Wall clock time and date at job start Wed Apr 1 2020 05:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46911 * 2 1 4 4 C 1.52993 * 109.47378 * 120.00301 * 2 1 3 5 5 N 1.46497 * 109.47381 * 175.00217 * 4 2 1 6 6 C 1.34777 * 120.00028 * 180.02562 * 5 4 2 7 7 O 1.21586 * 119.99911 * 359.97438 * 6 5 4 8 8 C 1.47578 * 119.99779 * 179.97438 * 6 5 4 9 9 C 1.41754 * 120.01212 * 359.97438 * 8 6 5 10 10 C 1.35635 * 119.53899 * 180.02562 * 9 8 6 11 11 C 1.41176 * 119.50272 * 0.02562 * 10 9 8 12 12 N 1.32424 * 132.11152 * 179.97438 * 11 10 9 13 13 C 1.33586 * 109.22203 * 180.02562 * 12 11 10 14 14 C 1.35003 * 108.66237 * 0.04533 * 13 12 11 15 15 N 1.37007 * 107.14023 * 359.95161 * 14 13 12 16 16 C 1.35924 * 132.41772 * 180.02562 * 15 14 13 17 17 N 1.46905 * 109.47058 * 240.00512 * 2 1 3 18 18 C 1.46905 * 110.99765 * 84.99634 * 17 2 1 19 19 C 1.50704 * 109.46424 * 179.97438 * 18 17 2 20 20 O 1.21284 * 120.00447 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99614 * 180.02562 * 19 18 17 22 22 C 1.37085 * 119.99862 * 180.02562 * 21 19 18 23 23 H 1.08005 * 120.00312 * 359.97438 * 22 21 19 24 24 C 1.38957 * 120.00237 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99410 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00443 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47375 * 59.99269 * 26 24 22 28 28 H 1.48494 * 109.47088 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.46830 * 299.99604 * 26 24 22 30 30 H 1.08996 * 109.46987 * 299.99748 * 1 2 3 31 31 H 1.09005 * 109.47144 * 59.99379 * 1 2 3 32 32 H 1.08995 * 109.46982 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47006 * 54.99613 * 4 2 1 34 34 H 1.09000 * 109.47378 * 295.00336 * 4 2 1 35 35 H 0.97001 * 119.99713 * 359.97438 * 5 4 2 36 36 H 1.08006 * 120.23278 * 0.02562 * 9 8 6 37 37 H 1.08000 * 120.24175 * 179.72301 * 10 9 8 38 38 H 1.07997 * 125.66795 * 180.02562 * 13 12 11 39 39 H 1.08000 * 126.42582 * 180.02562 * 14 13 12 40 40 H 1.07997 * 119.75582 * 359.97438 * 16 15 14 41 41 H 1.00896 * 110.99784 * 208.95389 * 17 2 1 42 42 H 1.08998 * 109.47251 * 299.99670 * 18 17 2 43 43 H 1.08998 * 109.46771 * 60.00143 * 18 17 2 44 44 H 0.97002 * 119.99844 * 359.97438 * 21 19 18 45 45 H 0.97000 * 119.99926 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8263 1.1905 6 6 4.1731 -1.4292 2.1906 7 8 3.5684 -1.8854 3.1417 8 6 5.6438 -1.5355 2.1312 9 6 6.3489 -1.0042 1.0221 10 6 7.7005 -1.1077 0.9771 11 6 8.3847 -1.7437 2.0356 12 7 9.6705 -1.9798 2.2470 13 6 9.8144 -2.6215 3.4098 14 6 8.5938 -2.8025 3.9573 15 7 7.6800 -2.2512 3.0981 16 6 6.3255 -2.1473 3.1433 17 7 2.0197 -0.6924 -1.1995 18 6 2.0824 0.2228 -2.3469 19 6 2.5885 -0.5213 -3.5558 20 8 2.8688 -1.6982 -3.4701 21 7 2.7295 0.1211 -4.7322 22 6 3.1893 -0.5558 -5.8320 23 1 3.4390 -1.6038 -5.7557 24 6 3.3353 0.1066 -7.0448 25 7 3.0320 1.3818 -7.1375 26 14 3.9626 -0.8156 -8.5433 27 1 3.0410 -1.9374 -8.8558 28 1 4.0265 0.1096 -9.7029 29 1 5.3184 -1.3525 -8.2623 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 1.2950 34 1 1.7517 -0.1585 2.1369 35 1 3.9824 -0.4627 0.4315 36 1 5.8135 -0.5203 0.2185 37 1 8.2487 -0.7108 0.1355 38 1 10.7515 -2.9423 3.8402 39 1 8.3782 -3.2893 4.8970 40 1 5.7847 -2.5521 3.9858 41 1 2.9173 -1.1204 -1.0289 42 1 1.0870 0.6165 -2.5525 43 1 2.7588 1.0464 -2.1182 44 1 2.5049 1.0623 -4.8008 45 1 3.1335 1.8442 -7.9841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714290798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:48 Heat of formation + Delta-G solvation = 2.140774 kcal Electronic energy + Delta-G solvation = -28878.981648 eV Core-core repulsion = 24703.998834 eV Total energy + Delta-G solvation = -4174.982814 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.92184 -41.17541 -40.16055 -38.45064 -37.87610 -35.97269 -35.28898 -34.63059 -33.26020 -32.29802 -31.45049 -29.85290 -28.15540 -27.55663 -25.78150 -24.88926 -24.25352 -22.84817 -21.88821 -21.61512 -21.10056 -19.91775 -19.40921 -18.70232 -17.77455 -17.56610 -17.17373 -17.09978 -16.85507 -16.77504 -16.32838 -15.94142 -15.86682 -15.64974 -15.49598 -15.22834 -14.87437 -14.69174 -14.27473 -14.18937 -13.72912 -13.64331 -13.46462 -13.26820 -12.92842 -12.87242 -12.85229 -12.77471 -12.54716 -12.40719 -12.19961 -12.11971 -11.86390 -11.48180 -11.32975 -11.27019 -10.33425 -10.30863 -9.99299 -9.96031 -9.35040 -9.00341 -8.45105 -5.93081 -0.59975 -0.05502 1.30866 1.40575 1.41827 1.43203 1.53186 1.98286 2.04700 2.08419 2.30037 2.48629 2.88576 3.12325 3.22945 3.39893 3.44571 3.51550 3.61381 3.70353 3.83473 4.19175 4.22158 4.29360 4.36596 4.41744 4.43806 4.48547 4.63312 4.65097 4.73823 4.80201 4.86072 4.94041 4.96616 5.08115 5.19230 5.28822 5.42823 5.47513 5.55215 5.84967 5.89917 6.10775 6.25809 6.37575 6.62388 6.73310 6.95165 7.15086 7.59326 8.14653 8.71850 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009371 B = 0.002492 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.222486 B =11232.823405 C =13797.990965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.072 0.928 4 C 0.123 3.877 5 N -0.714 5.714 6 C 0.578 3.422 7 O -0.567 6.567 8 C -0.169 4.169 9 C -0.076 4.076 10 C -0.090 4.090 11 C 0.206 3.794 12 N -0.526 5.526 13 C 0.019 3.981 14 C -0.088 4.088 15 N -0.374 5.374 16 C 0.138 3.862 17 N -0.681 5.681 18 C 0.064 3.936 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.572 5.572 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.988 3.012 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.407 0.593 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.212 0.788 39 H 0.224 0.776 40 H 0.194 0.806 41 H 0.343 0.657 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.397 0.603 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.397 0.548 22.895 23.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 H 0.090 0.910 4 C -0.001 4.001 5 N -0.366 5.366 6 C 0.365 3.635 7 O -0.447 6.447 8 C -0.175 4.175 9 C -0.100 4.100 10 C -0.110 4.110 11 C -0.037 4.037 12 N -0.247 5.247 13 C -0.130 4.130 14 C -0.216 4.216 15 N -0.046 5.046 16 C 0.012 3.988 17 N -0.317 5.317 18 C -0.068 4.068 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.210 5.210 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.812 3.188 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.245 0.755 36 H 0.181 0.819 37 H 0.185 0.815 38 H 0.228 0.772 39 H 0.240 0.760 40 H 0.211 0.789 41 H 0.163 0.837 42 H 0.123 0.877 43 H 0.093 0.907 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.209 -0.470 22.833 23.222 hybrid contribution 0.590 0.402 -0.722 1.015 sum 4.799 -0.068 22.111 22.626 Atomic orbital electron populations 1.21753 0.92606 1.02565 1.02689 1.21888 0.97620 0.96600 0.87161 0.91022 1.21662 0.78211 1.01839 0.98360 1.45847 1.08578 1.58901 1.23284 1.17694 0.86153 0.77440 0.82209 1.90788 1.70197 1.49392 1.34351 1.19294 0.93709 1.06991 0.97512 1.21232 0.93520 0.97991 0.97238 1.20410 0.93867 0.99653 0.97042 1.21484 0.88124 1.02428 0.91709 1.70741 1.13954 1.20618 1.19380 1.23195 0.99252 0.99035 0.91511 1.23496 0.87713 1.09811 1.00591 1.43024 1.06330 1.37545 1.17726 1.21913 0.80749 0.95900 1.00226 1.60108 1.34802 1.33005 1.03767 1.21628 1.02676 0.93691 0.88848 1.20915 0.83193 0.87981 0.85469 1.90507 1.56636 1.18221 1.85603 1.41920 1.58245 1.12599 1.08204 1.19592 1.42048 0.95889 0.88640 0.90412 1.25970 0.97310 0.96574 1.01247 1.69652 1.48617 1.09575 1.28154 0.85055 0.78753 0.77855 0.77109 1.19940 1.19602 1.19676 0.89892 0.92343 0.92746 0.91406 0.88883 0.75530 0.81937 0.81457 0.77180 0.75985 0.78879 0.83664 0.87736 0.90686 0.76920 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.42 71.98 0.68 -1.69 16 2 C 0.08 1.40 2.81 44.91 0.13 1.52 16 3 H 0.07 1.07 7.80 -2.39 -0.02 1.05 16 4 C 0.12 2.21 5.31 86.38 0.46 2.66 16 5 N -0.71 -12.96 4.94 -466.24 -2.30 -15.27 16 6 C 0.58 12.28 7.76 86.71 0.67 12.95 16 7 O -0.57 -15.09 16.27 -3.99 -0.06 -15.15 16 8 C -0.17 -3.20 5.84 -20.35 -0.12 -3.32 16 9 C -0.08 -1.33 9.53 22.54 0.21 -1.12 16 10 C -0.09 -1.80 10.09 22.39 0.23 -1.57 16 11 C 0.21 4.82 7.81 134.16 1.05 5.87 16 12 N -0.53 -13.13 11.31 -194.16 -2.20 -15.33 16 13 C 0.02 0.33 11.82 83.68 0.99 1.32 16 14 C -0.09 -1.29 11.75 83.14 0.98 -0.32 16 15 N -0.37 -7.24 2.93 -351.04 -1.03 -8.27 16 16 C 0.14 2.47 10.49 83.65 0.88 3.34 16 17 N -0.68 -18.28 5.93 -495.56 -2.94 -21.21 16 18 C 0.06 1.89 5.97 85.56 0.51 2.40 16 19 C 0.44 19.36 7.82 87.66 0.69 20.04 16 20 O -0.62 -32.83 15.78 -3.04 -0.05 -32.88 16 21 N -0.57 -27.89 5.29 -306.98 -1.62 -29.51 16 22 C -0.33 -18.29 9.68 84.04 0.81 -17.48 16 23 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 24 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 25 N -0.92 -48.31 13.05 21.66 0.28 -48.03 16 26 Si 0.99 42.18 29.55 68.60 2.03 44.21 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.07 7.45 -2.38 -0.02 1.05 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.41 6.37 5.40 -92.71 -0.50 5.87 16 36 H 0.16 2.15 6.44 -2.91 -0.02 2.13 16 37 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.21 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.22 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.19 2.77 7.56 -2.91 -0.02 2.74 16 41 H 0.34 9.56 6.41 -89.70 -0.58 8.98 16 42 H 0.10 2.83 7.44 -2.39 -0.02 2.82 16 43 H 0.08 1.80 8.05 -2.39 -0.02 1.78 16 44 H 0.40 18.26 7.90 -92.71 -0.73 17.53 16 45 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -76.18 384.63 -0.01 -76.18 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -0.74 Total: 40.74 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 8.63 Total: 24.50 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -9.81 Total: -137.61 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -0.11 Total: -48.03 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -76.18 -0.01 -76.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714290798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.325 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds