Wall clock time and date at job start Wed Apr 1 2020 04:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.52995 * 109.47295 * 239.99616 * 2 1 3 5 5 N 1.46898 * 109.47107 * 185.00131 * 4 2 1 6 6 C 1.46898 * 110.99995 * 180.02562 * 5 4 2 7 7 C 1.50707 * 109.47178 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99402 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99842 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99550 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00357 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99599 * 179.97438 * 10 9 7 13 13 N 1.31403 * 120.00318 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99633 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47496 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47137 * 119.99924 * 14 12 10 17 17 H 1.48504 * 109.47052 * 239.99757 * 14 12 10 18 18 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 19 19 C 1.34773 * 120.00431 * 275.00470 * 18 2 1 20 20 O 1.21603 * 119.99887 * 359.97438 * 19 18 2 21 21 C 1.47512 * 119.99977 * 179.72696 * 19 18 2 22 22 C 1.41043 * 119.39692 * 0.27120 * 21 19 18 23 23 C 1.35186 * 121.65787 * 180.02562 * 22 21 19 24 24 C 1.41382 * 119.92828 * 359.96916 * 23 22 21 25 25 N 1.31928 * 134.39307 * 179.97438 * 24 23 22 26 26 N 1.39915 * 109.06427 * 180.02562 * 25 24 23 27 27 H 0.96998 * 124.98845 * 180.02562 * 26 25 24 28 28 C 1.33817 * 110.02675 * 0.02562 * 26 25 24 29 29 C 1.38539 * 107.83450 * 0.02562 * 28 26 25 30 30 C 1.38224 * 119.39232 * 180.02562 * 21 19 18 31 31 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 33 33 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 34 34 H 1.08997 * 109.47185 * 305.00386 * 4 2 1 35 35 H 1.09007 * 109.46938 * 65.00437 * 4 2 1 36 36 H 1.00900 * 110.99902 * 303.95714 * 5 4 2 37 37 H 1.08996 * 109.47477 * 299.99786 * 6 5 4 38 38 H 1.09004 * 109.47245 * 60.00092 * 6 5 4 39 39 H 0.97002 * 120.00054 * 359.97438 * 9 7 6 40 40 H 0.97001 * 120.00353 * 180.02562 * 13 12 10 41 41 H 0.97000 * 119.99456 * 95.00032 * 18 2 1 42 42 H 1.07997 * 119.16767 * 0.02562 * 22 21 19 43 43 H 1.08000 * 120.03533 * 179.97438 * 23 22 21 44 44 H 1.07994 * 126.08466 * 180.02562 * 28 26 25 45 45 H 1.08004 * 120.32599 * 359.97207 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5041 -0.8267 -1.1902 6 6 4.0305 -1.5149 -2.3765 7 6 5.5318 -1.6045 -2.2804 8 8 6.1067 -1.1403 -1.3185 9 7 6.2357 -2.1996 -3.2637 10 6 7.6015 -2.2806 -3.1765 11 1 8.1134 -1.8680 -2.3197 12 6 8.3271 -2.8946 -4.1900 13 7 7.7042 -3.3980 -5.2318 14 14 10.1880 -3.0057 -4.0709 15 1 10.6422 -2.3683 -2.8089 16 1 10.6005 -4.4322 -4.0818 17 1 10.8008 -2.3043 -5.2275 18 7 2.0183 -0.6905 1.1963 19 6 2.1470 -0.0182 2.3572 20 8 1.8582 1.1618 2.4116 21 6 2.6329 -0.7150 3.5631 22 6 2.9647 -2.0836 3.4854 23 6 3.4137 -2.7671 4.5619 24 6 3.5609 -2.1086 5.8044 25 7 3.9613 -2.4816 7.0048 26 7 3.8992 -1.3830 7.8691 27 1 4.1422 -1.3995 8.8080 28 6 3.4552 -0.3062 7.2103 29 6 3.2167 -0.6802 5.8978 30 6 2.7595 -0.0134 4.7473 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8898 33 1 -0.3632 0.5138 -0.8901 34 1 1.6055 -1.7198 -1.2950 35 1 1.7518 -0.1583 -2.1369 36 1 3.9280 0.0825 -1.0822 37 1 3.6098 -2.5190 -2.4307 38 1 3.7560 -0.9572 -3.2719 39 1 5.7759 -2.5706 -4.0331 40 1 8.2108 -3.8270 -5.9392 41 1 2.2490 -1.6317 1.1527 42 1 2.8574 -2.5985 2.5422 43 1 3.6598 -3.8149 4.4729 44 1 3.3088 0.6791 7.6275 45 1 2.5056 1.0355 4.7896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715946392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:01 Heat of formation + Delta-G solvation = -6.588630 kcal Electronic energy + Delta-G solvation = -28688.221900 eV Core-core repulsion = 24512.860550 eV Total energy + Delta-G solvation = -4175.361349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -42.30823 -40.85599 -40.09588 -38.08122 -37.42632 -36.00892 -35.08187 -33.25159 -33.20793 -32.47329 -31.28806 -29.86844 -28.91586 -26.69522 -25.71435 -24.56426 -23.89932 -22.20934 -21.68015 -21.33623 -21.00551 -19.88766 -19.21925 -18.67099 -17.88229 -17.58218 -17.37423 -16.64939 -16.35839 -16.14214 -15.95721 -15.73412 -15.58602 -15.25436 -15.10920 -15.04108 -14.86597 -14.54451 -14.10177 -14.04044 -13.86868 -13.53951 -13.33161 -13.05919 -12.95001 -12.77913 -12.74760 -12.62073 -12.52639 -12.39019 -12.11721 -11.78279 -11.49859 -11.41171 -11.38522 -10.90425 -10.32550 -10.00800 -9.99261 -9.82210 -9.30222 -8.69115 -8.45654 -5.93713 -0.47929 0.40403 1.35920 1.36806 1.42068 1.56032 1.79549 2.01140 2.08599 2.29331 2.32612 2.93166 2.94839 3.22093 3.22568 3.56071 3.65608 3.86000 3.93392 4.10803 4.19981 4.24510 4.36533 4.39884 4.42280 4.48715 4.54920 4.56614 4.63637 4.70228 4.81188 4.85704 5.08174 5.10224 5.33290 5.34549 5.35830 5.42498 5.42747 5.63407 5.74757 5.90514 6.12492 6.20859 6.36000 6.51016 6.62495 6.69941 7.15028 7.35902 7.59271 8.15256 8.71952 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.002359 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.392202 B =11868.888854 C =14148.907720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.065 0.935 4 C 0.054 3.946 5 N -0.679 5.679 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.624 6.624 9 N -0.575 5.575 10 C -0.331 4.331 11 H 0.076 0.924 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.990 3.010 15 H -0.275 1.275 16 H -0.270 1.270 17 H -0.271 1.271 18 N -0.698 5.698 19 C 0.563 3.437 20 O -0.589 6.589 21 C -0.201 4.201 22 C -0.045 4.045 23 C -0.129 4.129 24 C 0.101 3.899 25 N -0.350 5.350 26 N -0.409 5.409 27 H 0.463 0.537 28 C 0.142 3.858 29 C -0.254 4.254 30 C 0.043 3.957 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.339 0.661 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.410 0.590 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.247 0.753 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.715 4.257 19.623 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.075 4.075 5 N -0.311 5.311 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.510 6.510 9 N -0.212 5.212 10 C -0.461 4.461 11 H 0.094 0.906 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.814 3.186 15 H -0.200 1.200 16 H -0.196 1.196 17 H -0.196 1.196 18 N -0.348 5.348 19 C 0.353 3.647 20 O -0.472 6.472 21 C -0.206 4.206 22 C -0.068 4.068 23 C -0.150 4.150 24 C -0.053 4.053 25 N -0.178 5.178 26 N -0.109 5.109 27 H 0.312 0.688 28 C -0.019 4.019 29 C -0.264 4.264 30 C 0.021 3.979 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.157 0.843 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.247 0.753 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.263 0.737 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.022 3.654 21.216 26.836 hybrid contribution 0.823 0.544 -1.269 1.607 sum -15.199 4.197 19.947 25.427 Atomic orbital electron populations 1.22056 0.93112 1.03222 1.02632 1.20989 0.94917 0.96335 0.83723 0.91714 1.22392 0.86772 1.02186 0.96178 1.60069 1.05411 1.26295 1.39316 1.21546 0.90170 1.01883 0.93001 1.20982 0.90755 0.82326 0.83464 1.90512 1.72893 1.52976 1.34610 1.41937 1.06784 1.51895 1.20597 1.19659 0.83171 1.36757 1.06467 0.90599 1.25994 1.04727 0.95927 0.94615 1.69665 1.38102 1.38631 1.09700 0.84912 0.77174 0.78308 0.78199 1.19985 1.19570 1.19607 1.45744 1.65886 1.14605 1.08610 1.18323 0.76609 0.85903 0.83902 1.90707 1.53490 1.17002 1.86035 1.19504 1.11632 0.95191 0.94246 1.20790 0.94653 0.92551 0.98765 1.19913 1.05196 1.00744 0.89123 1.21324 0.96554 0.94003 0.93409 1.77606 1.30996 1.08271 1.00929 1.46406 1.45153 1.06049 1.13311 0.68842 1.23670 0.92686 0.94934 0.90585 1.19854 1.16117 0.94695 0.95685 1.20795 0.88737 0.99296 0.89063 0.90798 0.93465 0.89936 0.88391 0.91960 0.84256 0.87147 0.91491 0.76914 0.91338 0.75269 0.83891 0.84198 0.73719 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.48 71.98 0.68 -1.88 16 2 C 0.15 3.14 2.81 44.99 0.13 3.26 16 3 H 0.06 1.70 7.58 -2.39 -0.02 1.69 16 4 C 0.05 1.07 5.24 86.30 0.45 1.53 16 5 N -0.68 -19.93 5.85 -517.93 -3.03 -22.96 16 6 C 0.07 2.12 6.17 85.56 0.53 2.65 16 7 C 0.44 20.49 7.82 87.66 0.69 21.18 16 8 O -0.62 -34.68 15.78 -3.06 -0.05 -34.73 16 9 N -0.57 -29.25 5.29 -306.98 -1.62 -30.88 16 10 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 11 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 12 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 13 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 14 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 18 N -0.70 -16.55 4.75 -445.71 -2.12 -18.67 16 19 C 0.56 15.87 7.71 86.69 0.67 16.54 16 20 O -0.59 -19.93 15.92 -4.04 -0.06 -19.99 16 21 C -0.20 -5.12 5.86 -20.15 -0.12 -5.24 16 22 C -0.04 -1.04 9.39 22.25 0.21 -0.83 16 23 C -0.13 -3.06 10.05 22.34 0.22 -2.84 16 24 C 0.10 2.46 7.49 42.27 0.32 2.77 16 25 N -0.35 -7.86 12.69 -48.55 -0.62 -8.48 16 26 N -0.41 -4.81 7.17 -56.26 -0.40 -5.21 16 27 H 0.46 1.45 8.96 -213.44 -1.91 -0.46 16 28 C 0.14 1.45 12.09 84.46 1.02 2.47 16 29 C -0.25 -5.07 6.32 -20.26 -0.13 -5.20 16 30 C 0.04 0.97 9.64 22.85 0.22 1.19 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.34 11.40 8.43 -89.69 -0.76 10.64 16 37 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 40 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.41 8.69 6.53 -92.71 -0.61 8.08 16 42 H 0.14 2.78 6.27 -2.91 -0.02 2.76 16 43 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 44 H 0.25 -0.32 8.06 -2.91 -0.02 -0.35 16 45 H 0.15 2.97 7.58 -2.91 -0.02 2.95 16 Total: -1.00 -83.03 388.45 -2.34 -85.37 By element: Atomic # 1 Polarization: 45.09 SS G_CDS: -2.92 Total: 42.17 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 6.17 Total: 17.30 kcal Atomic # 7 Polarization: -127.95 SS G_CDS: -7.50 Total: -135.46 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -0.11 Total: -54.72 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -83.03 -2.34 -85.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715946392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.785 kcal (2) G-P(sol) polarization free energy of solvation -83.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds