Wall clock time and date at job start Wed Apr 1 2020 03:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47220 * 2 1 4 4 N 1.46498 * 109.46928 * 119.99199 * 2 1 3 5 5 C 1.36940 * 120.00559 * 275.27621 * 4 2 1 6 6 H 1.08003 * 119.99436 * 359.73116 * 5 4 2 7 7 C 1.38812 * 120.00451 * 179.72327 * 5 4 2 8 8 N 1.31619 * 119.99756 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99823 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47658 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46984 * 120.00036 * 9 7 5 12 12 H 1.48501 * 109.47230 * 240.00022 * 9 7 5 13 13 C 1.52995 * 109.47548 * 239.99500 * 2 1 3 14 14 H 1.09006 * 110.88607 * 299.04829 * 13 2 1 15 15 C 1.55155 * 111.00633 * 175.16453 * 13 2 1 16 16 C 1.54322 * 102.94146 * 206.42217 * 15 13 2 17 17 N 1.47015 * 107.27113 * 22.19675 * 16 15 13 18 18 C 1.34784 * 125.64621 * 181.10000 * 17 16 15 19 19 O 1.21569 * 119.99886 * 185.08125 * 18 17 16 20 20 C 1.47675 * 119.99922 * 5.07590 * 18 17 16 21 21 C 1.39914 * 120.38765 * 172.22299 * 20 18 17 22 22 N 1.31442 * 121.13751 * 180.02562 * 21 20 18 23 23 C 1.32466 * 121.81180 * 359.97438 * 22 21 20 24 24 N 1.37877 * 133.44653 * 179.97438 * 23 22 21 25 25 H 0.96993 * 126.25379 * 0.02562 * 24 23 22 26 26 C 1.36518 * 107.49886 * 180.02562 * 24 23 22 27 27 O 1.35264 * 125.02748 * 179.97438 * 26 24 23 28 28 N 1.30729 * 109.95305 * 0.02562 * 26 24 23 29 29 C 1.35893 * 109.39755 * 359.97438 * 28 26 24 30 30 C 1.39410 * 133.63538 * 180.28777 * 29 28 26 31 31 C 1.47461 * 108.72590 * 1.01997 * 17 16 15 32 32 H 1.09001 * 109.47125 * 64.95777 * 1 2 3 33 33 H 1.09002 * 109.47100 * 184.95088 * 1 2 3 34 34 H 1.08992 * 109.47435 * 304.95237 * 1 2 3 35 35 H 0.97001 * 119.99780 * 95.00312 * 4 2 1 36 36 H 0.97001 * 119.99473 * 179.97438 * 8 7 5 37 37 H 1.08994 * 110.72246 * 324.79090 * 15 13 2 38 38 H 1.09003 * 110.72042 * 87.88462 * 15 13 2 39 39 H 1.09012 * 109.87824 * 141.61328 * 16 15 13 40 40 H 1.09005 * 109.88335 * 262.61549 * 16 15 13 41 41 H 1.08000 * 119.42888 * 0.02562 * 21 20 18 42 42 H 0.96701 * 114.00034 * 90.00394 * 27 26 24 43 43 H 1.08005 * 120.97024 * 359.94323 * 30 29 28 44 44 H 1.08998 * 110.41103 * 217.08617 * 31 17 16 45 45 H 1.09003 * 110.34755 * 94.74489 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6904 1.1963 5 6 2.1437 -0.0086 2.3772 6 1 1.8868 1.0393 2.4256 7 6 2.6009 -0.6643 3.5121 8 7 2.9144 -1.9412 3.4530 9 14 2.7713 0.2657 5.1231 10 1 2.3571 1.6780 4.9257 11 1 1.9056 -0.3642 6.1522 12 1 4.1860 0.2225 5.5724 13 6 2.0401 -0.7213 -1.2491 14 1 1.7035 -1.7580 -1.2639 15 6 3.5862 -0.6372 -1.3475 16 6 3.8431 -0.7586 -2.8644 17 7 2.6047 -0.3615 -3.5500 18 6 2.4140 -0.3515 -4.8842 19 8 1.3776 0.0841 -5.3469 20 6 3.4641 -0.8696 -5.7840 21 6 3.2148 -1.0144 -7.1531 22 7 4.1385 -1.4745 -7.9673 23 6 5.3417 -1.8203 -7.5341 24 7 6.4665 -2.3184 -8.1566 25 1 6.5605 -2.5118 -9.1025 26 6 7.4239 -2.4899 -7.1987 27 8 8.6708 -2.9637 -7.4232 28 7 6.9571 -2.1296 -6.0319 29 6 5.6737 -1.7052 -6.1708 30 6 4.7203 -1.2161 -5.2789 31 6 1.6047 0.0223 -2.5365 32 1 -0.3633 0.4350 -0.9311 33 1 -0.3633 -1.0238 0.0887 34 1 -0.3634 0.5887 0.8422 35 1 2.2490 -1.6316 1.1528 36 1 3.2342 -2.3993 4.2460 37 1 3.9451 0.3207 -0.9710 38 1 4.0525 -1.4613 -0.8075 39 1 4.6576 -0.0956 -3.1566 40 1 4.0953 -1.7887 -3.1164 41 1 2.2467 -0.7435 -7.5478 42 1 9.3210 -2.2780 -7.6285 43 1 4.9446 -1.1119 -4.2276 44 1 0.6097 -0.3006 -2.8429 45 1 1.6220 1.1003 -2.3761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724531788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:08 Heat of formation + Delta-G solvation = 55.497333 kcal Electronic energy + Delta-G solvation = -29470.669422 eV Core-core repulsion = 25298.000322 eV Total energy + Delta-G solvation = -4172.669100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -42.88208 -40.54137 -39.05301 -37.91272 -37.18692 -35.42929 -34.26131 -32.69675 -31.79445 -30.54200 -29.76333 -29.28892 -27.54406 -25.40947 -24.30240 -23.85913 -22.80328 -22.46005 -21.47732 -20.07521 -19.81199 -19.66472 -18.88714 -17.63969 -17.21125 -16.97972 -16.52410 -16.32752 -15.91007 -15.67704 -14.95962 -14.84074 -14.26907 -14.12930 -13.85379 -13.64769 -13.40468 -13.19833 -12.99399 -12.74883 -12.65271 -12.41868 -12.38070 -12.11065 -11.70433 -11.59936 -11.43759 -11.19077 -10.90751 -10.74419 -10.60468 -10.41613 -10.28010 -10.19074 -9.85327 -9.65745 -9.58189 -9.39030 -8.97569 -8.93147 -8.68284 -6.97692 -5.78177 -3.06582 0.19916 0.40364 1.56884 2.04945 2.62751 2.78424 3.04932 3.42308 3.47764 3.48621 3.50342 3.75731 4.11976 4.25700 4.43479 4.44746 4.57120 4.68175 4.82023 4.88970 5.03399 5.22177 5.23752 5.34921 5.45724 5.53284 5.58803 5.63661 5.83770 5.85436 5.92585 5.95471 6.02424 6.03546 6.18130 6.19380 6.35768 6.42842 6.56186 6.62204 6.85946 6.88144 7.04615 7.08768 7.30669 7.41989 7.69918 7.98781 8.40348 9.52026 10.08827 10.43625 11.44469 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.002296 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.568943 B =12192.324971 C =13805.344733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.103 4.103 14 H 0.083 0.917 15 C -0.118 4.118 16 C 0.082 3.918 17 N -0.607 5.607 18 C 0.582 3.418 19 O -0.536 6.536 20 C -0.187 4.187 21 C 0.200 3.800 22 N -0.485 5.485 23 C 0.266 3.734 24 N -0.588 5.588 25 H 0.429 0.571 26 C 0.465 3.535 27 O -0.436 6.436 28 N -0.466 5.466 29 C 0.005 3.995 30 C -0.014 4.014 31 C 0.115 3.885 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.183 0.817 42 H 0.415 0.585 43 H 0.183 0.817 44 H 0.080 0.920 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.378 0.606 -25.211 26.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.123 4.123 14 H 0.101 0.899 15 C -0.155 4.155 16 C -0.040 4.040 17 N -0.340 5.340 18 C 0.371 3.629 19 O -0.415 6.415 20 C -0.195 4.195 21 C 0.032 3.968 22 N -0.197 5.197 23 C 0.030 3.970 24 N -0.215 5.215 25 H 0.270 0.730 26 C 0.160 3.840 27 O -0.237 6.237 28 N -0.197 5.197 29 C -0.115 4.115 30 C -0.040 4.040 31 C -0.007 4.007 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.200 0.800 42 H 0.274 0.726 43 H 0.200 0.800 44 H 0.099 0.901 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.055 0.260 -25.367 26.616 hybrid contribution 0.531 0.338 0.360 0.725 sum 8.586 0.598 -25.006 26.446 Atomic orbital electron populations 1.22507 0.99208 1.01309 0.99818 1.20128 0.91813 0.95164 0.85384 0.93207 1.42379 1.78166 1.10729 1.05049 1.19255 1.36388 0.93857 0.87128 0.91180 1.24715 1.02304 0.95949 0.97969 1.69664 1.51135 1.08608 1.28686 0.86160 0.77262 0.78808 0.84215 1.20605 1.21974 1.21932 1.22683 0.95043 1.00487 0.94077 0.89907 1.22645 0.96593 1.04521 0.91789 1.22701 0.86789 0.99905 0.94616 1.48437 1.15579 1.65203 1.04748 1.17409 0.86204 0.78774 0.80545 1.90796 1.28170 1.47395 1.75126 1.20685 0.95049 1.07674 0.96116 1.22796 0.96741 0.89647 0.87652 1.66517 0.98850 1.15041 1.39306 1.18826 0.88711 0.98927 0.90564 1.43039 1.10866 1.55577 1.12020 0.73042 1.20189 0.84834 0.96066 0.82956 1.84870 1.13032 1.35339 1.90500 1.70767 1.09287 1.18480 1.21133 1.19381 0.92946 1.06375 0.92761 1.22493 0.89355 0.89898 1.02259 1.22397 0.92070 0.99747 0.86479 0.94291 0.93296 0.92886 0.78275 0.93604 0.89934 0.89092 0.90500 0.90430 0.79997 0.72613 0.80028 0.90141 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.38 37.16 0.35 -2.52 16 2 C 0.19 3.33 2.40 -67.93 -0.16 3.17 16 3 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 4 N -0.72 -16.69 4.90 -53.43 -0.26 -16.95 16 5 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 6 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.21 13.06 55.49 0.72 -26.49 16 9 Si 0.90 21.86 29.55 -169.99 -5.02 16.83 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 C -0.10 -1.50 2.64 -88.47 -0.23 -1.73 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.12 -1.57 6.21 -24.90 -0.15 -1.73 16 16 C 0.08 0.90 4.87 -3.07 -0.01 0.88 16 17 N -0.61 -7.65 3.33 -172.65 -0.57 -8.22 16 18 C 0.58 7.74 7.80 -12.40 -0.10 7.64 16 19 O -0.54 -8.52 16.68 5.30 0.09 -8.43 16 20 C -0.19 -2.13 5.88 -104.85 -0.62 -2.75 16 21 C 0.20 2.15 10.74 -17.09 -0.18 1.97 16 22 N -0.48 -5.30 10.36 -11.92 -0.12 -5.42 16 23 C 0.27 2.80 8.45 -155.42 -1.31 1.48 16 24 N -0.59 -4.32 6.23 -13.35 -0.08 -4.41 16 25 H 0.43 1.78 8.96 -40.82 -0.37 1.42 16 26 C 0.47 3.78 9.39 -88.82 -0.83 2.95 16 27 O -0.44 -2.18 13.63 -17.49 -0.24 -2.42 16 28 N -0.47 -5.20 11.32 -12.21 -0.14 -5.34 16 29 C 0.01 0.06 7.22 -84.67 -0.61 -0.55 16 30 C -0.01 -0.15 8.71 -38.58 -0.34 -0.48 16 31 C 0.12 1.53 5.36 -2.51 -0.01 1.52 16 32 H 0.04 0.56 7.09 -51.93 -0.37 0.19 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.38 9.48 7.80 -40.82 -0.32 9.16 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.08 1.15 8.03 -51.93 -0.42 0.74 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.08 0.72 6.79 -51.92 -0.35 0.37 16 40 H 0.08 0.78 6.68 -51.93 -0.35 0.43 16 41 H 0.18 1.70 7.66 -52.49 -0.40 1.30 16 42 H 0.41 -0.26 9.06 45.56 0.41 0.15 16 43 H 0.18 1.76 2.92 -53.77 -0.16 1.61 16 44 H 0.08 1.10 7.88 -51.93 -0.41 0.69 16 45 H 0.07 0.96 8.04 -51.93 -0.42 0.55 16 LS Contribution 372.55 15.07 5.61 5.61 Total: -1.00 -34.50 372.55 -9.28 -43.79 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.80 Total: 8.41 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -4.47 Total: 3.03 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -0.46 Total: -66.82 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.15 Total: -10.85 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.50 -9.28 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724531788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.283 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds