.993 kcal (2) G-P(sol) polarization free energy of solvation -35.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds