Wall clock time and date at job start Wed Apr 1 2020 04:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47566 * 2 1 4 4 C 1.53006 * 109.47268 * 120.00134 * 2 1 3 5 5 N 1.46898 * 109.47138 * 174.99901 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00058 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00409 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47138 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47229 * 119.99992 * 14 12 10 17 17 H 1.48497 * 109.47429 * 239.99972 * 14 12 10 18 18 N 1.46500 * 109.47187 * 239.99643 * 2 1 3 19 19 C 1.34783 * 119.99492 * 85.00558 * 18 2 1 20 20 O 1.21634 * 120.00025 * 359.97438 * 19 18 2 21 21 C 1.47221 * 119.99905 * 180.02562 * 19 18 2 22 22 C 1.38944 * 120.86434 * 359.97438 * 21 19 18 23 23 C 1.39739 * 119.30127 * 179.97438 * 22 21 19 24 24 C 1.35110 * 121.13972 * 0.02562 * 23 22 21 25 25 N 1.36153 * 121.72125 * 359.97438 * 24 23 22 26 26 C 1.37000 * 132.64134 * 179.97438 * 25 24 23 27 27 C 1.34955 * 107.14975 * 180.02562 * 26 25 24 28 28 N 1.33742 * 108.60857 * 359.97438 * 27 26 25 29 29 C 1.31987 * 109.16523 * 359.76263 * 28 27 26 30 30 H 1.09000 * 109.47314 * 59.99687 * 1 2 3 31 31 H 1.09004 * 109.47456 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47076 * 300.00066 * 1 2 3 33 33 H 1.08997 * 109.46770 * 54.99847 * 4 2 1 34 34 H 1.08995 * 109.47019 * 295.00060 * 4 2 1 35 35 H 1.00904 * 110.99913 * 303.95145 * 5 4 2 36 36 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 37 37 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 38 38 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 39 39 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 40 40 H 0.96993 * 120.00698 * 265.00113 * 18 2 1 41 41 H 1.08004 * 120.34687 * 0.02562 * 22 21 19 42 42 H 1.07995 * 119.43310 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.14249 * 180.02562 * 24 23 22 44 44 H 1.07998 * 126.42734 * 359.97438 * 26 25 24 45 45 H 1.08003 * 125.69654 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5040 -0.8267 1.1904 6 6 4.0303 -1.5160 2.3762 7 6 5.5315 -1.6056 2.2801 8 8 6.1065 -1.1405 1.3187 9 7 6.2351 -2.2025 3.2626 10 6 7.6009 -2.2835 3.1754 11 1 8.1129 -1.8694 2.3194 12 6 8.3265 -2.8983 4.1885 13 7 7.7035 -3.4018 5.2303 14 14 10.1873 -3.0094 4.0695 15 1 10.6417 -2.3709 2.8080 16 1 10.8000 -2.3091 5.2268 17 1 10.5997 -4.4359 4.0793 18 7 2.0183 -0.6907 -1.1961 19 6 2.1471 -0.0182 -2.3571 20 8 1.8574 1.1618 -2.4118 21 6 2.6373 -0.7124 -3.5593 22 6 2.9728 -2.0600 -3.5173 23 6 3.4343 -2.6864 -4.6780 24 6 3.5596 -2.0042 -5.8375 25 7 3.2436 -0.6830 -5.9284 26 6 3.2831 0.2114 -6.9654 27 6 2.8539 1.3972 -6.4848 28 7 2.5551 1.2497 -5.1895 29 6 2.7779 -0.0014 -4.8332 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -1.7198 1.2951 34 1 1.7516 -0.1584 2.1370 35 1 3.7995 -1.2885 0.3432 36 1 3.7557 -0.9589 3.2720 37 1 3.6094 -2.5201 2.4294 38 1 5.7753 -2.5740 4.0315 39 1 8.2099 -3.8313 5.9374 40 1 2.2490 -1.6318 -1.1526 41 1 2.8771 -2.6177 -2.5973 42 1 3.6961 -3.7337 -4.6476 43 1 3.9191 -2.5206 -6.7153 44 1 3.5992 0.0063 -7.9775 45 1 2.7665 2.3125 -7.0514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715996600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:52 Heat of formation + Delta-G solvation = 31.549975 kcal Electronic energy + Delta-G solvation = -29066.242663 eV Core-core repulsion = 24892.535128 eV Total energy + Delta-G solvation = -4173.707535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -42.93893 -39.88983 -38.32268 -37.49662 -36.65501 -34.27818 -33.89452 -33.56339 -31.34782 -31.16484 -30.35784 -28.89156 -27.60280 -25.24901 -24.88982 -23.31085 -22.90250 -22.41782 -21.35920 -20.57796 -19.30512 -18.38192 -17.88627 -17.69693 -16.85959 -16.24772 -16.17377 -16.11422 -15.69104 -15.31556 -14.97943 -14.55918 -14.38232 -14.34879 -14.24223 -13.88658 -13.77038 -13.52318 -13.07680 -12.88572 -12.64096 -12.54863 -12.45543 -12.15764 -11.94412 -11.73593 -11.62199 -11.48410 -11.11010 -11.08340 -10.94829 -10.35682 -10.24429 -10.24024 -9.86965 -9.53713 -9.17581 -9.08403 -8.48440 -8.20153 -8.09773 -7.97723 -6.43594 -3.84294 0.01067 0.98168 2.19018 2.50805 2.77942 3.01443 3.14904 3.25759 3.33101 3.50469 3.80776 3.88614 4.00930 4.07036 4.27133 4.31766 4.43528 4.50754 4.81966 4.97417 5.00647 5.13696 5.18261 5.20662 5.21770 5.27297 5.35276 5.44197 5.52285 5.57645 5.59543 5.63460 5.75212 5.93955 5.98745 6.03412 6.10625 6.24515 6.36658 6.43187 6.70848 7.14141 7.38640 7.53868 7.58698 7.72221 8.04814 8.19598 8.59489 9.16418 9.52491 10.03967 10.74196 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011487 B = 0.002349 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.866940 B =11917.153532 C =13532.085019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.101 0.899 4 C 0.051 3.949 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.581 6.581 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.720 5.720 19 C 0.566 3.434 20 O -0.500 6.500 21 C -0.089 4.089 22 C -0.054 4.054 23 C -0.155 4.155 24 C 0.084 3.916 25 N -0.373 5.373 26 C -0.099 4.099 27 C 0.028 3.972 28 N -0.460 5.460 29 C 0.253 3.747 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.089 0.911 35 H 0.347 0.653 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.394 0.606 41 H 0.148 0.852 42 H 0.158 0.842 43 H 0.166 0.834 44 H 0.185 0.815 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.985 -2.318 -19.114 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.119 0.881 4 C -0.079 4.079 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.465 6.465 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.373 5.373 19 C 0.351 3.649 20 O -0.374 6.374 21 C -0.095 4.095 22 C -0.078 4.078 23 C -0.176 4.176 24 C -0.039 4.039 25 N -0.046 5.046 26 C -0.229 4.229 27 C -0.122 4.122 28 N -0.178 5.178 29 C 0.006 3.994 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.166 0.834 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.229 0.771 41 H 0.166 0.834 42 H 0.176 0.824 43 H 0.183 0.817 44 H 0.202 0.798 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.889 0.075 -18.940 24.092 hybrid contribution 0.970 -2.507 -0.244 2.699 sum -13.919 -2.432 -19.184 23.826 Atomic orbital electron populations 1.22154 0.94927 1.02053 1.02908 1.21056 0.93450 0.98627 0.82617 0.88144 1.22317 0.88769 0.98987 0.97871 1.60008 1.07534 1.57540 1.04895 1.21700 0.95135 0.96921 0.94519 1.19813 0.88095 0.84250 0.85345 1.90538 1.71109 1.51371 1.33525 1.41870 1.07429 1.50872 1.19908 1.19750 0.81517 1.34921 1.06579 0.87891 1.25262 1.00688 0.96822 0.95213 1.69621 1.36608 1.38678 1.09424 0.85806 0.82252 0.77845 0.78486 1.19212 1.20718 1.20783 1.45855 1.68164 1.13672 1.09623 1.17466 0.78505 0.86629 0.82295 1.90885 1.47756 1.14521 1.84280 1.20193 1.05488 0.92935 0.90846 1.21674 0.94309 0.92598 0.99195 1.20646 1.03940 1.01719 0.91253 1.21683 0.99260 0.82130 1.00816 1.42938 1.42084 1.08459 1.11134 1.22694 1.16021 0.90159 0.94004 1.22718 1.00335 0.97754 0.91413 1.70839 1.21647 1.13005 1.12269 1.21541 1.01717 0.88372 0.87748 0.91767 0.92574 0.91283 0.94964 0.89300 0.83359 0.89404 0.93861 0.77467 0.91927 0.77137 0.83433 0.82415 0.81712 0.79816 0.80061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 37.15 0.35 -1.18 16 2 C 0.15 1.69 2.88 -67.93 -0.20 1.50 16 3 H 0.10 1.45 7.58 -51.93 -0.39 1.05 16 4 C 0.05 0.57 5.30 -3.82 -0.02 0.55 16 5 N -0.67 -10.38 6.12 -115.05 -0.70 -11.09 16 6 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 7 C 0.44 10.23 7.82 -10.99 -0.09 10.14 16 8 O -0.58 -15.75 15.78 5.55 0.09 -15.66 16 9 N -0.56 -14.11 5.29 -10.96 -0.06 -14.16 16 10 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 11 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 14 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 18 N -0.72 -8.16 4.31 -54.95 -0.24 -8.40 16 19 C 0.57 8.17 7.74 -12.61 -0.10 8.07 16 20 O -0.50 -9.27 15.86 5.25 0.08 -9.19 16 21 C -0.09 -1.13 6.06 -102.63 -0.62 -1.75 16 22 C -0.05 -0.46 9.63 -38.76 -0.37 -0.83 16 23 C -0.15 -1.00 9.91 -40.13 -0.40 -1.40 16 24 C 0.08 0.59 10.88 -16.75 -0.18 0.41 16 25 N -0.37 -3.91 2.94 -61.09 -0.18 -4.09 16 26 C -0.10 -0.90 11.76 -16.41 -0.19 -1.09 16 27 C 0.03 0.31 11.83 -17.89 -0.21 0.10 16 28 N -0.46 -7.25 10.70 -11.32 -0.12 -7.37 16 29 C 0.25 3.58 7.67 -154.13 -1.18 2.40 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.35 5.47 7.28 -39.29 -0.29 5.19 16 36 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.39 3.42 6.25 -40.82 -0.26 3.16 16 41 H 0.15 0.85 6.48 -52.48 -0.34 0.51 16 42 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 43 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.18 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -38.71 387.39 -8.83 -47.54 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.76 Total: 14.45 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: -3.48 Total: 9.81 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -0.58 Total: -68.70 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: 0.17 Total: -24.85 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.71 -8.83 -47.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715996600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.093 kcal (2) G-P(sol) polarization free energy of solvation -38.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds