Wall clock time and date at job start Wed Apr 1 2020 04:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.52995 * 109.47295 * 239.99616 * 2 1 3 5 5 N 1.46898 * 109.47107 * 185.00131 * 4 2 1 6 6 C 1.46898 * 110.99995 * 180.02562 * 5 4 2 7 7 C 1.50707 * 109.47178 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99402 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99842 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99550 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00357 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99599 * 179.97438 * 10 9 7 13 13 N 1.31403 * 120.00318 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99633 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47496 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47137 * 119.99924 * 14 12 10 17 17 H 1.48504 * 109.47052 * 239.99757 * 14 12 10 18 18 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 19 19 C 1.34773 * 120.00431 * 275.00470 * 18 2 1 20 20 O 1.21603 * 119.99887 * 359.97438 * 19 18 2 21 21 C 1.47512 * 119.99977 * 179.72696 * 19 18 2 22 22 C 1.41043 * 119.39692 * 0.27120 * 21 19 18 23 23 C 1.35186 * 121.65787 * 180.02562 * 22 21 19 24 24 C 1.41382 * 119.92828 * 359.96916 * 23 22 21 25 25 N 1.31928 * 134.39307 * 179.97438 * 24 23 22 26 26 N 1.39915 * 109.06427 * 180.02562 * 25 24 23 27 27 H 0.96998 * 124.98845 * 180.02562 * 26 25 24 28 28 C 1.33817 * 110.02675 * 0.02562 * 26 25 24 29 29 C 1.38539 * 107.83450 * 0.02562 * 28 26 25 30 30 C 1.38224 * 119.39232 * 180.02562 * 21 19 18 31 31 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 33 33 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 34 34 H 1.08997 * 109.47185 * 305.00386 * 4 2 1 35 35 H 1.09007 * 109.46938 * 65.00437 * 4 2 1 36 36 H 1.00900 * 110.99902 * 303.95714 * 5 4 2 37 37 H 1.08996 * 109.47477 * 299.99786 * 6 5 4 38 38 H 1.09004 * 109.47245 * 60.00092 * 6 5 4 39 39 H 0.97002 * 120.00054 * 359.97438 * 9 7 6 40 40 H 0.97001 * 120.00353 * 180.02562 * 13 12 10 41 41 H 0.97000 * 119.99456 * 95.00032 * 18 2 1 42 42 H 1.07997 * 119.16767 * 0.02562 * 22 21 19 43 43 H 1.08000 * 120.03533 * 179.97438 * 23 22 21 44 44 H 1.07994 * 126.08466 * 180.02562 * 28 26 25 45 45 H 1.08004 * 120.32599 * 359.97207 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5041 -0.8267 -1.1902 6 6 4.0305 -1.5149 -2.3765 7 6 5.5318 -1.6045 -2.2804 8 8 6.1067 -1.1403 -1.3185 9 7 6.2357 -2.1996 -3.2637 10 6 7.6015 -2.2806 -3.1765 11 1 8.1134 -1.8680 -2.3197 12 6 8.3271 -2.8946 -4.1900 13 7 7.7042 -3.3980 -5.2318 14 14 10.1880 -3.0057 -4.0709 15 1 10.6422 -2.3683 -2.8089 16 1 10.6005 -4.4322 -4.0818 17 1 10.8008 -2.3043 -5.2275 18 7 2.0183 -0.6905 1.1963 19 6 2.1470 -0.0182 2.3572 20 8 1.8582 1.1618 2.4116 21 6 2.6329 -0.7150 3.5631 22 6 2.9647 -2.0836 3.4854 23 6 3.4137 -2.7671 4.5619 24 6 3.5609 -2.1086 5.8044 25 7 3.9613 -2.4816 7.0048 26 7 3.8992 -1.3830 7.8691 27 1 4.1422 -1.3995 8.8080 28 6 3.4552 -0.3062 7.2103 29 6 3.2167 -0.6802 5.8978 30 6 2.7595 -0.0134 4.7473 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8898 33 1 -0.3632 0.5138 -0.8901 34 1 1.6055 -1.7198 -1.2950 35 1 1.7518 -0.1583 -2.1369 36 1 3.9280 0.0825 -1.0822 37 1 3.6098 -2.5190 -2.4307 38 1 3.7560 -0.9572 -3.2719 39 1 5.7759 -2.5706 -4.0331 40 1 8.2108 -3.8270 -5.9392 41 1 2.2490 -1.6317 1.1527 42 1 2.8574 -2.5985 2.5422 43 1 3.6598 -3.8149 4.4729 44 1 3.3088 0.6791 7.6275 45 1 2.5056 1.0355 4.7896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715946392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:04 Heat of formation + Delta-G solvation = 22.976176 kcal Electronic energy + Delta-G solvation = -28686.939874 eV Core-core repulsion = 24512.860550 eV Total energy + Delta-G solvation = -4174.079323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.58318 -39.87210 -38.30283 -37.14955 -36.38157 -34.26842 -33.63242 -32.43331 -31.62470 -31.18618 -30.44654 -29.07578 -27.56626 -25.17383 -24.75630 -23.32763 -22.96658 -21.34140 -20.91801 -20.37935 -19.22545 -18.53051 -17.92835 -17.70627 -16.92580 -16.52475 -15.91199 -15.29642 -15.26544 -14.90417 -14.64844 -14.54456 -14.38662 -14.24292 -14.10492 -13.84338 -13.49265 -13.40594 -13.21159 -13.02511 -12.55280 -12.46348 -12.00067 -11.90373 -11.74980 -11.74029 -11.51543 -11.46233 -11.04683 -10.88911 -10.63695 -10.59598 -10.33181 -10.21277 -9.84820 -9.50706 -9.13265 -8.94967 -8.45943 -8.07887 -7.94791 -7.89378 -6.40775 -3.81336 0.24858 1.27718 2.07885 2.32499 2.96380 3.17374 3.23224 3.27985 3.35543 3.82839 3.92223 3.95408 4.08698 4.26334 4.31590 4.73972 4.80479 4.83675 4.90817 5.08206 5.10966 5.14966 5.24609 5.27541 5.32912 5.34454 5.48779 5.61461 5.62625 5.79719 5.86530 5.93928 5.97248 6.09443 6.15497 6.19367 6.26524 6.27146 6.50394 6.60456 6.67298 7.17297 7.24157 7.56669 7.61919 7.66360 8.07871 8.34823 8.62553 9.19441 9.55698 10.07233 10.77078 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.002359 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.392202 B =11868.888854 C =14148.907720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.087 0.913 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.581 6.581 9 N -0.565 5.565 10 C -0.297 4.297 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.703 5.703 19 C 0.566 3.434 20 O -0.554 6.554 21 C -0.171 4.171 22 C -0.046 4.046 23 C -0.110 4.110 24 C 0.121 3.879 25 N -0.309 5.309 26 N -0.424 5.424 27 H 0.445 0.555 28 C 0.101 3.899 29 C -0.221 4.221 30 C 0.033 3.967 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.351 0.649 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.405 0.595 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.193 0.807 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.925 4.182 19.097 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.083 4.083 5 N -0.299 5.299 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.465 6.465 9 N -0.202 5.202 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.354 5.354 19 C 0.355 3.645 20 O -0.434 6.434 21 C -0.175 4.175 22 C -0.069 4.069 23 C -0.131 4.131 24 C -0.034 4.034 25 N -0.137 5.137 26 N -0.123 5.123 27 H 0.289 0.711 28 C -0.058 4.058 29 C -0.231 4.231 30 C 0.012 3.988 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.171 0.829 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.080 0.920 41 H 0.241 0.759 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.210 0.790 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.207 3.633 20.699 25.940 hybrid contribution 0.601 0.491 -1.263 1.483 sum -14.606 4.123 19.436 24.659 Atomic orbital electron populations 1.22141 0.95005 1.02232 1.02585 1.20940 0.93559 0.97536 0.83919 0.89498 1.22322 0.89543 1.00711 0.95710 1.60068 1.03031 1.26964 1.39862 1.21681 0.95302 0.99864 0.91382 1.19817 0.88027 0.84555 0.85019 1.90540 1.71108 1.51709 1.33109 1.41873 1.07410 1.51090 1.19796 1.19749 0.81514 1.35006 1.06429 0.87893 1.25255 1.00666 0.96820 0.95258 1.69615 1.36582 1.38748 1.09440 0.85811 0.82295 0.77909 0.78407 1.19206 1.20746 1.20797 1.45725 1.66502 1.14421 1.08770 1.18074 0.77067 0.86243 0.83151 1.90743 1.51585 1.15624 1.85419 1.19485 1.09309 0.94543 0.94178 1.20714 0.95034 0.92871 0.98312 1.19752 1.04336 1.00227 0.88767 1.21082 0.96287 0.92917 0.93074 1.77681 1.29308 1.06166 1.00557 1.46344 1.46499 1.06816 1.12661 0.71094 1.22859 0.96974 0.93610 0.92317 1.19564 1.14219 0.95106 0.94164 1.20645 0.90096 0.99110 0.88975 0.92311 0.91842 0.91665 0.90445 0.93880 0.82921 0.89591 0.93858 0.77493 0.91953 0.75893 0.84971 0.84790 0.79046 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 2 C 0.15 1.63 2.81 -67.93 -0.19 1.43 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 4 C 0.05 0.52 5.24 -3.83 -0.02 0.50 16 5 N -0.67 -10.13 5.85 -115.06 -0.67 -10.81 16 6 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 7 C 0.44 10.26 7.82 -10.98 -0.09 10.17 16 8 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 9 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 10 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 11 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 14 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 18 N -0.70 -8.32 4.75 -54.85 -0.26 -8.58 16 19 C 0.57 7.73 7.71 -12.48 -0.10 7.64 16 20 O -0.55 -9.03 15.92 5.27 0.08 -8.95 16 21 C -0.17 -2.10 5.86 -105.06 -0.62 -2.72 16 22 C -0.05 -0.52 9.39 -39.61 -0.37 -0.89 16 23 C -0.11 -1.25 10.05 -39.47 -0.40 -1.65 16 24 C 0.12 1.46 7.49 -82.98 -0.62 0.84 16 25 N -0.31 -3.55 12.69 33.30 0.42 -3.13 16 26 N -0.42 -2.97 7.17 30.87 0.22 -2.75 16 27 H 0.44 1.30 8.96 -182.74 -1.64 -0.33 16 28 C 0.10 0.67 12.09 -16.58 -0.20 0.47 16 29 C -0.22 -2.30 6.32 -105.24 -0.66 -2.97 16 30 C 0.03 0.38 9.64 -38.69 -0.37 0.00 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.35 5.89 8.43 -39.29 -0.33 5.55 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.40 4.34 6.53 -40.82 -0.27 4.07 16 42 H 0.13 1.24 6.27 -52.49 -0.33 0.91 16 43 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.19 0.37 8.06 -52.49 -0.42 -0.05 16 45 H 0.14 1.43 7.58 -52.48 -0.40 1.04 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -36.72 388.45 -9.17 -45.89 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -6.99 Total: 15.51 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -3.56 Total: 4.55 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.38 Total: -63.35 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.17 Total: -24.58 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.72 -9.17 -45.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715946392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.864 kcal (2) G-P(sol) polarization free energy of solvation -36.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds