Wall clock time and date at job start Wed Apr 1 2020 03:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47204 * 2 1 4 4 N 1.46502 * 109.47004 * 239.99816 * 2 1 3 5 5 C 1.34779 * 119.99654 * 85.00339 * 4 2 1 6 6 O 1.21276 * 120.00346 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99668 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47167 * 179.97438 * 7 5 4 9 9 C 1.34241 * 126.49654 * 264.97751 * 8 7 5 10 10 N 1.36807 * 109.93506 * 180.02562 * 9 8 7 11 11 H 0.97004 * 125.06993 * 179.97438 * 10 9 8 12 12 C 1.37810 * 109.86025 * 0.24311 * 10 9 8 13 13 C 1.39103 * 133.39063 * 180.44324 * 12 10 9 14 14 C 1.37719 * 119.95099 * 179.60309 * 13 12 10 15 15 C 1.39034 * 120.64580 * 359.74273 * 14 13 12 16 16 F 1.35106 * 119.82865 * 179.97438 * 15 14 13 17 17 C 1.37792 * 120.33429 * 359.97438 * 15 14 13 18 18 C 1.39666 * 119.62921 * 0.02562 * 17 15 14 19 19 C 1.53003 * 109.47257 * 120.00203 * 2 1 3 20 20 C 1.53944 * 113.73849 * 281.68265 * 19 2 1 21 21 N 1.47586 * 86.11625 * 222.04476 * 20 19 2 22 22 C 1.36933 * 134.49643 * 204.64418 * 21 20 19 23 23 H 1.08001 * 119.99963 * 179.97438 * 22 21 20 24 24 C 1.38813 * 119.99886 * 359.97438 * 22 21 20 25 25 N 1.31625 * 119.99874 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99987 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47200 * 60.00340 * 26 24 22 28 28 H 1.48509 * 109.47183 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47545 * 300.00265 * 26 24 22 30 30 C 1.47587 * 91.01107 * 24.63713 * 21 20 19 31 31 H 1.09002 * 109.47632 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47205 * 300.02762 * 1 2 3 33 33 H 1.09003 * 109.47393 * 60.03122 * 1 2 3 34 34 H 0.97001 * 120.00434 * 265.00377 * 4 2 1 35 35 H 1.08999 * 109.47090 * 60.00185 * 7 5 4 36 36 H 1.09001 * 109.47426 * 299.99862 * 7 5 4 37 37 H 1.08006 * 125.03532 * 0.04356 * 9 8 7 38 38 H 1.07997 * 120.02476 * 359.36438 * 13 12 10 39 39 H 1.07996 * 119.67255 * 179.71403 * 14 13 12 40 40 H 1.08006 * 120.18050 * 180.02562 * 17 15 14 41 41 H 1.09004 * 112.94316 * 53.40761 * 19 2 1 42 42 H 1.09004 * 113.77118 * 336.34000 * 20 19 2 43 43 H 1.08994 * 113.77357 * 107.74846 * 20 19 2 44 44 H 0.97003 * 119.99591 * 179.97438 * 25 24 22 45 45 H 1.09000 * 113.77166 * 221.05773 * 30 21 20 46 46 H 1.09004 * 113.86825 * 89.67955 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6498 -0.7286 -3.5874 8 6 2.6999 0.2396 -4.7412 9 6 1.7493 0.4234 -5.6710 10 7 2.1462 1.3844 -6.5603 11 1 1.6264 1.6890 -7.3205 12 6 3.3971 1.8507 -6.2183 13 6 4.2416 2.8109 -6.7658 14 6 5.4612 3.0683 -6.1802 15 6 5.8588 2.3804 -5.0393 16 9 7.0590 2.6457 -4.4786 17 6 5.0349 1.4294 -4.4775 18 6 3.7952 1.1582 -5.0609 19 6 2.0400 -0.7213 1.2492 20 6 1.9775 0.1341 2.5276 21 7 3.3098 -0.4179 2.8417 22 6 4.0194 -0.6145 3.9962 23 1 5.0064 -1.0509 3.9557 24 6 3.4700 -0.2529 5.2186 25 7 2.2668 0.2784 5.2680 26 14 4.4382 -0.5205 6.7935 27 1 5.7082 0.2465 6.7301 28 1 3.6356 -0.0550 7.9531 29 1 4.7402 -1.9660 6.9494 30 6 3.5700 -0.6731 1.4115 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5143 0.8897 33 1 -0.3634 0.5134 -0.8903 34 1 2.2489 -1.6318 -1.1527 35 1 1.9776 -1.5508 -3.8325 36 1 3.6492 -1.1204 -3.3979 37 1 0.8100 -0.1083 -5.7111 38 1 3.9427 3.3514 -7.6518 39 1 6.1153 3.8114 -6.6117 40 1 5.3460 0.8968 -3.5909 41 1 1.6175 -1.7193 1.3659 42 1 1.9803 1.2076 2.3386 43 1 1.1988 -0.1743 3.2251 44 1 1.8827 0.5308 6.1223 45 1 4.0626 -1.6259 1.2177 46 1 4.0408 0.1622 0.8930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717559870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:41 Heat of formation + Delta-G solvation = 27.075755 kcal Electronic energy + Delta-G solvation = -29240.751156 eV Core-core repulsion = 25046.929642 eV Total energy + Delta-G solvation = -4193.821514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.69 seconds Orbital eigenvalues (eV) -48.83884 -41.53523 -39.61253 -37.97539 -36.81489 -34.71327 -33.31408 -32.12905 -30.96920 -29.97901 -29.13404 -27.46134 -27.21057 -24.72138 -23.95050 -23.32156 -22.13555 -21.64852 -20.36912 -19.72658 -18.96989 -18.21084 -17.43096 -16.85781 -16.68699 -16.44941 -15.83196 -15.60713 -15.51078 -15.01406 -14.75330 -14.52393 -14.11953 -14.05672 -13.76672 -13.48017 -13.41302 -13.19851 -13.11630 -12.93599 -12.63987 -12.28932 -12.10738 -11.76051 -11.54325 -11.48543 -11.35813 -11.17308 -11.02088 -10.83717 -10.64215 -10.32056 -10.03736 -9.93194 -9.77674 -9.49322 -9.34713 -8.77295 -8.72276 -8.35924 -7.87988 -6.83715 -5.73380 -3.05336 0.77425 1.22425 2.34346 2.82471 2.86624 3.41153 3.42193 3.46056 3.47301 3.62257 4.13289 4.38628 4.48606 4.56133 4.66422 4.84713 4.97480 5.00677 5.10960 5.19339 5.26661 5.33584 5.38277 5.45066 5.54514 5.58922 5.60289 5.71308 5.80989 5.87028 6.01195 6.05539 6.06358 6.12861 6.33677 6.40115 6.43476 6.47309 6.49266 6.65823 6.69493 6.86086 6.89061 7.22880 7.26364 7.40812 7.59590 7.76902 8.02160 8.48367 9.08410 9.74446 10.64262 11.43822 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.002320 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.044303 B =12064.040704 C =13523.436304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.151 3.849 3 H 0.085 0.915 4 N -0.722 5.722 5 C 0.509 3.491 6 O -0.534 6.534 7 C -0.068 4.068 8 C -0.148 4.148 9 C 0.071 3.929 10 N -0.592 5.592 11 H 0.417 0.583 12 C 0.086 3.914 13 C -0.101 4.101 14 C -0.133 4.133 15 C 0.070 3.930 16 F -0.142 7.142 17 C -0.101 4.101 18 C -0.064 4.064 19 C -0.146 4.146 20 C 0.175 3.825 21 N -0.612 5.612 22 C -0.223 4.223 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.922 5.922 26 Si 0.912 3.088 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.125 3.875 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.397 0.603 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.172 0.828 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.088 0.912 42 H 0.027 0.973 43 H 0.074 0.926 44 H 0.254 0.746 45 H 0.040 0.960 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 -1.476 -28.429 28.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.103 0.897 4 N -0.373 5.373 5 C 0.295 3.705 6 O -0.410 6.410 7 C -0.109 4.109 8 C -0.155 4.155 9 C -0.056 4.056 10 N -0.195 5.195 11 H 0.254 0.746 12 C -0.021 4.021 13 C -0.122 4.122 14 C -0.153 4.153 15 C 0.050 3.950 16 F -0.121 7.121 17 C -0.121 4.121 18 C -0.069 4.069 19 C -0.166 4.166 20 C 0.049 3.951 21 N -0.338 5.338 22 C -0.351 4.351 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.569 5.569 26 Si 0.742 3.258 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.211 1.211 30 C -0.001 4.001 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.231 0.769 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.189 0.811 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.106 0.894 42 H 0.045 0.955 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.365 -0.566 -28.162 28.267 hybrid contribution 0.599 -0.217 0.748 0.982 sum -1.766 -0.783 -27.414 27.482 Atomic orbital electron populations 1.22094 0.95663 1.01608 1.02113 1.21065 0.93613 0.97451 0.83250 0.89661 1.46158 1.67369 1.13977 1.09813 1.20594 0.77978 0.87563 0.84408 1.90710 1.49464 1.15897 1.84906 1.19982 1.03660 0.96838 0.90400 1.19515 0.94697 1.02495 0.98819 1.21573 0.99186 0.93445 0.91370 1.41646 1.15348 1.35270 1.27260 0.74608 1.18204 0.87377 0.99146 0.97362 1.19780 0.93268 0.98011 1.01134 1.20727 0.97183 1.01489 0.95933 1.17293 0.82793 0.99639 0.95300 1.91493 1.42707 1.93232 1.84690 1.20433 0.92899 0.98214 1.00508 1.18679 0.94348 0.98444 0.95402 1.23837 0.97530 1.00651 0.94608 1.22189 0.89631 0.93843 0.89408 1.45944 1.16455 1.71759 0.99664 1.18980 0.98454 1.34763 0.82854 0.90376 1.24781 0.97084 1.01165 0.97484 1.69804 1.15356 1.47308 1.24459 0.86204 0.78903 0.77807 0.82873 1.21215 1.21562 1.21114 1.22533 0.93133 0.97630 0.86771 0.92855 0.91279 0.92954 0.76904 0.88207 0.88160 0.81108 0.85351 0.84570 0.84808 0.89397 0.95534 0.90760 0.93607 0.94180 0.95039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.44 37.15 0.35 -1.84 16 2 C 0.15 2.32 2.29 -67.93 -0.16 2.17 16 3 H 0.09 1.56 7.48 -51.93 -0.39 1.17 16 4 N -0.72 -8.89 4.94 -53.81 -0.27 -9.15 16 5 C 0.51 6.61 7.79 -10.98 -0.09 6.53 16 6 O -0.53 -9.32 15.70 5.56 0.09 -9.23 16 7 C -0.07 -0.61 6.23 -29.03 -0.18 -0.80 16 8 C -0.15 -1.55 4.81 -102.71 -0.49 -2.04 16 9 C 0.07 0.58 11.73 -16.74 -0.20 0.38 16 10 N -0.59 -4.49 6.07 -10.64 -0.06 -4.55 16 11 H 0.42 1.73 8.96 -40.82 -0.37 1.36 16 12 C 0.09 0.87 7.27 -83.96 -0.61 0.26 16 13 C -0.10 -0.89 10.06 -39.45 -0.40 -1.29 16 14 C -0.13 -1.31 9.99 -39.48 -0.39 -1.70 16 15 C 0.07 0.85 7.29 -39.45 -0.29 0.56 16 16 F -0.14 -1.87 17.26 2.25 0.04 -1.83 16 17 C -0.10 -1.27 10.07 -39.21 -0.40 -1.66 16 18 C -0.06 -0.77 6.35 -105.14 -0.67 -1.43 16 19 C -0.15 -2.61 3.36 -89.70 -0.30 -2.92 16 20 C 0.18 4.11 6.98 -2.97 -0.02 4.09 16 21 N -0.61 -15.90 3.70 -177.90 -0.66 -16.56 16 22 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 23 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 25 N -0.92 -27.64 11.38 55.49 0.63 -27.01 16 26 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 30 C 0.13 2.55 8.37 -2.98 -0.02 2.53 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 3.82 8.60 -40.82 -0.35 3.47 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.03 0.65 8.03 -51.93 -0.42 0.24 16 43 H 0.07 1.91 7.15 -51.93 -0.37 1.54 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 391.81 15.07 5.90 5.90 Total: -1.00 -36.44 391.81 -9.98 -46.42 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.51 Total: 2.63 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -4.12 Total: -4.03 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.36 Total: -57.27 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.44 -9.98 -46.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717559870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.493 kcal (2) G-P(sol) polarization free energy of solvation -36.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.69 seconds