Wall clock time and date at job start Wed Apr 1 2020 03:07:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09004 * 109.47365 * 2 1
4 4 N 1.46500 * 109.47461 * 120.00171 * 2 1 3
5 5 C 1.34781 * 119.99797 * 275.00406 * 4 2 1
6 6 O 1.21683 * 119.99898 * 359.97438 * 5 4 2
7 7 C 1.46797 * 119.99809 * 179.97438 * 5 4 2
8 8 C 1.36407 * 125.84640 * 179.97438 * 7 5 4
9 9 C 1.41278 * 107.03332 * 180.02562 * 8 7 5
10 10 C 1.43198 * 126.45533 * 180.02562 * 9 8 7
11 11 N 8.51093 * 106.01263 * 96.45682 * 2 1 3
12 12 C 1.38183 * 107.08690 * 359.97438 * 9 8 7
13 13 N 1.34428 * 108.38666 * 359.73427 * 12 9 8
14 14 H 0.97000 * 125.40152 * 180.27974 * 13 12 9
15 15 C 1.53005 * 109.47467 * 240.00243 * 2 1 3
16 16 C 1.53935 * 113.73242 * 59.99346 * 15 2 1
17 17 N 1.47962 * 86.30001 * 138.02883 * 16 15 2
18 18 C 1.46897 * 111.00037 * 222.47236 * 17 16 15
19 19 C 1.50703 * 109.46834 * 169.99844 * 18 17 16
20 20 O 1.21290 * 120.00197 * 0.02562 * 19 18 17
21 21 N 1.34779 * 119.99632 * 179.97438 * 19 18 17
22 22 C 1.37098 * 119.99806 * 179.97438 * 21 19 18
23 23 H 1.07999 * 120.00158 * 0.02562 * 22 21 19
24 24 C 1.38951 * 119.99945 * 180.02562 * 22 21 19
25 25 N 1.31412 * 120.00134 * 0.02562 * 24 22 21
26 26 Si 1.86803 * 119.99772 * 180.02562 * 24 22 21
27 27 H 1.48498 * 109.47265 * 90.00191 * 26 24 22
28 28 H 1.48503 * 109.46672 * 209.99798 * 26 24 22
29 29 H 1.48498 * 109.47368 * 329.99774 * 26 24 22
30 30 C 1.48187 * 90.67343 * 335.41160 * 17 16 15
31 31 H 1.08996 * 109.46745 * 300.00063 * 1 2 3
32 32 H 1.08993 * 109.46775 * 60.00140 * 1 2 3
33 33 H 1.08999 * 109.46499 * 179.97438 * 1 2 3
34 34 H 0.96998 * 120.00181 * 94.99922 * 4 2 1
35 35 H 1.08006 * 126.48443 * 359.97438 * 8 7 5
36 36 H 1.08006 * 125.80212 * 180.02562 * 12 9 8
37 37 H 1.09005 * 112.93265 * 288.43395 * 15 2 1
38 38 H 1.09002 * 113.76229 * 252.40280 * 16 15 2
39 39 H 1.09005 * 113.75703 * 23.65805 * 16 15 2
40 40 H 1.08999 * 109.47312 * 289.99731 * 18 17 16
41 41 H 1.08999 * 109.46989 * 50.00663 * 18 17 16
42 42 H 0.97000 * 120.00257 * 0.02562 * 21 19 18
43 43 H 0.96995 * 119.99804 * 179.97438 * 25 24 22
44 44 H 1.09005 * 113.65869 * 270.26633 * 30 17 16
45 45 H 1.09002 * 113.92722 * 138.95266 * 30 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 2.1471 -0.0183 2.3571
6 8 1.8580 1.1625 2.4117
7 6 2.6360 -0.7104 3.5558
8 6 2.8118 -0.1491 4.7865
9 6 3.2949 -1.1660 5.6400
10 6 3.6199 -1.0288 7.0279
11 7 3.8777 -0.9200 8.1288
12 6 3.3935 -2.3181 4.8836
13 7 2.9898 -2.0394 3.6320
14 1 2.9559 -2.6731 2.8983
15 6 2.0401 -0.7212 -1.2493
16 6 1.5823 -0.0739 -2.5687
17 7 2.9602 -0.3120 -3.0523
18 6 3.4654 0.8499 -3.7956
19 6 4.9391 0.6759 -4.0585
20 8 5.5120 -0.3184 -3.6658
21 7 5.6202 1.6248 -4.7310
22 6 6.9610 1.4668 -4.9697
23 1 7.4713 0.5818 -4.6193
24 6 7.6634 2.4453 -5.6626
25 7 7.0426 3.5224 -6.0885
26 14 9.4901 2.2296 -5.9884
27 1 9.6825 1.5268 -7.2824
28 1 10.1430 3.5621 -6.0470
29 1 10.0968 1.4286 -4.8951
30 6 3.4670 -0.3154 -1.6598
31 1 -0.3633 0.5138 0.8900
32 1 -0.3632 0.5138 -0.8900
33 1 -0.3632 -1.0277 -0.0005
34 1 2.2491 -1.6318 1.1526
35 1 2.6190 0.8786 5.0571
36 1 3.7324 -3.2801 5.2388
37 1 1.8824 -1.7991 -1.2116
38 1 0.8245 -0.6493 -3.1005
39 1 1.3262 0.9815 -2.4744
40 1 2.9346 0.9335 -4.7439
41 1 3.3055 1.7543 -3.2086
42 1 5.1620 2.4198 -5.0454
43 1 7.5330 4.2055 -6.5718
44 1 3.7641 0.6698 -1.3001
45 1 4.2156 -1.0830 -1.4637
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001717545581.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:07:28
Heat of formation + Delta-G solvation = 38.783619 kcal
Electronic energy + Delta-G solvation = -28582.177656 eV
Core-core repulsion = 24408.783795 eV
Total energy + Delta-G solvation = -4173.393861 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-42.07488 -40.48349 -39.28090 -37.78255 -36.70527 -35.58200 -33.92502 -32.35449
-31.65718 -31.25507 -30.04108 -29.30106 -26.35174 -25.55746 -24.51163 -23.46786
-23.31969 -21.51714 -20.80384 -20.32649 -19.29057 -18.98768 -17.89529 -17.11580
-16.63778 -16.42596 -16.14430 -15.77636 -15.36910 -15.04970 -14.82994 -14.61511
-14.36431 -14.22136 -14.07716 -13.76633 -13.73112 -13.53815 -13.36574 -13.19802
-13.06083 -12.74617 -12.56676 -12.36698 -12.28610 -11.88576 -11.76584 -11.50350
-11.11067 -11.02993 -10.75035 -10.69608 -10.42045 -10.38112 -10.23525 -9.65890
-9.53709 -9.51056 -8.90421 -8.69297 -8.26453 -7.98877 -6.43931 -3.84888
0.90425 1.32972 2.27631 2.46734 2.67330 2.89358 3.15974 3.24835
3.30197 3.30309 3.77654 3.85145 3.93062 4.16045 4.25810 4.35670
4.39418 4.47548 4.68606 4.87515 4.94762 5.05369 5.12984 5.14124
5.20976 5.32749 5.39084 5.40060 5.48561 5.62800 5.66852 5.70152
5.77272 5.87720 5.89994 5.97241 6.03677 6.11418 6.22677 6.26128
6.56144 6.57923 7.06929 7.14969 7.30654 7.52785 7.77824 8.03033
8.58600 9.15405 9.51520 10.02875 10.73759
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.011342 B = 0.002047 C = 0.001828
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2468.132267 B =13678.508773 C =15316.025884
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.151 3.849
3 H 0.093 0.907
4 N -0.721 5.721
5 C 0.589 3.411
6 O -0.521 6.521
7 C -0.047 4.047
8 C -0.056 4.056
9 C -0.134 4.134
10 C 0.290 3.710
11 N -0.434 5.434
12 C 0.098 3.902
13 N -0.522 5.522
14 H 0.427 0.573
15 C -0.130 4.130
16 C 0.010 3.990
17 N -0.454 5.454
18 C 0.010 3.990
19 C 0.443 3.557
20 O -0.581 6.581
21 N -0.564 5.564
22 C -0.299 4.299
23 H 0.103 0.897
24 C 0.022 3.978
25 N -0.901 5.901
26 Si 0.930 3.070
27 H -0.278 1.278
28 H -0.283 1.283
29 H -0.270 1.270
30 C 0.028 3.972
31 H 0.061 0.939
32 H 0.070 0.930
33 H 0.057 0.943
34 H 0.394 0.606
35 H 0.161 0.839
36 H 0.189 0.811
37 H 0.102 0.898
38 H 0.090 0.910
39 H 0.071 0.929
40 H 0.091 0.909
41 H 0.054 0.946
42 H 0.392 0.608
43 H 0.272 0.728
44 H 0.067 0.933
45 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.128 -10.951 15.534 24.291
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.047 3.953
3 H 0.111 0.889
4 N -0.372 5.372
5 C 0.376 3.624
6 O -0.396 6.396
7 C -0.158 4.158
8 C -0.083 4.083
9 C -0.145 4.145
10 C -0.025 4.025
11 N -0.111 5.111
12 C -0.047 4.047
13 N -0.117 5.117
14 H 0.265 0.735
15 C -0.149 4.149
16 C -0.120 4.120
17 N -0.176 5.176
18 C -0.122 4.122
19 C 0.228 3.772
20 O -0.465 6.465
21 N -0.200 5.200
22 C -0.429 4.429
23 H 0.120 0.880
24 C -0.180 4.180
25 N -0.542 5.542
26 Si 0.757 3.243
27 H -0.204 1.204
28 H -0.209 1.209
29 H -0.194 1.194
30 C -0.101 4.101
31 H 0.080 0.920
32 H 0.089 0.911
33 H 0.076 0.924
34 H 0.228 0.772
35 H 0.178 0.822
36 H 0.206 0.794
37 H 0.121 0.879
38 H 0.109 0.891
39 H 0.089 0.911
40 H 0.109 0.891
41 H 0.072 0.928
42 H 0.225 0.775
43 H 0.082 0.918
44 H 0.085 0.915
45 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -14.361 -10.982 16.757 24.651
hybrid contribution 0.581 0.441 -0.883 1.145
sum -13.780 -10.541 15.875 23.516
Atomic orbital electron populations
1.22149 0.94712 1.02274 1.02870 1.21128 0.94276 0.97414 0.82500
0.88896 1.45928 1.67781 1.13675 1.09801 1.16991 0.77613 0.86279
0.81539 1.90888 1.50001 1.14550 1.84209 1.20108 1.14770 0.84103
0.96852 1.21086 0.98117 0.99447 0.89647 1.15394 1.16423 0.95430
0.87236 1.24626 0.92718 0.93703 0.91491 1.81290 1.10580 1.07358
1.11826 1.22295 0.99659 0.99364 0.83387 1.41773 1.48997 1.09864
1.11063 0.73454 1.23381 0.97609 1.00968 0.92936 1.23962 0.94204
1.00047 0.93737 1.68446 1.01883 1.35701 1.11568 1.22459 0.96711
0.92748 1.00262 1.19677 0.87631 0.85428 0.84429 1.90509 1.69976
1.30355 1.55669 1.41874 1.09575 1.19460 1.49110 1.19685 0.83936
1.06047 1.33227 0.87959 1.25269 1.00583 0.95186 0.96921 1.69609
1.37240 1.09000 1.38372 0.85857 0.81985 0.77512 0.78928 1.20384
1.20901 1.19445 1.23848 0.95469 1.01781 0.88967 0.92000 0.91114
0.92357 0.77216 0.82151 0.79398 0.87937 0.89132 0.91094 0.89120
0.92772 0.77485 0.91842 0.91481 0.88937
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.17 9.29 37.16 0.35 -0.83 16
2 C 0.15 1.27 2.41 -67.93 -0.16 1.11 16
3 H 0.09 1.01 7.37 -51.93 -0.38 0.63 16
4 N -0.72 -5.03 5.07 -55.07 -0.28 -5.31 16
5 C 0.59 5.45 7.76 -12.80 -0.10 5.35 16
6 O -0.52 -6.94 16.52 5.20 0.09 -6.85 16
7 C -0.05 -0.33 6.99 -82.41 -0.58 -0.90 16
8 C -0.06 -0.43 10.54 -39.09 -0.41 -0.84 16
9 C -0.13 -0.89 5.97 -106.84 -0.64 -1.53 16
10 C 0.29 2.61 15.83 -22.48 -0.36 2.25 16
11 N -0.43 -5.04 18.54 41.84 0.78 -4.27 16
12 C 0.10 0.33 11.90 -16.44 -0.20 0.13 16
13 N -0.52 -1.68 5.92 -9.27 -0.05 -1.73 16
14 H 0.43 0.03 8.14 -40.82 -0.33 -0.30 16
15 C -0.13 -1.18 3.50 -89.68 -0.31 -1.50 16
16 C 0.01 0.11 6.59 -2.77 -0.02 0.09 16
17 N -0.45 -6.92 5.95 -238.78 -1.42 -8.35 16
18 C 0.01 0.18 5.31 -4.98 -0.03 0.15 16
19 C 0.44 10.31 7.59 -10.98 -0.08 10.22 16
20 O -0.58 -15.41 15.14 5.55 0.08 -15.33 16
21 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16
22 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16
23 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16
24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16
25 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16
26 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16
27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
29 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16
30 C 0.03 0.39 6.33 -2.65 -0.02 0.37 16
31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.07 0.47 7.43 -51.93 -0.39 0.09 16
33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
34 H 0.39 1.55 7.68 -40.82 -0.31 1.23 16
35 H 0.16 1.27 8.06 -52.48 -0.42 0.84 16
36 H 0.19 -0.02 8.06 -52.48 -0.42 -0.45 16
37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16
38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
39 H 0.07 0.68 7.71 -51.93 -0.40 0.28 16
40 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16
41 H 0.05 0.84 7.69 -51.93 -0.40 0.44 16
42 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16
43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16
44 H 0.07 0.99 7.60 -51.93 -0.39 0.60 16
45 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16
LS Contribution 393.44 15.07 5.93 5.93
Total: -1.00 -36.69 393.44 -7.85 -44.55
By element:
Atomic # 1 Polarization: 13.05 SS G_CDS: -5.82 Total: 7.23 kcal
Atomic # 6 Polarization: 8.92 SS G_CDS: -2.79 Total: 6.12 kcal
Atomic # 7 Polarization: -57.27 SS G_CDS: -0.31 Total: -57.58 kcal
Atomic # 8 Polarization: -22.35 SS G_CDS: 0.17 Total: -22.18 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -36.69 -7.85 -44.55 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717545581.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.332 kcal
(2) G-P(sol) polarization free energy of solvation -36.695 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.637 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.784 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds