Wall clock time and date at job start Wed Apr 1 2020 04:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.52995 * 109.47295 * 239.99616 * 2 1 3 5 5 N 1.46898 * 109.47107 * 185.00131 * 4 2 1 6 6 C 1.46898 * 110.99995 * 180.02562 * 5 4 2 7 7 C 1.50707 * 109.47178 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99402 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99842 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99550 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00357 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99599 * 179.97438 * 10 9 7 13 13 N 1.31403 * 120.00318 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99633 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47511 * 59.99687 * 14 12 10 16 16 H 1.48504 * 109.47189 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46967 * 299.99424 * 14 12 10 18 18 N 1.46505 * 109.46864 * 119.99788 * 2 1 3 19 19 C 1.34777 * 119.99724 * 275.00347 * 18 2 1 20 20 O 1.21593 * 120.00265 * 359.97438 * 19 18 2 21 21 C 1.47571 * 119.99598 * 179.72714 * 19 18 2 22 22 C 1.41755 * 120.01847 * 0.26662 * 21 19 18 23 23 C 1.35632 * 119.54759 * 179.97438 * 22 21 19 24 24 C 1.41171 * 119.50419 * 0.02562 * 23 22 21 25 25 N 1.32416 * 132.12287 * 179.97438 * 24 23 22 26 26 C 1.33591 * 109.22893 * 180.02562 * 25 24 23 27 27 C 1.34997 * 108.65946 * 359.97438 * 26 25 24 28 28 N 1.37010 * 107.14296 * 0.02562 * 27 26 25 29 29 C 1.35922 * 132.41666 * 180.27952 * 28 27 26 30 30 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 32 32 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 33 33 H 1.08997 * 109.47185 * 305.00386 * 4 2 1 34 34 H 1.09002 * 109.47351 * 65.00269 * 4 2 1 35 35 H 1.00900 * 110.99902 * 303.95714 * 5 4 2 36 36 H 1.08996 * 109.47477 * 299.99786 * 6 5 4 37 37 H 1.09004 * 109.47245 * 60.00092 * 6 5 4 38 38 H 0.97002 * 120.00054 * 359.97438 * 9 7 6 39 39 H 0.97001 * 120.00353 * 180.02562 * 13 12 10 40 40 H 0.97000 * 119.99792 * 94.99915 * 18 2 1 41 41 H 1.08004 * 120.22460 * 0.02562 * 22 21 19 42 42 H 1.08001 * 120.24398 * 179.97438 * 23 22 21 43 43 H 1.08000 * 125.67367 * 180.02562 * 26 25 24 44 44 H 1.07997 * 126.43065 * 180.02562 * 27 26 25 45 45 H 1.07995 * 119.75387 * 359.94691 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5041 -0.8267 -1.1902 6 6 4.0305 -1.5149 -2.3765 7 6 5.5318 -1.6045 -2.2804 8 8 6.1067 -1.1403 -1.3185 9 7 6.2357 -2.1996 -3.2637 10 6 7.6015 -2.2806 -3.1765 11 1 8.1134 -1.8680 -2.3197 12 6 8.3271 -2.8946 -4.1900 13 7 7.7042 -3.3980 -5.2318 14 14 10.1880 -3.0057 -4.0709 15 1 10.5615 -3.7658 -2.8511 16 1 10.7202 -3.7019 -5.2698 17 1 10.7617 -1.6380 -3.9969 18 7 2.0184 -0.6906 1.1963 19 6 2.1470 -0.0182 2.3572 20 8 1.8582 1.1617 2.4116 21 6 2.6331 -0.7153 3.5636 22 6 2.9702 -2.0907 3.5005 23 6 3.4166 -2.7218 4.6150 24 6 3.5381 -1.9992 5.8216 25 7 3.9377 -2.3542 7.0331 26 6 3.8722 -1.2960 7.8457 27 6 3.4209 -0.2371 7.1404 28 7 3.2053 -0.6683 5.8579 29 6 2.7634 -0.0346 4.7397 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8901 33 1 1.6055 -1.7198 -1.2950 34 1 1.7518 -0.1584 -2.1369 35 1 3.9280 0.0825 -1.0822 36 1 3.6098 -2.5190 -2.4307 37 1 3.7560 -0.9572 -3.2719 38 1 5.7759 -2.5706 -4.0331 39 1 8.2108 -3.8270 -5.9392 40 1 2.2490 -1.6318 1.1527 41 1 2.8732 -2.6321 2.5710 42 1 3.6762 -3.7695 4.5797 43 1 4.1370 -1.2885 8.8927 44 1 3.2600 0.7625 7.5165 45 1 2.5095 1.0142 4.7829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716418907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:22 Heat of formation + Delta-G solvation = 23.014720 kcal Electronic energy + Delta-G solvation = -28820.607994 eV Core-core repulsion = 24646.530342 eV Total energy + Delta-G solvation = -4174.077652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.38 seconds Orbital eigenvalues (eV) -43.10393 -40.18620 -38.38420 -37.42436 -36.60314 -34.47565 -34.02085 -33.65522 -31.68116 -31.23499 -30.19093 -29.04643 -27.66186 -25.22519 -24.69784 -23.44315 -23.25847 -22.10144 -21.59289 -20.72416 -19.29569 -18.53780 -17.95841 -17.59979 -16.86220 -16.55380 -16.24524 -16.03403 -15.46957 -15.13395 -14.91486 -14.80394 -14.61385 -14.41720 -14.19419 -14.03400 -13.90123 -13.55633 -13.35489 -13.27675 -12.67137 -12.61494 -12.12690 -12.04974 -11.98081 -11.84212 -11.59132 -11.51897 -11.35698 -11.04804 -11.02819 -10.46435 -10.43361 -10.24417 -10.22671 -9.53181 -9.31642 -9.09026 -8.53847 -8.19424 -8.17066 -7.99855 -6.44907 -3.85869 0.25693 0.78332 2.12853 2.28515 2.86767 3.02005 3.18194 3.24185 3.28598 3.39016 3.86489 3.90023 3.99788 4.20154 4.23862 4.32595 4.46706 4.58741 4.68715 4.96500 4.99909 5.04625 5.06519 5.13967 5.17558 5.23034 5.38073 5.46520 5.49879 5.53048 5.62321 5.72070 5.75458 5.81928 5.89634 5.96656 6.07570 6.20490 6.28731 6.33260 6.65390 7.06727 7.35564 7.51642 7.52186 7.53863 8.01635 8.02525 8.57461 9.14588 9.50448 10.01721 10.72639 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009901 B = 0.002366 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.427570 B =11830.413127 C =14063.669052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.089 0.911 4 C 0.047 3.953 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.696 5.696 19 C 0.575 3.425 20 O -0.546 6.546 21 C -0.155 4.155 22 C -0.075 4.075 23 C -0.081 4.081 24 C 0.233 3.767 25 N -0.493 5.493 26 C 0.034 3.966 27 C -0.097 4.097 28 N -0.368 5.368 29 C 0.131 3.869 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.351 0.649 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.407 0.593 41 H 0.149 0.851 42 H 0.158 0.842 43 H 0.183 0.817 44 H 0.185 0.815 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.761 4.035 15.364 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.107 0.893 4 C -0.084 4.084 5 N -0.300 5.300 6 C -0.082 4.082 7 C 0.224 3.776 8 O -0.467 6.467 9 N -0.199 5.199 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.347 5.347 19 C 0.361 3.639 20 O -0.425 6.425 21 C -0.161 4.161 22 C -0.099 4.099 23 C -0.101 4.101 24 C -0.011 4.011 25 N -0.212 5.212 26 C -0.116 4.116 27 C -0.227 4.227 28 N -0.040 5.040 29 C 0.005 3.995 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.171 0.829 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.243 0.757 41 H 0.167 0.833 42 H 0.176 0.824 43 H 0.200 0.800 44 H 0.203 0.797 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.230 3.780 16.532 23.474 hybrid contribution 0.495 0.732 -1.459 1.706 sum -15.735 4.512 15.073 22.252 Atomic orbital electron populations 1.22147 0.94720 1.02404 1.02772 1.21011 0.93735 0.97578 0.83600 0.89271 1.22328 0.89637 1.00799 0.95598 1.60083 1.02954 1.26961 1.40031 1.21681 0.95370 0.99851 0.91317 1.19793 0.87987 0.84709 0.85079 1.90536 1.71101 1.51864 1.33172 1.41858 1.07407 1.50929 1.19748 1.19648 0.81503 1.35328 1.06503 0.87991 1.25258 1.00712 0.96695 0.95206 1.69595 1.36832 1.38482 1.09384 0.85923 0.82097 0.78621 0.77628 1.19837 1.20953 1.19910 1.45664 1.65876 1.14521 1.08593 1.17585 0.77475 0.86086 0.82785 1.90788 1.51233 1.15287 1.85217 1.19369 1.07839 0.95059 0.93870 1.21118 0.96914 0.92760 0.99090 1.20199 1.00997 1.01006 0.87933 1.21197 1.02356 0.81740 0.95760 1.70764 1.22249 1.29206 0.98993 1.22572 1.00756 0.88080 1.00225 1.22781 1.14905 1.02677 0.82316 1.42842 1.41476 1.11242 1.08426 1.21672 0.94840 0.99184 0.83806 0.92169 0.91820 0.91407 0.90312 0.93650 0.82917 0.89555 0.93790 0.77471 0.91790 0.75665 0.83333 0.82423 0.79988 0.79742 0.80501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.48 37.16 0.35 -0.93 16 2 C 0.15 1.42 2.81 -67.93 -0.19 1.23 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 4 C 0.05 0.46 5.24 -3.83 -0.02 0.44 16 5 N -0.67 -9.43 5.85 -115.06 -0.67 -10.10 16 6 C 0.05 0.81 6.17 -4.97 -0.03 0.78 16 7 C 0.44 9.93 7.82 -10.98 -0.09 9.85 16 8 O -0.58 -15.37 15.78 5.55 0.09 -15.28 16 9 N -0.56 -13.88 5.29 -10.96 -0.06 -13.93 16 10 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 11 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 14 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 N -0.70 -7.06 4.75 -54.83 -0.26 -7.32 16 19 C 0.57 6.78 7.73 -12.45 -0.10 6.69 16 20 O -0.55 -7.88 15.94 5.28 0.08 -7.79 16 21 C -0.16 -1.65 5.84 -105.37 -0.61 -2.26 16 22 C -0.07 -0.71 9.53 -39.17 -0.37 -1.08 16 23 C -0.08 -0.83 10.09 -39.40 -0.40 -1.23 16 24 C 0.23 2.85 7.81 -155.93 -1.22 1.63 16 25 N -0.49 -6.35 11.31 -12.72 -0.14 -6.50 16 26 C 0.03 0.33 11.82 -17.94 -0.21 0.12 16 27 C -0.10 -0.87 11.75 -16.39 -0.19 -1.06 16 28 N -0.37 -4.00 2.93 -62.31 -0.18 -4.18 16 29 C 0.13 1.35 10.49 -16.36 -0.17 1.18 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.35 5.52 8.43 -39.29 -0.33 5.18 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.39 9.21 7.90 -40.82 -0.32 8.88 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.41 3.64 6.64 -40.82 -0.27 3.37 16 41 H 0.15 1.08 6.44 -52.48 -0.34 0.74 16 42 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.18 1.57 7.56 -52.49 -0.40 1.18 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -34.93 388.71 -8.87 -43.80 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -5.79 Total: 15.57 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -3.49 Total: 7.45 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -0.59 Total: -65.47 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.17 Total: -23.07 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.93 -8.87 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716418907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.816 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.38 seconds