Wall clock time and date at job start Wed Apr 1 2020 05:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46911 * 2 1 4 4 C 1.52993 * 109.47378 * 120.00301 * 2 1 3 5 5 N 1.46497 * 109.47381 * 175.00217 * 4 2 1 6 6 C 1.34777 * 120.00028 * 180.02562 * 5 4 2 7 7 O 1.21586 * 119.99911 * 359.97438 * 6 5 4 8 8 C 1.47578 * 119.99779 * 179.97438 * 6 5 4 9 9 C 1.41754 * 120.01212 * 359.97438 * 8 6 5 10 10 C 1.35635 * 119.53899 * 180.02562 * 9 8 6 11 11 C 1.41176 * 119.50272 * 0.02562 * 10 9 8 12 12 N 1.32424 * 132.11152 * 179.97438 * 11 10 9 13 13 C 1.33586 * 109.22203 * 180.02562 * 12 11 10 14 14 C 1.35003 * 108.66237 * 0.04533 * 13 12 11 15 15 N 1.37007 * 107.14023 * 359.95161 * 14 13 12 16 16 C 1.35924 * 132.41772 * 180.02562 * 15 14 13 17 17 N 1.46905 * 109.47058 * 240.00512 * 2 1 3 18 18 C 1.46905 * 110.99765 * 84.99634 * 17 2 1 19 19 C 1.50704 * 109.46424 * 179.97438 * 18 17 2 20 20 O 1.21284 * 120.00447 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99614 * 180.02562 * 19 18 17 22 22 C 1.37085 * 119.99862 * 180.02562 * 21 19 18 23 23 H 1.08005 * 120.00312 * 359.97438 * 22 21 19 24 24 C 1.38957 * 120.00237 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99410 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00443 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47375 * 59.99269 * 26 24 22 28 28 H 1.48494 * 109.47088 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.46830 * 299.99604 * 26 24 22 30 30 H 1.08996 * 109.46987 * 299.99748 * 1 2 3 31 31 H 1.09005 * 109.47144 * 59.99379 * 1 2 3 32 32 H 1.08995 * 109.46982 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47006 * 54.99613 * 4 2 1 34 34 H 1.09000 * 109.47378 * 295.00336 * 4 2 1 35 35 H 0.97001 * 119.99713 * 359.97438 * 5 4 2 36 36 H 1.08006 * 120.23278 * 0.02562 * 9 8 6 37 37 H 1.08000 * 120.24175 * 179.72301 * 10 9 8 38 38 H 1.07997 * 125.66795 * 180.02562 * 13 12 11 39 39 H 1.08000 * 126.42582 * 180.02562 * 14 13 12 40 40 H 1.07997 * 119.75582 * 359.97438 * 16 15 14 41 41 H 1.00896 * 110.99784 * 208.95389 * 17 2 1 42 42 H 1.08998 * 109.47251 * 299.99670 * 18 17 2 43 43 H 1.08998 * 109.46771 * 60.00143 * 18 17 2 44 44 H 0.97002 * 119.99844 * 359.97438 * 21 19 18 45 45 H 0.97000 * 119.99926 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8263 1.1905 6 6 4.1731 -1.4292 2.1906 7 8 3.5684 -1.8854 3.1417 8 6 5.6438 -1.5355 2.1312 9 6 6.3489 -1.0042 1.0221 10 6 7.7005 -1.1077 0.9771 11 6 8.3847 -1.7437 2.0356 12 7 9.6705 -1.9798 2.2470 13 6 9.8144 -2.6215 3.4098 14 6 8.5938 -2.8025 3.9573 15 7 7.6800 -2.2512 3.0981 16 6 6.3255 -2.1473 3.1433 17 7 2.0197 -0.6924 -1.1995 18 6 2.0824 0.2228 -2.3469 19 6 2.5885 -0.5213 -3.5558 20 8 2.8688 -1.6982 -3.4701 21 7 2.7295 0.1211 -4.7322 22 6 3.1893 -0.5558 -5.8320 23 1 3.4390 -1.6038 -5.7557 24 6 3.3353 0.1066 -7.0448 25 7 3.0320 1.3818 -7.1375 26 14 3.9626 -0.8156 -8.5433 27 1 3.0410 -1.9374 -8.8558 28 1 4.0265 0.1096 -9.7029 29 1 5.3184 -1.3525 -8.2623 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 1.2950 34 1 1.7517 -0.1585 2.1369 35 1 3.9824 -0.4627 0.4315 36 1 5.8135 -0.5203 0.2185 37 1 8.2487 -0.7108 0.1355 38 1 10.7515 -2.9423 3.8402 39 1 8.3782 -3.2893 4.8970 40 1 5.7847 -2.5521 3.9858 41 1 2.9173 -1.1204 -1.0289 42 1 1.0870 0.6165 -2.5525 43 1 2.7588 1.0464 -2.1182 44 1 2.5049 1.0623 -4.8008 45 1 3.1335 1.8442 -7.9841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714290798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:49 Heat of formation + Delta-G solvation = 27.351667 kcal Electronic energy + Delta-G solvation = -28877.888422 eV Core-core repulsion = 24703.998834 eV Total energy + Delta-G solvation = -4173.889588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.19683 -40.31074 -38.54552 -37.48255 -36.92738 -34.50000 -34.03102 -33.71131 -31.49067 -31.17033 -30.58946 -29.14177 -27.02561 -26.32495 -24.37745 -23.86460 -23.51698 -22.13220 -21.06222 -20.74361 -19.40701 -18.63565 -18.03195 -17.78309 -16.93678 -16.40692 -16.28216 -16.25698 -15.78978 -15.39130 -15.12399 -14.93885 -14.78054 -14.51022 -14.27574 -14.00336 -13.94067 -13.50465 -13.46817 -12.90266 -12.79576 -12.60141 -12.16824 -12.06550 -11.96631 -11.82593 -11.72074 -11.47852 -11.45282 -11.10503 -10.94347 -10.50832 -10.47464 -10.41872 -10.25668 -9.54905 -9.48810 -9.21820 -8.54995 -8.28707 -8.21286 -8.01761 -6.46481 -3.87487 0.14418 0.67721 2.02150 2.16710 2.75332 2.83632 3.17179 3.23633 3.26509 3.27792 3.80648 3.83512 3.96532 4.10796 4.17116 4.23445 4.32224 4.47794 4.54678 4.89180 4.92042 4.94722 5.05801 5.10056 5.18696 5.21317 5.40327 5.42373 5.51902 5.60492 5.63777 5.66997 5.70054 5.88283 5.90355 5.96145 6.02876 6.16996 6.20822 6.27625 6.55959 7.04282 7.07140 7.46043 7.46952 7.50708 7.78453 8.00588 8.55389 9.12819 9.48304 9.99318 10.70976 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009371 B = 0.002492 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.222486 B =11232.823405 C =13797.990965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.070 3.930 3 H 0.050 0.950 4 C 0.118 3.882 5 N -0.720 5.720 6 C 0.576 3.424 7 O -0.537 6.537 8 C -0.160 4.160 9 C -0.081 4.081 10 C -0.076 4.076 11 C 0.233 3.767 12 N -0.490 5.490 13 C 0.035 3.965 14 C -0.096 4.096 15 N -0.368 5.368 16 C 0.134 3.866 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.438 3.562 20 O -0.583 6.583 21 N -0.561 5.561 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.024 3.976 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.401 0.599 36 H 0.146 0.854 37 H 0.160 0.840 38 H 0.184 0.816 39 H 0.187 0.813 40 H 0.179 0.821 41 H 0.346 0.654 42 H 0.089 0.911 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 -0.161 21.840 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.040 4.040 3 H 0.068 0.932 4 C -0.005 4.005 5 N -0.373 5.373 6 C 0.362 3.638 7 O -0.416 6.416 8 C -0.166 4.166 9 C -0.105 4.105 10 C -0.096 4.096 11 C -0.011 4.011 12 N -0.209 5.209 13 C -0.115 4.115 14 C -0.225 4.225 15 N -0.041 5.041 16 C 0.009 3.991 17 N -0.299 5.299 18 C -0.084 4.084 19 C 0.223 3.777 20 O -0.467 6.467 21 N -0.198 5.198 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.237 0.763 36 H 0.164 0.836 37 H 0.178 0.822 38 H 0.201 0.799 39 H 0.204 0.796 40 H 0.196 0.804 41 H 0.167 0.833 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.437 -1.213 21.775 22.256 hybrid contribution 0.523 0.668 -0.499 0.985 sum 4.960 -0.544 21.276 21.853 Atomic orbital electron populations 1.21737 0.93191 1.03065 1.01665 1.21832 0.97320 0.95958 0.88874 0.93178 1.21692 0.78358 1.02451 0.97993 1.45884 1.08499 1.59473 1.23447 1.17578 0.85805 0.77918 0.82500 1.90806 1.69584 1.47981 1.33195 1.19319 0.94283 1.06164 0.96850 1.21086 0.93812 0.98482 0.97130 1.20234 0.93425 0.99117 0.96803 1.21199 0.87842 1.01405 0.90665 1.70784 1.13216 1.19277 1.17625 1.22601 0.97513 0.99245 0.92159 1.22805 0.88441 1.11232 1.00053 1.42854 1.06043 1.37488 1.17676 1.21666 0.80896 0.96575 0.99994 1.60119 1.34749 1.32346 1.02720 1.21770 1.01603 0.93742 0.91262 1.19775 0.85242 0.88227 0.84467 1.90535 1.55387 1.16057 1.84714 1.41856 1.57544 1.12425 1.07961 1.19650 1.40138 0.96426 0.86826 0.87951 1.25264 0.97545 0.95768 0.99253 1.69598 1.48426 1.08838 1.27353 0.85921 0.79468 0.78867 0.80009 1.19861 1.20954 1.19853 0.92415 0.91874 0.91438 0.89885 0.90391 0.76278 0.83595 0.82205 0.79889 0.79641 0.80377 0.83261 0.89314 0.93805 0.77460 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.42 37.16 0.35 -1.00 16 2 C 0.07 0.73 2.81 -67.71 -0.19 0.54 16 3 H 0.05 0.47 7.80 -51.93 -0.40 0.07 16 4 C 0.12 1.18 5.31 -4.05 -0.02 1.15 16 5 N -0.72 -7.08 4.94 -61.34 -0.30 -7.39 16 6 C 0.58 6.41 7.76 -12.45 -0.10 6.31 16 7 O -0.54 -7.39 16.27 5.29 0.09 -7.30 16 8 C -0.16 -1.58 5.84 -105.37 -0.61 -2.19 16 9 C -0.08 -0.73 9.53 -39.17 -0.37 -1.11 16 10 C -0.08 -0.75 10.09 -39.40 -0.40 -1.15 16 11 C 0.23 2.72 7.81 -155.93 -1.22 1.50 16 12 N -0.49 -6.09 11.31 -12.72 -0.14 -6.23 16 13 C 0.03 0.32 11.82 -17.94 -0.21 0.11 16 14 C -0.10 -0.79 11.75 -16.39 -0.19 -0.98 16 15 N -0.37 -3.73 2.93 -62.31 -0.18 -3.91 16 16 C 0.13 1.27 10.49 -16.36 -0.17 1.10 16 17 N -0.66 -9.45 5.93 -107.99 -0.64 -10.09 16 18 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 19 C 0.44 9.73 7.82 -10.98 -0.09 9.65 16 20 O -0.58 -15.13 15.78 5.55 0.09 -15.04 16 21 N -0.56 -13.61 5.29 -10.96 -0.06 -13.67 16 22 C -0.30 -8.15 9.68 -14.94 -0.14 -8.30 16 23 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -23.89 13.05 55.50 0.72 -23.17 16 26 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 29 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 3.48 5.40 -40.82 -0.22 3.26 16 36 H 0.15 1.04 6.44 -52.48 -0.34 0.70 16 37 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.19 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.18 1.40 7.56 -52.49 -0.40 1.00 16 41 H 0.35 5.03 6.41 -39.29 -0.25 4.78 16 42 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 43 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 44 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -34.69 384.63 -8.75 -43.44 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -5.60 Total: 15.04 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -3.49 Total: 6.89 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -0.60 Total: -64.46 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.17 Total: -22.34 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.69 -8.75 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714290798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.788 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds