Wall clock time and date at job start Wed Apr 1 2020 04:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.52995 * 109.47295 * 239.99616 * 2 1 3 5 5 N 1.46898 * 109.47107 * 185.00131 * 4 2 1 6 6 C 1.46898 * 110.99995 * 180.02562 * 5 4 2 7 7 C 1.50707 * 109.47178 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99402 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99842 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99550 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00357 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99599 * 179.97438 * 10 9 7 13 13 N 1.31403 * 120.00318 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99633 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47511 * 59.99687 * 14 12 10 16 16 H 1.48504 * 109.47189 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46967 * 299.99424 * 14 12 10 18 18 N 1.46505 * 109.46864 * 119.99788 * 2 1 3 19 19 C 1.34777 * 119.99724 * 275.00347 * 18 2 1 20 20 O 1.21593 * 120.00265 * 359.97438 * 19 18 2 21 21 C 1.47571 * 119.99598 * 179.72714 * 19 18 2 22 22 C 1.41755 * 120.01847 * 0.26662 * 21 19 18 23 23 C 1.35632 * 119.54759 * 179.97438 * 22 21 19 24 24 C 1.41171 * 119.50419 * 0.02562 * 23 22 21 25 25 N 1.32416 * 132.12287 * 179.97438 * 24 23 22 26 26 C 1.33591 * 109.22893 * 180.02562 * 25 24 23 27 27 C 1.34997 * 108.65946 * 359.97438 * 26 25 24 28 28 N 1.37010 * 107.14296 * 0.02562 * 27 26 25 29 29 C 1.35922 * 132.41666 * 180.27952 * 28 27 26 30 30 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 32 32 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 33 33 H 1.08997 * 109.47185 * 305.00386 * 4 2 1 34 34 H 1.09002 * 109.47351 * 65.00269 * 4 2 1 35 35 H 1.00900 * 110.99902 * 303.95714 * 5 4 2 36 36 H 1.08996 * 109.47477 * 299.99786 * 6 5 4 37 37 H 1.09004 * 109.47245 * 60.00092 * 6 5 4 38 38 H 0.97002 * 120.00054 * 359.97438 * 9 7 6 39 39 H 0.97001 * 120.00353 * 180.02562 * 13 12 10 40 40 H 0.97000 * 119.99792 * 94.99915 * 18 2 1 41 41 H 1.08004 * 120.22460 * 0.02562 * 22 21 19 42 42 H 1.08001 * 120.24398 * 179.97438 * 23 22 21 43 43 H 1.08000 * 125.67367 * 180.02562 * 26 25 24 44 44 H 1.07997 * 126.43065 * 180.02562 * 27 26 25 45 45 H 1.07995 * 119.75387 * 359.94691 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5041 -0.8267 -1.1902 6 6 4.0305 -1.5149 -2.3765 7 6 5.5318 -1.6045 -2.2804 8 8 6.1067 -1.1403 -1.3185 9 7 6.2357 -2.1996 -3.2637 10 6 7.6015 -2.2806 -3.1765 11 1 8.1134 -1.8680 -2.3197 12 6 8.3271 -2.8946 -4.1900 13 7 7.7042 -3.3980 -5.2318 14 14 10.1880 -3.0057 -4.0709 15 1 10.5615 -3.7658 -2.8511 16 1 10.7202 -3.7019 -5.2698 17 1 10.7617 -1.6380 -3.9969 18 7 2.0184 -0.6906 1.1963 19 6 2.1470 -0.0182 2.3572 20 8 1.8582 1.1617 2.4116 21 6 2.6331 -0.7153 3.5636 22 6 2.9702 -2.0907 3.5005 23 6 3.4166 -2.7218 4.6150 24 6 3.5381 -1.9992 5.8216 25 7 3.9377 -2.3542 7.0331 26 6 3.8722 -1.2960 7.8457 27 6 3.4209 -0.2371 7.1404 28 7 3.2053 -0.6683 5.8579 29 6 2.7634 -0.0346 4.7397 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8901 33 1 1.6055 -1.7198 -1.2950 34 1 1.7518 -0.1584 -2.1369 35 1 3.9280 0.0825 -1.0822 36 1 3.6098 -2.5190 -2.4307 37 1 3.7560 -0.9572 -3.2719 38 1 5.7759 -2.5706 -4.0331 39 1 8.2108 -3.8270 -5.9392 40 1 2.2490 -1.6318 1.1527 41 1 2.8732 -2.6321 2.5710 42 1 3.6762 -3.7695 4.5797 43 1 4.1370 -1.2885 8.8927 44 1 3.2600 0.7625 7.5165 45 1 2.5095 1.0142 4.7829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716418907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:17 Heat of formation + Delta-G solvation = -2.633656 kcal Electronic energy + Delta-G solvation = -28821.720191 eV Core-core repulsion = 24646.530342 eV Total energy + Delta-G solvation = -4175.189849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.88054 -41.07763 -40.10918 -38.29194 -37.59007 -36.02946 -35.25135 -34.71218 -33.24642 -32.50221 -30.99621 -29.80674 -28.92875 -26.70619 -25.66517 -24.51799 -24.19022 -22.88381 -22.39279 -21.59722 -21.01449 -19.89366 -19.34039 -18.52130 -17.80744 -17.50753 -17.39131 -17.05364 -16.70343 -16.37415 -16.13410 -15.90714 -15.73075 -15.60295 -15.23062 -15.12377 -14.86761 -14.76239 -14.47148 -14.13464 -14.00171 -13.54904 -13.38444 -13.06491 -12.96788 -12.84472 -12.79941 -12.76270 -12.66878 -12.42406 -12.14359 -12.12856 -11.81425 -11.49111 -11.26035 -11.17415 -10.33764 -10.16260 -9.99920 -9.87923 -9.32430 -8.96202 -8.45905 -5.94060 -0.54323 0.00681 1.36651 1.39659 1.41899 1.49397 1.52109 2.04034 2.08511 2.20622 2.29498 2.56074 2.92086 3.17108 3.21991 3.46156 3.51543 3.58747 3.69643 3.83165 3.89823 4.20069 4.29986 4.36525 4.38109 4.41952 4.46372 4.55862 4.63290 4.69080 4.78320 4.81322 4.83190 4.88581 4.99471 5.08303 5.32079 5.32717 5.41633 5.51788 5.58174 5.88477 5.88913 6.10803 6.34379 6.51884 6.61975 6.75736 7.14429 7.15557 7.59047 8.14779 8.71112 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009901 B = 0.002366 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.427570 B =11830.413127 C =14063.669052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.068 0.932 4 C 0.052 3.948 5 N -0.679 5.679 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.624 6.624 9 N -0.574 5.574 10 C -0.333 4.333 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.989 3.011 15 H -0.273 1.273 16 H -0.270 1.270 17 H -0.273 1.273 18 N -0.689 5.689 19 C 0.573 3.427 20 O -0.578 6.578 21 C -0.165 4.165 22 C -0.070 4.070 23 C -0.092 4.092 24 C 0.206 3.794 25 N -0.527 5.527 26 C 0.019 3.981 27 C -0.093 4.093 28 N -0.374 5.374 29 C 0.129 3.871 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.340 0.660 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.414 0.586 41 H 0.170 0.830 42 H 0.171 0.829 43 H 0.211 0.789 44 H 0.220 0.780 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 3.769 14.921 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 H 0.087 0.913 4 C -0.077 4.077 5 N -0.310 5.310 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.511 6.511 9 N -0.212 5.212 10 C -0.462 4.462 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.813 3.187 15 H -0.198 1.198 16 H -0.195 1.195 17 H -0.199 1.199 18 N -0.339 5.339 19 C 0.360 3.640 20 O -0.460 6.460 21 C -0.171 4.171 22 C -0.094 4.094 23 C -0.112 4.112 24 C -0.037 4.037 25 N -0.248 5.248 26 C -0.130 4.130 27 C -0.221 4.221 28 N -0.046 5.046 29 C 0.003 3.997 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.158 0.842 36 H 0.130 0.870 37 H 0.085 0.915 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.251 0.749 41 H 0.187 0.813 42 H 0.189 0.811 43 H 0.228 0.772 44 H 0.237 0.763 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -17.337 3.484 16.068 23.893 hybrid contribution 0.780 0.868 -1.252 1.712 sum -16.557 4.351 14.815 22.640 Atomic orbital electron populations 1.22070 0.92899 1.03413 1.02789 1.21046 0.95012 0.96455 0.83347 0.91331 1.22409 0.86784 1.02344 0.96128 1.60087 1.05387 1.26275 1.39297 1.21543 0.90098 1.01937 0.93020 1.20992 0.90789 0.82333 0.83459 1.90508 1.72914 1.53025 1.34622 1.41931 1.06746 1.51864 1.20620 1.19585 0.83230 1.36922 1.06514 0.90549 1.25974 1.04638 0.95912 0.94627 1.69649 1.38231 1.38487 1.09642 0.85052 0.77197 0.78541 0.77951 1.19795 1.19477 1.19881 1.45679 1.65132 1.14782 1.08323 1.17744 0.77113 0.85745 0.83405 1.90766 1.52855 1.16603 1.85750 1.19402 1.08408 0.95643 0.93660 1.21301 0.96147 0.92306 0.99673 1.20439 1.01341 1.01739 0.87698 1.21554 1.03271 0.82654 0.96256 1.70727 1.23361 1.30846 0.99833 1.23169 1.00729 0.87630 1.01433 1.23457 1.13286 1.03972 0.81415 1.43012 1.41473 1.11032 1.09091 1.21874 0.94406 0.99642 0.83748 0.90616 0.93315 0.89899 0.88166 0.91897 0.84233 0.87043 0.91535 0.76913 0.91323 0.74856 0.81299 0.81125 0.77197 0.76304 0.79426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.48 71.98 0.68 -1.39 16 2 C 0.15 2.60 2.81 44.99 0.13 2.73 16 3 H 0.07 1.54 7.58 -2.39 -0.02 1.52 16 4 C 0.05 0.88 5.24 86.30 0.45 1.33 16 5 N -0.68 -17.91 5.85 -517.94 -3.03 -20.94 16 6 C 0.07 1.97 6.17 85.56 0.53 2.50 16 7 C 0.44 19.65 7.82 87.66 0.69 20.34 16 8 O -0.62 -33.45 15.78 -3.06 -0.05 -33.50 16 9 N -0.57 -28.42 5.29 -306.98 -1.62 -30.04 16 10 C -0.33 -18.60 9.68 84.04 0.81 -17.78 16 11 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 12 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 13 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 14 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 N -0.69 -13.16 4.75 -445.64 -2.12 -15.27 16 19 C 0.57 13.36 7.73 86.71 0.67 14.03 16 20 O -0.58 -16.80 15.94 -4.01 -0.06 -16.86 16 21 C -0.16 -3.47 5.84 -20.35 -0.12 -3.59 16 22 C -0.07 -1.30 9.53 22.54 0.21 -1.08 16 23 C -0.09 -1.89 10.09 22.39 0.23 -1.66 16 24 C 0.21 5.07 7.81 134.16 1.05 6.11 16 25 N -0.53 -13.66 11.31 -194.15 -2.20 -15.86 16 26 C 0.02 0.36 11.82 83.68 0.99 1.35 16 27 C -0.09 -1.55 11.75 83.14 0.98 -0.58 16 28 N -0.37 -7.98 2.93 -351.04 -1.03 -9.01 16 29 C 0.13 2.63 10.49 83.66 0.88 3.51 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.34 10.41 8.43 -89.69 -0.76 9.66 16 36 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.40 18.51 7.90 -92.71 -0.73 17.78 16 39 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 40 H 0.41 6.66 6.64 -92.71 -0.62 6.05 16 41 H 0.17 2.23 6.44 -2.91 -0.02 2.22 16 42 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 43 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.19 3.29 7.56 -2.91 -0.02 3.27 16 Total: -1.00 -77.38 388.71 -0.20 -77.58 By element: Atomic # 1 Polarization: 43.08 SS G_CDS: -1.04 Total: 42.04 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 8.64 Total: 25.68 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -9.71 Total: -139.57 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -0.11 Total: -50.36 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -77.38 -0.20 -77.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716418907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.946 kcal (2) G-P(sol) polarization free energy of solvation -77.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds