Wall clock time and date at job start Wed Apr 1 2020 04:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47020 * 2 1 4 4 C 1.53005 * 109.46907 * 240.00225 * 2 1 3 5 5 N 1.46894 * 109.46843 * 184.99919 * 4 2 1 6 6 C 1.46901 * 110.99791 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47466 * 180.02562 * 6 5 4 8 8 O 1.21297 * 119.99476 * 359.97438 * 7 6 5 9 9 N 1.34764 * 120.00281 * 179.97438 * 7 6 5 10 10 C 1.37100 * 119.99986 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00480 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99699 * 179.97438 * 10 9 7 13 13 N 1.31409 * 120.00449 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99678 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47333 * 89.99693 * 14 12 10 16 16 H 1.48501 * 109.47178 * 210.00401 * 14 12 10 17 17 H 1.48506 * 109.47014 * 329.99845 * 14 12 10 18 18 N 1.46498 * 109.47256 * 119.99831 * 2 1 3 19 19 C 1.34772 * 120.00449 * 274.99595 * 18 2 1 20 20 O 1.21530 * 119.99528 * 0.02562 * 19 18 2 21 21 C 1.48051 * 120.00423 * 179.97438 * 19 18 2 22 22 C 1.39768 * 119.47381 * 180.02562 * 21 19 18 23 23 C 1.38139 * 119.57685 * 180.02562 * 22 21 19 24 24 C 1.39251 * 118.37943 * 359.97438 * 23 22 21 25 25 N 1.37354 * 133.62019 * 180.02562 * 24 23 22 26 26 H 0.97003 * 125.04870 * 359.95796 * 25 24 23 27 27 C 1.36718 * 109.89746 * 179.97438 * 25 24 23 28 28 C 1.34290 * 110.02342 * 359.73144 * 27 25 24 29 29 C 1.41195 * 119.09792 * 359.97438 * 24 23 22 30 30 N 1.32448 * 119.47226 * 0.02562 * 21 19 18 31 31 H 1.09002 * 109.47465 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46999 * 299.99669 * 1 2 3 33 33 H 1.08993 * 109.47825 * 60.00041 * 1 2 3 34 34 H 1.08999 * 109.46917 * 304.99840 * 4 2 1 35 35 H 1.08990 * 109.47091 * 64.99597 * 4 2 1 36 36 H 1.00904 * 111.00455 * 56.04923 * 5 4 2 37 37 H 1.09000 * 109.47144 * 299.99505 * 6 5 4 38 38 H 1.08997 * 109.47392 * 59.99842 * 6 5 4 39 39 H 0.97002 * 120.00710 * 359.97438 * 9 7 6 40 40 H 0.96997 * 119.99637 * 179.97438 * 13 12 10 41 41 H 0.97007 * 119.99653 * 94.99999 * 18 2 1 42 42 H 1.07999 * 120.21100 * 0.02562 * 22 21 19 43 43 H 1.07994 * 120.80754 * 180.02562 * 23 22 21 44 44 H 1.08000 * 124.98391 * 179.97438 * 27 25 24 45 45 H 1.08000 * 126.48136 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5039 -0.8266 -1.1905 6 6 4.0301 -1.5158 -2.3763 7 6 5.5315 -1.6054 -2.2804 8 8 6.1065 -1.1404 -1.3190 9 7 6.2350 -2.2022 -3.2627 10 6 7.6009 -2.2832 -3.1757 11 1 8.1130 -1.8692 -2.3197 12 6 8.3262 -2.8990 -4.1884 13 7 7.7032 -3.4033 -5.2297 14 14 10.1872 -3.0100 -4.0694 15 1 10.5647 -4.2668 -3.3743 16 1 10.7717 -3.0045 -5.4345 17 1 10.7046 -1.8468 -3.3048 18 7 2.0183 -0.6906 1.1962 19 6 2.1472 -0.0183 2.3571 20 8 1.8578 1.1608 2.4117 21 6 2.6402 -0.7163 3.5661 22 6 2.7690 -0.0085 4.7644 23 6 3.2293 -0.6575 5.8936 24 6 3.5512 -2.0087 5.7954 25 7 4.0222 -2.9381 6.6904 26 1 4.2197 -2.7624 7.6237 27 6 4.1716 -4.1473 6.0702 28 6 3.8060 -4.0515 4.7816 29 6 3.3962 -2.6631 4.5538 30 7 2.9521 -2.0015 3.4948 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.6053 -1.7198 -1.2952 35 1 1.7515 -0.1583 -2.1369 36 1 3.7995 -1.2884 -0.3434 37 1 3.6094 -2.5199 -2.4295 38 1 3.7555 -0.9588 -3.2720 39 1 5.7752 -2.5744 -4.0314 40 1 8.2096 -3.8328 -5.9367 41 1 2.2490 -1.6318 1.1526 42 1 2.5104 1.0392 4.8072 43 1 3.3361 -0.1300 6.8298 44 1 4.5273 -5.0484 6.5477 45 1 3.8179 -4.8458 4.0500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715940663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:29 Heat of formation + Delta-G solvation = -28.351226 kcal Electronic energy + Delta-G solvation = -28905.830247 eV Core-core repulsion = 24729.525201 eV Total energy + Delta-G solvation = -4176.305046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 11.19 seconds Orbital eigenvalues (eV) -42.58434 -40.98688 -40.14161 -38.68710 -37.75587 -36.04035 -35.12768 -33.92468 -33.26428 -32.36889 -30.81026 -30.41919 -28.97684 -26.72942 -25.80893 -24.64148 -23.93607 -22.51828 -21.70413 -21.47972 -21.08414 -19.92739 -19.35591 -18.93418 -17.89002 -17.75380 -17.19207 -16.90758 -16.41146 -16.36097 -16.02862 -15.84583 -15.70360 -15.57471 -15.28847 -15.08164 -14.55728 -14.33361 -14.08988 -14.01610 -13.88666 -13.67584 -13.61618 -13.49064 -13.21212 -13.08666 -13.02189 -12.79609 -12.67005 -12.42299 -12.12727 -11.94786 -11.51458 -11.43368 -11.35968 -10.50476 -10.37985 -10.14914 -10.01844 -9.49521 -9.33643 -9.12619 -8.47005 -5.95725 -0.27829 0.00543 1.37458 1.40947 1.54101 1.63781 1.76260 2.00205 2.05035 2.13187 2.29087 2.87794 2.90799 3.01404 3.20128 3.49233 3.61483 3.74061 3.87579 3.98744 4.00335 4.20396 4.27227 4.36677 4.44217 4.50437 4.53625 4.58539 4.66131 4.68439 4.74282 4.80205 4.93554 4.96226 5.08589 5.27951 5.34807 5.39977 5.40413 5.50741 5.83410 5.86849 6.09044 6.31807 6.38238 6.55340 6.60321 6.80196 7.12503 7.14992 7.55845 8.12115 8.70489 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008930 B = 0.002594 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.847577 B =10791.357643 C =13107.788228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 H 0.073 0.927 4 C 0.056 3.944 5 N -0.688 5.688 6 C 0.065 3.935 7 C 0.435 3.565 8 O -0.626 6.626 9 N -0.571 5.571 10 C -0.335 4.335 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.992 3.008 15 H -0.269 1.269 16 H -0.269 1.269 17 H -0.275 1.275 18 N -0.699 5.699 19 C 0.575 3.425 20 O -0.568 6.568 21 C 0.045 3.955 22 C -0.114 4.114 23 C -0.080 4.080 24 C 0.059 3.941 25 N -0.571 5.571 26 H 0.440 0.560 27 C 0.102 3.898 28 C -0.224 4.224 29 C 0.055 3.945 30 N -0.442 5.442 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.340 0.660 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.410 0.590 42 H 0.156 0.844 43 H 0.178 0.822 44 H 0.230 0.770 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.777 -2.848 22.486 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.091 0.909 4 C -0.073 4.073 5 N -0.321 5.321 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.513 6.513 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.094 0.906 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.816 3.184 15 H -0.194 1.194 16 H -0.193 1.193 17 H -0.200 1.200 18 N -0.349 5.349 19 C 0.361 3.639 20 O -0.447 6.447 21 C -0.102 4.102 22 C -0.136 4.136 23 C -0.108 4.108 24 C -0.053 4.053 25 N -0.176 5.176 26 H 0.281 0.719 27 C -0.027 4.027 28 C -0.249 4.249 29 C -0.081 4.081 30 N -0.154 5.154 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.159 0.841 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.246 0.754 42 H 0.173 0.827 43 H 0.196 0.804 44 H 0.246 0.754 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.491 -1.657 22.005 26.400 hybrid contribution 0.854 -0.943 0.566 1.393 sum -13.637 -2.601 22.571 26.499 Atomic orbital electron populations 1.22060 0.92706 1.03103 1.03046 1.21143 0.95127 0.97077 0.82869 0.90862 1.22385 0.86145 1.00540 0.98217 1.60031 1.10361 1.57510 1.04182 1.21567 0.90207 0.99139 0.95810 1.20944 0.90760 0.82201 0.83810 1.90506 1.72880 1.52832 1.35047 1.41904 1.06837 1.51523 1.20618 1.19646 0.83124 1.36931 1.06761 0.90641 1.26028 1.04909 0.95751 0.94456 1.69666 1.38302 1.38366 1.09688 0.84942 0.76813 0.78725 0.77935 1.19444 1.19343 1.20015 1.45878 1.65353 1.14593 1.09088 1.18027 0.76934 0.85635 0.83290 1.90722 1.52467 1.16101 1.85394 1.20893 1.04140 0.90401 0.94762 1.21849 0.98525 1.01910 0.91313 1.20774 0.99248 0.90425 1.00382 1.19384 1.01286 0.92861 0.91801 1.41692 1.56128 1.07425 1.12393 0.71870 1.22685 0.98145 0.89790 0.92033 1.21919 1.11436 0.93436 0.98102 1.20660 1.02500 0.96485 0.88499 1.66770 1.09057 1.07831 1.31697 0.91148 0.93285 0.89251 0.92573 0.87574 0.84116 0.91095 0.87235 0.76853 0.91231 0.75412 0.82670 0.80448 0.75397 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.48 71.98 0.68 -2.26 16 2 C 0.14 3.60 2.88 44.99 0.13 3.73 16 3 H 0.07 2.25 7.58 -2.39 -0.02 2.23 16 4 C 0.06 1.34 5.30 86.31 0.46 1.80 16 5 N -0.69 -23.41 6.12 -517.94 -3.17 -26.58 16 6 C 0.06 2.30 6.17 85.56 0.53 2.83 16 7 C 0.44 21.65 7.82 87.66 0.69 22.33 16 8 O -0.63 -36.80 15.78 -3.08 -0.05 -36.84 16 9 N -0.57 -30.17 5.29 -306.99 -1.62 -31.79 16 10 C -0.34 -19.58 9.68 84.04 0.81 -18.76 16 11 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 12 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 13 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 14 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 N -0.70 -19.72 4.34 -445.21 -1.93 -21.66 16 19 C 0.58 18.44 7.77 86.85 0.67 19.12 16 20 O -0.57 -20.59 15.96 -3.81 -0.06 -20.65 16 21 C 0.04 1.32 6.74 42.03 0.28 1.60 16 22 C -0.11 -2.70 9.60 22.62 0.22 -2.49 16 23 C -0.08 -1.39 10.18 22.49 0.23 -1.16 16 24 C 0.06 1.10 7.29 39.25 0.29 1.38 16 25 N -0.57 -5.57 6.05 -187.39 -1.13 -6.70 16 26 H 0.44 0.79 8.96 -92.71 -0.83 -0.04 16 27 C 0.10 0.96 11.81 83.03 0.98 1.94 16 28 C -0.22 -4.12 11.08 23.54 0.26 -3.86 16 29 C 0.06 1.39 7.52 41.93 0.32 1.70 16 30 N -0.44 -13.10 9.57 -174.26 -1.67 -14.77 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.34 12.71 7.28 -89.69 -0.65 12.05 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 40 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 41 H 0.41 11.17 7.47 -92.70 -0.69 10.47 16 42 H 0.16 3.43 7.61 -2.91 -0.02 3.41 16 43 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 44 H 0.23 -0.15 8.06 -2.91 -0.02 -0.17 16 45 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -84.36 389.27 -2.14 -86.50 By element: Atomic # 1 Polarization: 50.73 SS G_CDS: -1.83 Total: 48.90 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 7.01 Total: 27.75 kcal Atomic # 7 Polarization: -142.17 SS G_CDS: -9.24 Total: -151.41 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: -0.11 Total: -57.50 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -84.36 -2.14 -86.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715940663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.147 kcal (2) G-P(sol) polarization free energy of solvation -84.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.19 seconds