Wall clock time and date at job start Wed Apr 1 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47204 * 2 1 4 4 N 1.46502 * 109.47004 * 239.99816 * 2 1 3 5 5 C 1.34779 * 119.99654 * 85.00339 * 4 2 1 6 6 O 1.21276 * 120.00346 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99668 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47167 * 179.97438 * 7 5 4 9 9 C 1.34241 * 126.49654 * 264.97751 * 8 7 5 10 10 N 1.36807 * 109.93506 * 180.02562 * 9 8 7 11 11 H 0.97004 * 125.06993 * 179.97438 * 10 9 8 12 12 C 1.37810 * 109.86025 * 0.24311 * 10 9 8 13 13 C 1.39103 * 133.39063 * 180.44324 * 12 10 9 14 14 C 1.37719 * 119.95099 * 179.60309 * 13 12 10 15 15 C 1.39034 * 120.64580 * 359.74273 * 14 13 12 16 16 F 1.35106 * 119.82865 * 179.97438 * 15 14 13 17 17 C 1.37792 * 120.33429 * 359.97438 * 15 14 13 18 18 C 1.39666 * 119.62921 * 0.02562 * 17 15 14 19 19 C 1.53003 * 109.47257 * 120.00203 * 2 1 3 20 20 C 1.53944 * 113.73849 * 281.68265 * 19 2 1 21 21 N 1.47586 * 86.11625 * 222.04476 * 20 19 2 22 22 C 1.36933 * 134.49643 * 204.64418 * 21 20 19 23 23 H 1.08001 * 119.99963 * 179.97438 * 22 21 20 24 24 C 1.38813 * 119.99886 * 359.97438 * 22 21 20 25 25 N 1.31625 * 119.99874 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99987 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47200 * 60.00340 * 26 24 22 28 28 H 1.48509 * 109.47183 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47545 * 300.00265 * 26 24 22 30 30 C 1.47587 * 91.01107 * 24.63713 * 21 20 19 31 31 H 1.09002 * 109.47632 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47205 * 300.02762 * 1 2 3 33 33 H 1.09003 * 109.47393 * 60.03122 * 1 2 3 34 34 H 0.97001 * 120.00434 * 265.00377 * 4 2 1 35 35 H 1.08999 * 109.47090 * 60.00185 * 7 5 4 36 36 H 1.09001 * 109.47426 * 299.99862 * 7 5 4 37 37 H 1.08006 * 125.03532 * 0.04356 * 9 8 7 38 38 H 1.07997 * 120.02476 * 359.36438 * 13 12 10 39 39 H 1.07996 * 119.67255 * 179.71403 * 14 13 12 40 40 H 1.08006 * 120.18050 * 180.02562 * 17 15 14 41 41 H 1.09004 * 112.94316 * 53.40761 * 19 2 1 42 42 H 1.09004 * 113.77118 * 336.34000 * 20 19 2 43 43 H 1.08994 * 113.77357 * 107.74846 * 20 19 2 44 44 H 0.97003 * 119.99591 * 179.97438 * 25 24 22 45 45 H 1.09000 * 113.77166 * 221.05773 * 30 21 20 46 46 H 1.09004 * 113.86825 * 89.67955 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6498 -0.7286 -3.5874 8 6 2.6999 0.2396 -4.7412 9 6 1.7493 0.4234 -5.6710 10 7 2.1462 1.3844 -6.5603 11 1 1.6264 1.6890 -7.3205 12 6 3.3971 1.8507 -6.2183 13 6 4.2416 2.8109 -6.7658 14 6 5.4612 3.0683 -6.1802 15 6 5.8588 2.3804 -5.0393 16 9 7.0590 2.6457 -4.4786 17 6 5.0349 1.4294 -4.4775 18 6 3.7952 1.1582 -5.0609 19 6 2.0400 -0.7213 1.2492 20 6 1.9775 0.1341 2.5276 21 7 3.3098 -0.4179 2.8417 22 6 4.0194 -0.6145 3.9962 23 1 5.0064 -1.0509 3.9557 24 6 3.4700 -0.2529 5.2186 25 7 2.2668 0.2784 5.2680 26 14 4.4382 -0.5205 6.7935 27 1 5.7082 0.2465 6.7301 28 1 3.6356 -0.0550 7.9531 29 1 4.7402 -1.9660 6.9494 30 6 3.5700 -0.6731 1.4115 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5143 0.8897 33 1 -0.3634 0.5134 -0.8903 34 1 2.2489 -1.6318 -1.1527 35 1 1.9776 -1.5508 -3.8325 36 1 3.6492 -1.1204 -3.3979 37 1 0.8100 -0.1083 -5.7111 38 1 3.9427 3.3514 -7.6518 39 1 6.1153 3.8114 -6.6117 40 1 5.3460 0.8968 -3.5909 41 1 1.6175 -1.7193 1.3659 42 1 1.9803 1.2076 2.3386 43 1 1.1988 -0.1743 3.2251 44 1 1.8827 0.5308 6.1223 45 1 4.0626 -1.6259 1.2177 46 1 4.0408 0.1622 0.8930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717559870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:38 Heat of formation + Delta-G solvation = 3.281975 kcal Electronic energy + Delta-G solvation = -29241.782932 eV Core-core repulsion = 25046.929642 eV Total energy + Delta-G solvation = -4194.853289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.79056 -42.22919 -40.83008 -39.53089 -37.54732 -36.08114 -34.18032 -34.01014 -32.08414 -30.94124 -29.87392 -29.33093 -28.00285 -26.49341 -25.66119 -24.05945 -23.09483 -22.89982 -21.49222 -20.96441 -20.15600 -18.95781 -18.76000 -18.25214 -17.81300 -17.25067 -17.11842 -16.80746 -16.53998 -16.32721 -15.92114 -15.79702 -15.44895 -15.11470 -14.87538 -14.74002 -14.56526 -14.22219 -14.04316 -13.83705 -13.75476 -13.41006 -13.35290 -13.24628 -13.06748 -12.92503 -12.64948 -12.57094 -12.37466 -12.24739 -12.00699 -11.79184 -11.74965 -11.54065 -11.20035 -10.86769 -10.85599 -10.49977 -9.90474 -9.10934 -8.92578 -8.59848 -7.90876 -5.24674 0.02720 0.42156 1.44439 1.48336 1.54385 1.63706 1.87509 2.23759 2.45019 2.48120 2.76775 3.29204 3.34602 3.40780 3.67904 3.74239 3.87216 4.00400 4.04321 4.12143 4.24680 4.31498 4.35134 4.46683 4.52905 4.60626 4.70381 4.74743 4.78514 4.82028 4.87462 4.87688 4.92129 4.99109 5.10255 5.16814 5.24297 5.24992 5.32975 5.34256 5.53797 5.64410 5.67623 5.70312 5.75246 5.94271 6.11732 6.73252 6.80686 6.91791 7.50696 7.60378 8.56582 9.25930 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.002320 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.044303 B =12064.040704 C =13523.436304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.163 3.837 3 H 0.051 0.949 4 N -0.711 5.711 5 C 0.508 3.492 6 O -0.583 6.583 7 C -0.057 4.057 8 C -0.185 4.185 9 C 0.089 3.911 10 N -0.579 5.579 11 H 0.435 0.565 12 C 0.072 3.928 13 C -0.090 4.090 14 C -0.142 4.142 15 C 0.046 3.954 16 F -0.156 7.156 17 C -0.128 4.128 18 C -0.091 4.091 19 C -0.106 4.106 20 C 0.169 3.831 21 N -0.644 5.644 22 C -0.238 4.238 23 H 0.083 0.917 24 C -0.069 4.069 25 N -0.954 5.954 26 Si 0.980 3.020 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.272 1.272 30 C 0.127 3.873 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.415 0.585 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.210 0.790 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.006 0.994 43 H 0.047 0.953 44 H 0.249 0.751 45 H 0.064 0.936 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -3.178 -30.974 31.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.364 5.364 5 C 0.296 3.704 6 O -0.462 6.462 7 C -0.097 4.097 8 C -0.192 4.192 9 C -0.039 4.039 10 N -0.183 5.183 11 H 0.275 0.725 12 C -0.036 4.036 13 C -0.110 4.110 14 C -0.162 4.162 15 C 0.026 3.974 16 F -0.135 7.135 17 C -0.147 4.147 18 C -0.096 4.096 19 C -0.126 4.126 20 C 0.043 3.957 21 N -0.370 5.370 22 C -0.367 4.367 23 H 0.101 0.899 24 C -0.262 4.262 25 N -0.603 5.603 26 Si 0.808 3.192 27 H -0.207 1.207 28 H -0.219 1.219 29 H -0.198 1.198 30 C 0.002 3.998 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.252 0.748 35 H 0.159 0.841 36 H 0.128 0.872 37 H 0.227 0.773 38 H 0.182 0.818 39 H 0.175 0.825 40 H 0.141 0.859 41 H 0.126 0.874 42 H 0.023 0.977 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.193 -2.308 -30.767 31.018 hybrid contribution 0.839 0.349 1.452 1.713 sum -2.353 -1.959 -29.315 29.475 Atomic orbital electron populations 1.22009 0.94141 1.02967 1.01558 1.20644 0.94636 0.95528 0.83499 0.93120 1.45961 1.67049 1.14681 1.08668 1.21360 0.76701 0.87033 0.85276 1.90692 1.51612 1.18220 1.85677 1.20001 1.04901 0.97080 0.87738 1.19802 0.95180 1.03766 1.00459 1.22189 0.99512 0.92286 0.89926 1.41702 1.14473 1.34551 1.27553 0.72478 1.18449 0.88523 0.99417 0.97178 1.20177 0.92249 0.97092 1.01528 1.21000 0.98150 1.01769 0.95269 1.17651 0.82569 1.00617 0.96532 1.91445 1.43531 1.93414 1.85112 1.20493 0.94055 0.99242 1.00931 1.19042 0.94557 0.99561 0.96415 1.23434 0.95752 1.00337 0.93057 1.22097 0.88253 0.93500 0.91822 1.46397 1.17426 1.71971 1.01236 1.19411 0.98843 1.34183 0.84231 0.89933 1.25663 0.98191 1.01539 1.00769 1.70004 1.16908 1.48654 1.24717 0.85135 0.77362 0.78194 0.78535 1.20711 1.21937 1.19755 1.22669 0.95080 0.98313 0.83720 0.90453 0.92495 0.92900 0.74834 0.84123 0.87192 0.77350 0.81806 0.82469 0.85945 0.87378 0.97654 0.93492 0.94213 0.91815 0.95545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.44 71.98 0.68 -3.30 16 2 C 0.16 4.92 2.29 44.99 0.10 5.03 16 3 H 0.05 1.92 7.48 -2.39 -0.02 1.90 16 4 N -0.71 -16.16 4.94 -442.54 -2.19 -18.35 16 5 C 0.51 12.50 7.79 87.66 0.68 13.18 16 6 O -0.58 -20.33 15.70 -3.02 -0.05 -20.38 16 7 C -0.06 -0.89 6.23 29.10 0.18 -0.71 16 8 C -0.18 -3.52 4.81 -18.63 -0.09 -3.61 16 9 C 0.09 1.14 11.73 83.00 0.97 2.12 16 10 N -0.58 -7.03 6.07 -187.58 -1.14 -8.17 16 11 H 0.43 2.01 8.96 -92.71 -0.83 1.18 16 12 C 0.07 1.34 7.27 38.99 0.28 1.63 16 13 C -0.09 -1.42 10.06 22.35 0.22 -1.20 16 14 C -0.14 -2.71 9.99 22.34 0.22 -2.48 16 15 C 0.05 1.18 7.29 22.36 0.16 1.34 16 16 F -0.16 -4.36 17.26 44.97 0.78 -3.58 16 17 C -0.13 -3.37 10.07 22.51 0.23 -3.15 16 18 C -0.09 -2.14 6.35 -20.20 -0.13 -2.27 16 19 C -0.11 -3.72 3.36 -10.14 -0.03 -3.76 16 20 C 0.17 8.22 6.98 86.48 0.60 8.82 16 21 N -0.64 -33.97 3.70 -716.75 -2.65 -36.62 16 22 C -0.24 -13.76 10.70 84.03 0.90 -12.86 16 23 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 24 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 25 N -0.95 -58.87 11.38 21.65 0.25 -58.62 16 26 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 29 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 30 C 0.13 5.11 8.37 86.48 0.72 5.84 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.66 8.09 -2.39 -0.02 1.64 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.41 6.64 8.60 -92.71 -0.80 5.84 16 35 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.21 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 41 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 42 H 0.01 0.29 8.03 -2.38 -0.02 0.27 16 43 H 0.05 2.52 7.15 -2.39 -0.02 2.50 16 44 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 45 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.03 1.11 8.10 -2.38 -0.02 1.09 16 Total: -1.00 -83.81 391.81 2.60 -81.20 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.60 Total: 14.76 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 6.18 Total: 1.06 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -5.73 Total: -121.76 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.38 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -83.81 2.60 -81.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717559870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.484 kcal (2) G-P(sol) polarization free energy of solvation -83.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds