Wall clock time and date at job start Wed Apr 1 2020 04:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47566 * 2 1 4 4 C 1.53006 * 109.47268 * 120.00134 * 2 1 3 5 5 N 1.46898 * 109.47138 * 174.99901 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00058 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00409 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47138 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47229 * 119.99992 * 14 12 10 17 17 H 1.48497 * 109.47429 * 239.99972 * 14 12 10 18 18 N 1.46500 * 109.47187 * 239.99643 * 2 1 3 19 19 C 1.34783 * 119.99492 * 85.00558 * 18 2 1 20 20 O 1.21634 * 120.00025 * 359.97438 * 19 18 2 21 21 C 1.47221 * 119.99905 * 180.02562 * 19 18 2 22 22 C 1.38944 * 120.86434 * 359.97438 * 21 19 18 23 23 C 1.39739 * 119.30127 * 179.97438 * 22 21 19 24 24 C 1.35110 * 121.13972 * 0.02562 * 23 22 21 25 25 N 1.36153 * 121.72125 * 359.97438 * 24 23 22 26 26 C 1.37000 * 132.64134 * 179.97438 * 25 24 23 27 27 C 1.34955 * 107.14975 * 180.02562 * 26 25 24 28 28 N 1.33742 * 108.60857 * 359.97438 * 27 26 25 29 29 C 1.31987 * 109.16523 * 359.76263 * 28 27 26 30 30 H 1.09000 * 109.47314 * 59.99687 * 1 2 3 31 31 H 1.09004 * 109.47456 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47076 * 300.00066 * 1 2 3 33 33 H 1.08997 * 109.46770 * 54.99847 * 4 2 1 34 34 H 1.08995 * 109.47019 * 295.00060 * 4 2 1 35 35 H 1.00904 * 110.99913 * 303.95145 * 5 4 2 36 36 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 37 37 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 38 38 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 39 39 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 40 40 H 0.96993 * 120.00698 * 265.00113 * 18 2 1 41 41 H 1.08004 * 120.34687 * 0.02562 * 22 21 19 42 42 H 1.07995 * 119.43310 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.14249 * 180.02562 * 24 23 22 44 44 H 1.07998 * 126.42734 * 359.97438 * 26 25 24 45 45 H 1.08003 * 125.69654 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5040 -0.8267 1.1904 6 6 4.0303 -1.5160 2.3762 7 6 5.5315 -1.6056 2.2801 8 8 6.1065 -1.1405 1.3187 9 7 6.2351 -2.2025 3.2626 10 6 7.6009 -2.2835 3.1754 11 1 8.1129 -1.8694 2.3194 12 6 8.3265 -2.8983 4.1885 13 7 7.7035 -3.4018 5.2303 14 14 10.1873 -3.0094 4.0695 15 1 10.6417 -2.3709 2.8080 16 1 10.8000 -2.3091 5.2268 17 1 10.5997 -4.4359 4.0793 18 7 2.0183 -0.6907 -1.1961 19 6 2.1471 -0.0182 -2.3571 20 8 1.8574 1.1618 -2.4118 21 6 2.6373 -0.7124 -3.5593 22 6 2.9728 -2.0600 -3.5173 23 6 3.4343 -2.6864 -4.6780 24 6 3.5596 -2.0042 -5.8375 25 7 3.2436 -0.6830 -5.9284 26 6 3.2831 0.2114 -6.9654 27 6 2.8539 1.3972 -6.4848 28 7 2.5551 1.2497 -5.1895 29 6 2.7779 -0.0014 -4.8332 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -1.7198 1.2951 34 1 1.7516 -0.1584 2.1370 35 1 3.7995 -1.2885 0.3432 36 1 3.7557 -0.9589 3.2720 37 1 3.6094 -2.5201 2.4294 38 1 5.7753 -2.5740 4.0315 39 1 8.2099 -3.8313 5.9374 40 1 2.2490 -1.6318 -1.1526 41 1 2.8771 -2.6177 -2.5973 42 1 3.6961 -3.7337 -4.6476 43 1 3.9191 -2.5206 -6.7153 44 1 3.5992 0.0063 -7.9775 45 1 2.7665 2.3125 -7.0514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715996600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:45 Heat of formation + Delta-G solvation = 1.147513 kcal Electronic energy + Delta-G solvation = -29067.561013 eV Core-core repulsion = 24892.535128 eV Total energy + Delta-G solvation = -4175.025885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -43.68551 -40.90799 -40.10456 -38.21282 -37.80973 -36.02079 -35.12752 -34.59473 -33.24628 -32.19032 -31.08376 -29.65102 -28.96006 -26.71605 -25.85559 -24.62780 -23.66619 -23.23623 -22.19182 -21.55504 -21.06811 -19.91451 -19.19765 -18.46839 -17.90815 -17.47535 -17.13412 -16.96008 -16.83613 -16.36226 -16.30114 -16.10662 -15.77186 -15.39433 -15.26267 -15.05927 -14.99998 -14.50121 -14.32203 -14.04173 -13.58388 -13.52483 -13.35674 -13.14792 -13.08327 -13.01890 -12.87536 -12.78804 -12.65457 -12.39679 -12.11878 -11.97014 -11.87691 -11.50814 -11.17280 -10.86235 -10.36079 -10.14349 -10.00273 -9.82592 -9.29426 -8.93633 -8.46273 -5.94511 -0.69620 0.29308 1.36613 1.42344 1.50323 1.56068 1.71712 1.94794 2.06760 2.15574 2.29560 2.63179 2.90300 3.11318 3.21440 3.42770 3.53081 3.70454 3.82995 3.84528 3.92247 4.21178 4.28655 4.34061 4.40182 4.48019 4.52183 4.55973 4.61977 4.69317 4.69963 4.77718 4.79612 4.92401 4.99876 5.10138 5.28276 5.39957 5.41957 5.50715 5.61753 5.88713 6.05968 6.10844 6.39799 6.49589 6.61542 6.94427 7.14076 7.23031 7.57926 8.13776 8.71226 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011487 B = 0.002349 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.866940 B =11917.153532 C =13532.085019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.062 0.938 4 C 0.059 3.941 5 N -0.690 5.690 6 C 0.066 3.934 7 C 0.436 3.564 8 O -0.625 6.625 9 N -0.573 5.573 10 C -0.332 4.332 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.990 3.010 15 H -0.275 1.275 16 H -0.273 1.273 17 H -0.268 1.268 18 N -0.706 5.706 19 C 0.561 3.439 20 O -0.561 6.561 21 C -0.146 4.146 22 C -0.025 4.025 23 C -0.160 4.160 24 C 0.090 3.910 25 N -0.378 5.378 26 C -0.080 4.080 27 C -0.005 4.005 28 N -0.527 5.527 29 C 0.221 3.779 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.343 0.657 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.408 0.592 41 H 0.175 0.825 42 H 0.203 0.797 43 H 0.214 0.786 44 H 0.232 0.768 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.928 -5.780 -19.636 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.080 0.920 4 C -0.070 4.070 5 N -0.324 5.324 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.512 6.512 9 N -0.210 5.210 10 C -0.461 4.461 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.814 3.186 15 H -0.200 1.200 16 H -0.198 1.198 17 H -0.193 1.193 18 N -0.360 5.360 19 C 0.348 3.652 20 O -0.439 6.439 21 C -0.152 4.152 22 C -0.049 4.049 23 C -0.180 4.180 24 C -0.031 4.031 25 N -0.051 5.051 26 C -0.209 4.209 27 C -0.154 4.154 28 N -0.246 5.246 29 C -0.026 4.026 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.162 0.838 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.246 0.754 41 H 0.192 0.808 42 H 0.220 0.780 43 H 0.230 0.770 44 H 0.248 0.752 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -14.860 -3.438 -19.434 24.704 hybrid contribution 0.959 -1.499 -0.162 1.786 sum -13.901 -4.937 -19.595 24.527 Atomic orbital electron populations 1.22058 0.93035 1.03377 1.02518 1.21010 0.94823 0.96857 0.83022 0.92007 1.22354 0.86129 1.00800 0.97744 1.59960 1.10340 1.57821 1.04251 1.21558 0.90073 0.99316 0.95702 1.20968 0.90809 0.82062 0.83805 1.90510 1.72907 1.52695 1.35081 1.41927 1.06805 1.51610 1.20670 1.19661 0.83157 1.36667 1.06648 0.90588 1.25998 1.04729 0.95915 0.94552 1.69671 1.38132 1.38537 1.09674 0.84907 0.77120 0.78366 0.78166 1.19986 1.19832 1.19329 1.45736 1.67273 1.14166 1.08786 1.17913 0.77607 0.86159 0.83481 1.90834 1.50765 1.17040 1.85305 1.20162 1.10168 0.94759 0.90081 1.22162 0.90711 0.90838 1.01200 1.21234 1.03085 1.03589 0.90099 1.22652 0.96979 0.80651 1.02865 1.43217 1.41774 1.09764 1.10366 1.23374 1.13522 0.88932 0.95120 1.23220 1.01596 0.99901 0.90644 1.70714 1.24101 1.15097 1.14735 1.21776 1.02878 0.88661 0.89311 0.94123 0.90254 0.89740 0.91572 0.88176 0.83767 0.87697 0.90483 0.76858 0.91306 0.75447 0.80793 0.78048 0.76956 0.75204 0.78335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.48 71.98 0.68 -2.10 16 2 C 0.15 3.43 2.88 44.99 0.13 3.56 16 3 H 0.06 1.93 7.58 -2.39 -0.02 1.92 16 4 C 0.06 1.19 5.30 86.31 0.46 1.65 16 5 N -0.69 -20.67 6.12 -517.92 -3.17 -23.84 16 6 C 0.07 2.08 6.17 85.56 0.53 2.61 16 7 C 0.44 20.24 7.82 87.66 0.69 20.92 16 8 O -0.63 -34.60 15.78 -3.06 -0.05 -34.65 16 9 N -0.57 -28.73 5.29 -306.99 -1.62 -30.35 16 10 C -0.33 -18.66 9.68 84.04 0.81 -17.84 16 11 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 12 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 13 N -0.92 -48.77 13.05 21.66 0.28 -48.48 16 14 Si 0.99 42.56 29.55 68.60 2.03 44.59 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 18 N -0.71 -16.29 4.31 -445.99 -1.92 -18.22 16 19 C 0.56 17.52 7.74 86.60 0.67 18.19 16 20 O -0.56 -23.21 15.86 -4.14 -0.07 -23.27 16 21 C -0.15 -3.87 6.06 -18.58 -0.11 -3.98 16 22 C -0.03 -0.39 9.63 22.80 0.22 -0.17 16 23 C -0.16 -1.49 9.91 21.91 0.22 -1.27 16 24 C 0.09 0.95 10.88 83.30 0.91 1.86 16 25 N -0.38 -7.51 2.94 -347.20 -1.02 -8.53 16 26 C -0.08 -1.36 11.76 83.13 0.98 -0.38 16 27 C -0.01 -0.13 11.83 83.65 0.99 0.86 16 28 N -0.53 -18.21 10.70 -189.72 -2.03 -20.24 16 29 C 0.22 6.61 7.67 135.76 1.04 7.65 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.34 10.56 7.28 -89.69 -0.65 9.91 16 36 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.40 18.74 7.90 -92.71 -0.73 18.00 16 39 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 40 H 0.41 6.61 6.25 -92.71 -0.58 6.03 16 41 H 0.17 1.52 6.48 -2.91 -0.02 1.50 16 42 H 0.20 0.09 8.06 -2.91 -0.02 0.07 16 43 H 0.21 0.10 8.06 -2.91 -0.02 0.07 16 44 H 0.23 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.20 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -93.09 387.39 0.20 -92.89 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.90 Total: 38.72 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: 8.67 Total: 31.38 kcal Atomic # 7 Polarization: -140.17 SS G_CDS: -9.48 Total: -149.66 kcal Atomic # 8 Polarization: -57.80 SS G_CDS: -0.11 Total: -57.92 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -93.09 0.20 -92.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715996600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.033 kcal (2) G-P(sol) polarization free energy of solvation -93.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds