Wall clock time and date at job start Wed Apr 1 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47171 * 2 1 4 4 C 1.52999 * 109.47177 * 120.00236 * 2 1 3 5 5 N 1.46493 * 109.47417 * 174.99765 * 4 2 1 6 6 C 1.34773 * 120.00198 * 179.97438 * 5 4 2 7 7 O 1.21723 * 120.00159 * 0.02562 * 6 5 4 8 8 C 1.46564 * 120.00303 * 179.97438 * 6 5 4 9 9 C 1.40561 * 126.57614 * 0.02562 * 8 6 5 10 10 N 1.30742 * 108.74250 * 180.02562 * 9 8 6 11 11 N 1.40026 * 109.60610 * 359.97438 * 10 9 8 12 12 C 1.36232 * 132.01104 * 180.02562 * 11 10 9 13 13 C 1.35195 * 120.70774 * 180.02562 * 12 11 10 14 14 C 1.40163 * 120.31342 * 359.97438 * 13 12 11 15 15 C 1.36452 * 119.40932 * 359.97438 * 14 13 12 16 16 C 1.36579 * 107.90482 * 0.02562 * 11 10 9 17 17 N 1.46902 * 109.46922 * 239.99851 * 2 1 3 18 18 C 1.46907 * 110.99710 * 85.00227 * 17 2 1 19 19 C 1.50702 * 109.47028 * 179.97438 * 18 17 2 20 20 O 1.21292 * 119.99858 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99644 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99456 * 179.97438 * 21 19 18 23 23 H 1.08004 * 120.00565 * 0.02562 * 22 21 19 24 24 C 1.38946 * 119.99917 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00199 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00252 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47114 * 89.99874 * 26 24 22 28 28 H 1.48498 * 109.47414 * 209.99696 * 26 24 22 29 29 H 1.48502 * 109.46993 * 330.00051 * 26 24 22 30 30 H 1.08996 * 109.47678 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46883 * 300.00162 * 1 2 3 32 32 H 1.09002 * 109.46830 * 59.99314 * 1 2 3 33 33 H 1.09006 * 109.47045 * 54.99517 * 4 2 1 34 34 H 1.09002 * 109.46868 * 294.99876 * 4 2 1 35 35 H 0.97001 * 120.00092 * 0.02562 * 5 4 2 36 36 H 1.07996 * 125.63174 * 0.03256 * 9 8 6 37 37 H 1.08003 * 119.65181 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.84287 * 179.69959 * 13 12 11 39 39 H 1.07992 * 120.29207 * 180.02562 * 14 13 12 40 40 H 1.07999 * 120.36993 * 179.97438 * 15 14 13 41 41 H 1.00897 * 110.99887 * 208.95315 * 17 2 1 42 42 H 1.08996 * 109.47275 * 299.99890 * 18 17 2 43 43 H 1.09003 * 109.46992 * 60.00164 * 18 17 2 44 44 H 0.96992 * 120.00676 * 0.02562 * 21 19 18 45 45 H 0.96997 * 120.00512 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1730 -1.4284 2.1911 7 8 3.5677 -1.8851 3.1433 8 6 5.6336 -1.5342 2.1322 9 6 6.4670 -1.0591 1.1049 10 7 7.7078 -1.3393 1.4070 11 7 7.7526 -2.0063 2.6374 12 6 8.7900 -2.4988 3.3703 13 6 8.5684 -3.1155 4.5528 14 6 7.2631 -3.2568 5.0434 15 6 6.2175 -2.7658 4.3170 16 6 6.4715 -2.1316 3.0940 17 7 2.0196 -0.6925 -1.1994 18 6 2.0824 0.2226 -2.3469 19 6 2.5884 -0.5215 -3.5558 20 8 2.8696 -1.6982 -3.4698 21 7 2.7295 0.1209 -4.7322 22 6 3.1904 -0.5559 -5.8317 23 1 3.4399 -1.6040 -5.7555 24 6 3.3353 0.1062 -7.0447 25 7 3.0313 1.3812 -7.1378 26 14 3.9626 -0.8162 -8.5432 27 1 2.8140 -1.3991 -9.2822 28 1 4.6971 0.1215 -9.4300 29 1 4.8751 -1.9041 -8.1086 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.6053 -1.7199 1.2951 34 1 1.7516 -0.1583 2.1369 35 1 3.9824 -0.4623 0.4319 36 1 6.1370 -0.5469 0.2132 37 1 9.8003 -2.3955 3.0028 38 1 9.4008 -3.5051 5.1201 39 1 7.0865 -3.7491 5.9882 40 1 5.2054 -2.8665 4.6800 41 1 2.9172 -1.1205 -1.0287 42 1 1.0871 0.6164 -2.5525 43 1 2.7589 1.0462 -2.1182 44 1 2.5058 1.0622 -4.8007 45 1 3.1328 1.8435 -7.9844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714282786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:44 Heat of formation + Delta-G solvation = 9.488785 kcal Electronic energy + Delta-G solvation = -28896.807366 eV Core-core repulsion = 24722.143186 eV Total energy + Delta-G solvation = -4174.664180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.22531 -40.64034 -40.07111 -38.29873 -38.07892 -35.96785 -34.90860 -34.00422 -33.26711 -32.11333 -31.85205 -30.02898 -28.13290 -27.21038 -25.70050 -24.90560 -24.09538 -23.39311 -21.63156 -21.32712 -21.07686 -19.91844 -19.09461 -18.13804 -17.75706 -17.32351 -17.05185 -16.93112 -16.78744 -16.73190 -16.44119 -16.30138 -15.80325 -15.74461 -15.37390 -15.21682 -14.79318 -14.35569 -14.26079 -13.69744 -13.55403 -13.47191 -13.26245 -13.20509 -13.06964 -12.92479 -12.90777 -12.77112 -12.54529 -12.40337 -12.12215 -11.99372 -11.84256 -11.57345 -11.50045 -10.99500 -10.53981 -10.33002 -10.15268 -10.00334 -9.35230 -8.78134 -8.46072 -5.94299 -0.39650 -0.04049 1.00545 1.09134 1.37869 1.41861 1.54174 2.06417 2.14033 2.20831 2.29460 2.54103 2.89038 3.13837 3.21579 3.48778 3.50848 3.72866 3.79448 3.83705 4.01296 4.09940 4.19504 4.28314 4.32853 4.41832 4.47839 4.48231 4.62031 4.65921 4.68846 4.86963 4.96165 5.04784 5.07765 5.17383 5.20875 5.34942 5.40090 5.41885 5.49862 5.73572 5.89869 6.10840 6.28601 6.36466 6.49229 6.61335 7.13898 7.22763 7.57824 8.13416 8.71180 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011355 B = 0.002324 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.229313 B =12043.344213 C =14065.817697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.078 3.922 3 H 0.070 0.930 4 C 0.127 3.873 5 N -0.723 5.723 6 C 0.602 3.398 7 O -0.586 6.586 8 C -0.351 4.351 9 C 0.122 3.878 10 N -0.347 5.347 11 N -0.272 5.272 12 C 0.091 3.909 13 C -0.139 4.139 14 C -0.048 4.048 15 C -0.141 4.141 16 C 0.149 3.851 17 N -0.681 5.681 18 C 0.064 3.936 19 C 0.437 3.563 20 O -0.624 6.624 21 N -0.572 5.572 22 C -0.332 4.332 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.403 0.597 36 H 0.214 0.786 37 H 0.199 0.801 38 H 0.207 0.793 39 H 0.184 0.816 40 H 0.149 0.851 41 H 0.342 0.658 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.397 0.603 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.620 -1.635 26.124 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.088 0.912 4 C 0.004 3.996 5 N -0.374 5.374 6 C 0.392 3.608 7 O -0.469 6.469 8 C -0.366 4.366 9 C -0.058 4.058 10 N -0.168 5.168 11 N -0.035 5.035 12 C -0.035 4.035 13 C -0.160 4.160 14 C -0.071 4.071 15 C -0.161 4.161 16 C 0.027 3.973 17 N -0.316 5.316 18 C -0.068 4.068 19 C 0.225 3.775 20 O -0.510 6.510 21 N -0.210 5.210 22 C -0.461 4.461 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.239 0.761 36 H 0.231 0.769 37 H 0.216 0.784 38 H 0.224 0.776 39 H 0.202 0.798 40 H 0.167 0.833 41 H 0.163 0.837 42 H 0.124 0.876 43 H 0.091 0.909 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.977 -2.659 25.974 27.610 hybrid contribution 0.107 0.778 -1.266 1.490 sum 9.084 -1.881 24.708 26.392 Atomic orbital electron populations 1.21744 0.92516 1.02531 1.02675 1.21873 0.97630 0.96444 0.87193 0.91243 1.21541 0.78748 1.01293 0.98057 1.45695 1.08123 1.60165 1.23441 1.16954 0.85546 0.76590 0.81707 1.90712 1.70477 1.50793 1.34876 1.19702 0.93765 1.22236 1.00850 1.24388 0.89194 0.94016 0.98189 1.77541 1.21198 1.21412 0.96632 1.46357 1.06218 1.36102 1.14838 1.22476 0.92774 0.96059 0.92204 1.21599 0.99797 1.00091 0.94509 1.21914 0.91174 0.93727 1.00261 1.20986 1.02840 1.00245 0.91995 1.19654 0.84886 0.97145 0.95611 1.60128 1.34796 1.32913 1.03785 1.21628 1.02655 0.93670 0.88868 1.20908 0.83189 0.87973 0.85476 1.90509 1.56610 1.18287 1.85599 1.41917 1.58261 1.12582 1.08196 1.19631 1.41990 0.95886 0.88637 0.90488 1.25998 0.97322 0.96614 1.01282 1.69662 1.48671 1.09590 1.28085 0.84967 0.78408 0.77856 0.77353 1.19762 1.19498 1.19875 0.92780 0.89947 0.92205 0.92033 0.89578 0.76149 0.76932 0.78446 0.77608 0.79828 0.83350 0.83731 0.87631 0.90869 0.76907 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.41 71.98 0.68 -2.07 16 2 C 0.08 1.72 2.81 44.91 0.13 1.85 16 3 H 0.07 1.31 7.80 -2.39 -0.02 1.29 16 4 C 0.13 2.94 5.31 86.38 0.46 3.40 16 5 N -0.72 -17.68 4.98 -467.18 -2.33 -20.01 16 6 C 0.60 17.50 7.78 86.41 0.67 18.17 16 7 O -0.59 -19.91 15.71 -4.42 -0.07 -19.98 16 8 C -0.35 -9.61 6.17 -19.90 -0.12 -9.74 16 9 C 0.12 3.08 11.44 85.42 0.98 4.06 16 10 N -0.35 -9.17 12.57 -56.62 -0.71 -9.88 16 11 N -0.27 -6.09 3.86 -187.28 -0.72 -6.81 16 12 C 0.09 1.13 11.17 83.31 0.93 2.06 16 13 C -0.14 -0.87 9.98 22.04 0.22 -0.65 16 14 C -0.05 -0.44 10.09 22.32 0.23 -0.22 16 15 C -0.14 -2.69 9.73 22.30 0.22 -2.47 16 16 C 0.15 3.69 6.76 39.49 0.27 3.96 16 17 N -0.68 -20.69 5.93 -495.56 -2.94 -23.62 16 18 C 0.06 2.08 5.97 85.56 0.51 2.59 16 19 C 0.44 20.42 7.82 87.66 0.69 21.11 16 20 O -0.62 -34.46 15.78 -3.07 -0.05 -34.51 16 21 N -0.57 -28.96 5.29 -306.98 -1.62 -30.59 16 22 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 23 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.33 13.05 21.66 0.28 -49.04 16 26 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 29 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.24 7.45 -2.39 -0.02 1.22 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.40 8.75 6.29 -92.71 -0.58 8.17 16 36 H 0.21 4.17 7.46 -2.91 -0.02 4.15 16 37 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.21 -0.65 8.06 -2.91 -0.02 -0.68 16 39 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 40 H 0.15 3.14 7.12 -2.91 -0.02 3.12 16 41 H 0.34 11.02 6.41 -89.70 -0.58 10.44 16 42 H 0.11 3.11 7.44 -2.39 -0.02 3.10 16 43 H 0.07 1.98 8.06 -2.39 -0.02 1.96 16 44 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 45 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -81.96 385.78 0.17 -81.79 By element: Atomic # 1 Polarization: 44.49 SS G_CDS: -0.83 Total: 43.66 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 7.13 Total: 23.86 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -8.04 Total: -139.96 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -0.12 Total: -54.49 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -81.96 0.17 -81.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714282786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.276 kcal (2) G-P(sol) polarization free energy of solvation -81.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds