Wall clock time and date at job start Wed Apr 1 2020 03:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47220 * 2 1 4 4 N 1.46498 * 109.46928 * 119.99199 * 2 1 3 5 5 C 1.36940 * 120.00559 * 275.27621 * 4 2 1 6 6 H 1.08003 * 119.99436 * 359.73116 * 5 4 2 7 7 C 1.38812 * 120.00451 * 179.72327 * 5 4 2 8 8 N 1.31619 * 119.99756 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99823 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47658 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46984 * 120.00036 * 9 7 5 12 12 H 1.48501 * 109.47230 * 240.00022 * 9 7 5 13 13 C 1.52995 * 109.47548 * 239.99500 * 2 1 3 14 14 H 1.09006 * 110.88607 * 299.04829 * 13 2 1 15 15 C 1.55155 * 111.00633 * 175.16453 * 13 2 1 16 16 C 1.54322 * 102.94146 * 206.42217 * 15 13 2 17 17 N 1.47015 * 107.27113 * 22.19675 * 16 15 13 18 18 C 1.34784 * 125.64621 * 181.10000 * 17 16 15 19 19 O 1.21569 * 119.99886 * 185.08125 * 18 17 16 20 20 C 1.47675 * 119.99922 * 5.07590 * 18 17 16 21 21 C 1.39914 * 120.38765 * 172.22299 * 20 18 17 22 22 N 1.31442 * 121.13751 * 180.02562 * 21 20 18 23 23 C 1.32466 * 121.81180 * 359.97438 * 22 21 20 24 24 N 1.37877 * 133.44653 * 179.97438 * 23 22 21 25 25 H 0.96993 * 126.25379 * 0.02562 * 24 23 22 26 26 C 1.36518 * 107.49886 * 180.02562 * 24 23 22 27 27 O 1.35264 * 125.02748 * 179.97438 * 26 24 23 28 28 N 1.30729 * 109.95305 * 0.02562 * 26 24 23 29 29 C 1.35893 * 109.39755 * 359.97438 * 28 26 24 30 30 C 1.39410 * 133.63538 * 180.28777 * 29 28 26 31 31 C 1.47461 * 108.72590 * 1.01997 * 17 16 15 32 32 H 1.09001 * 109.47125 * 64.95777 * 1 2 3 33 33 H 1.09002 * 109.47100 * 184.95088 * 1 2 3 34 34 H 1.08992 * 109.47435 * 304.95237 * 1 2 3 35 35 H 0.97001 * 119.99780 * 95.00312 * 4 2 1 36 36 H 0.97001 * 119.99473 * 179.97438 * 8 7 5 37 37 H 1.08994 * 110.72246 * 324.79090 * 15 13 2 38 38 H 1.09003 * 110.72042 * 87.88462 * 15 13 2 39 39 H 1.09012 * 109.87824 * 141.61328 * 16 15 13 40 40 H 1.09005 * 109.88335 * 262.61549 * 16 15 13 41 41 H 1.08000 * 119.42888 * 0.02562 * 21 20 18 42 42 H 0.96701 * 114.00034 * 90.00394 * 27 26 24 43 43 H 1.08005 * 120.97024 * 359.94323 * 30 29 28 44 44 H 1.08998 * 110.41103 * 217.08617 * 31 17 16 45 45 H 1.09003 * 110.34755 * 94.74489 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6904 1.1963 5 6 2.1437 -0.0086 2.3772 6 1 1.8868 1.0393 2.4256 7 6 2.6009 -0.6643 3.5121 8 7 2.9144 -1.9412 3.4530 9 14 2.7713 0.2657 5.1231 10 1 2.3571 1.6780 4.9257 11 1 1.9056 -0.3642 6.1522 12 1 4.1860 0.2225 5.5724 13 6 2.0401 -0.7213 -1.2491 14 1 1.7035 -1.7580 -1.2639 15 6 3.5862 -0.6372 -1.3475 16 6 3.8431 -0.7586 -2.8644 17 7 2.6047 -0.3615 -3.5500 18 6 2.4140 -0.3515 -4.8842 19 8 1.3776 0.0841 -5.3469 20 6 3.4641 -0.8696 -5.7840 21 6 3.2148 -1.0144 -7.1531 22 7 4.1385 -1.4745 -7.9673 23 6 5.3417 -1.8203 -7.5341 24 7 6.4665 -2.3184 -8.1566 25 1 6.5605 -2.5118 -9.1025 26 6 7.4239 -2.4899 -7.1987 27 8 8.6708 -2.9637 -7.4232 28 7 6.9571 -2.1296 -6.0319 29 6 5.6737 -1.7052 -6.1708 30 6 4.7203 -1.2161 -5.2789 31 6 1.6047 0.0223 -2.5365 32 1 -0.3633 0.4350 -0.9311 33 1 -0.3633 -1.0238 0.0887 34 1 -0.3634 0.5887 0.8422 35 1 2.2490 -1.6316 1.1528 36 1 3.2342 -2.3993 4.2460 37 1 3.9451 0.3207 -0.9710 38 1 4.0525 -1.4613 -0.8075 39 1 4.6576 -0.0956 -3.1566 40 1 4.0953 -1.7887 -3.1164 41 1 2.2467 -0.7435 -7.5478 42 1 9.3210 -2.2780 -7.6285 43 1 4.9446 -1.1119 -4.2276 44 1 0.6097 -0.3006 -2.8429 45 1 1.6220 1.1003 -2.3761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724531788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:07 Heat of formation + Delta-G solvation = 27.550338 kcal Electronic energy + Delta-G solvation = -29471.881295 eV Core-core repulsion = 25298.000322 eV Total energy + Delta-G solvation = -4173.880973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.59556 -41.52216 -39.84572 -38.94779 -37.85741 -36.89168 -35.13300 -34.22089 -32.89072 -31.70533 -30.81020 -30.54085 -28.85967 -26.55086 -25.67325 -24.86290 -23.89559 -23.25468 -22.65852 -21.09472 -20.95289 -20.43713 -19.61738 -19.07938 -18.33417 -17.90572 -17.54467 -17.15793 -16.89535 -16.63923 -16.39416 -15.69183 -15.55734 -15.32998 -15.08248 -14.86727 -14.66677 -14.38996 -13.96016 -13.87053 -13.64697 -13.50621 -13.38139 -13.31059 -13.11528 -12.81721 -12.64339 -12.45912 -12.24398 -12.15512 -12.08700 -11.92193 -11.59984 -11.51409 -11.36065 -11.24858 -10.88375 -10.41900 -10.18749 -9.81932 -9.60718 -8.93205 -7.87735 -5.14043 -0.56523 -0.38818 0.95453 1.36712 1.50505 1.51800 1.60457 1.67577 1.80552 2.39116 2.60854 2.63020 3.07009 3.30257 3.42862 3.46964 3.57785 3.64292 3.73781 3.82742 3.89792 4.07479 4.20706 4.28387 4.38087 4.49151 4.50807 4.63189 4.66221 4.73447 4.76093 4.82676 4.91302 5.00210 5.07714 5.13669 5.23372 5.26677 5.35911 5.43444 5.59839 5.66167 5.66518 6.33497 6.35277 6.36517 6.45129 6.64487 6.96470 7.42054 8.18779 8.41648 9.35812 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.002296 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.568943 B =12192.324971 C =13805.344733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.182 3.818 3 H 0.050 0.950 4 N -0.731 5.731 5 C -0.226 4.226 6 H 0.074 0.926 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.963 3.037 10 H -0.268 1.268 11 H -0.299 1.299 12 H -0.296 1.296 13 C -0.095 4.095 14 H 0.078 0.922 15 C -0.114 4.114 16 C 0.089 3.911 17 N -0.607 5.607 18 C 0.585 3.415 19 O -0.566 6.566 20 C -0.192 4.192 21 C 0.197 3.803 22 N -0.490 5.490 23 C 0.257 3.743 24 N -0.573 5.573 25 H 0.444 0.556 26 C 0.486 3.514 27 O -0.433 6.433 28 N -0.502 5.502 29 C -0.009 4.009 30 C -0.011 4.011 31 C 0.121 3.879 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.373 0.627 36 H 0.248 0.752 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.192 0.808 42 H 0.441 0.559 43 H 0.191 0.809 44 H 0.079 0.921 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.450 1.164 -26.953 28.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.074 3.926 3 H 0.068 0.932 4 N -0.371 5.371 5 C -0.359 4.359 6 H 0.092 0.908 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.794 3.206 10 H -0.192 1.192 11 H -0.227 1.227 12 H -0.223 1.223 13 C -0.115 4.115 14 H 0.096 0.904 15 C -0.152 4.152 16 C -0.033 4.033 17 N -0.339 5.339 18 C 0.374 3.626 19 O -0.447 6.447 20 C -0.200 4.200 21 C 0.028 3.972 22 N -0.202 5.202 23 C 0.020 3.980 24 N -0.202 5.202 25 H 0.288 0.712 26 C 0.180 3.820 27 O -0.239 6.239 28 N -0.235 5.235 29 C -0.128 4.128 30 C -0.038 4.038 31 C -0.001 4.001 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.205 0.795 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.208 0.792 42 H 0.305 0.695 43 H 0.207 0.793 44 H 0.097 0.903 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.154 0.858 -27.168 28.682 hybrid contribution 0.294 0.150 0.774 0.842 sum 9.448 1.008 -26.394 28.052 Atomic orbital electron populations 1.22382 0.98167 1.00757 1.00740 1.20309 0.92357 0.95001 0.84967 0.93236 1.42536 1.78298 1.10357 1.05864 1.19590 1.34109 0.94034 0.88128 0.90815 1.25411 1.03544 0.96778 1.00990 1.69804 1.53145 1.10011 1.28996 0.85214 0.76603 0.78262 0.80562 1.19213 1.22700 1.22313 1.22468 0.95990 0.99853 0.93159 0.90407 1.22562 0.95437 1.03713 0.93534 1.22748 0.86678 1.01309 0.92539 1.48429 1.15835 1.64992 1.04629 1.17612 0.86141 0.78199 0.80612 1.90777 1.29467 1.48860 1.75606 1.20483 0.94828 1.08686 0.96018 1.22940 0.97153 0.89551 0.87514 1.66565 0.99085 1.15317 1.39265 1.19012 0.89127 0.99063 0.90824 1.42990 1.09736 1.54663 1.12769 0.71201 1.20244 0.85635 0.93710 0.82435 1.84852 1.12253 1.36481 1.90321 1.70750 1.09407 1.20548 1.22760 1.19544 0.93323 1.06698 0.93261 1.22521 0.89050 0.89574 1.02611 1.22260 0.92238 0.99761 0.85840 0.91225 0.94122 0.94503 0.79469 0.94303 0.90505 0.90257 0.88315 0.89143 0.79165 0.69484 0.79297 0.90264 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.34 9.38 71.98 0.68 -4.67 16 2 C 0.18 6.45 2.40 44.99 0.11 6.56 16 3 H 0.05 1.77 8.07 -2.39 -0.02 1.75 16 4 N -0.73 -33.95 4.90 -322.95 -1.58 -35.54 16 5 C -0.23 -11.92 9.93 84.03 0.83 -11.08 16 6 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 7 C -0.08 -4.17 5.50 84.86 0.47 -3.70 16 8 N -0.97 -57.51 13.06 21.65 0.28 -57.23 16 9 Si 0.96 45.24 29.55 68.60 2.03 47.27 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 12 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 13 C -0.09 -2.70 2.64 -9.40 -0.02 -2.72 16 14 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 15 C -0.11 -2.97 6.21 31.78 0.20 -2.77 16 16 C 0.09 1.80 4.87 86.73 0.42 2.22 16 17 N -0.61 -14.46 3.33 -818.40 -2.72 -17.18 16 18 C 0.58 14.92 7.80 86.74 0.68 15.60 16 19 O -0.57 -17.59 16.68 -3.93 -0.07 -17.66 16 20 C -0.19 -4.17 5.88 -20.01 -0.12 -4.29 16 21 C 0.20 4.04 10.74 85.16 0.91 4.96 16 22 N -0.49 -10.07 10.36 -191.61 -1.99 -12.06 16 23 C 0.26 4.99 8.45 133.83 1.13 6.12 16 24 N -0.57 -7.15 6.23 -306.99 -1.91 -9.06 16 25 H 0.44 2.57 8.96 -92.71 -0.83 1.74 16 26 C 0.49 6.77 9.39 179.72 1.69 8.46 16 27 O -0.43 -3.07 13.63 -85.48 -1.16 -4.23 16 28 N -0.50 -10.37 11.32 -306.39 -3.47 -13.84 16 29 C -0.01 -0.18 7.22 39.42 0.28 0.10 16 30 C -0.01 -0.23 8.71 22.92 0.20 -0.03 16 31 C 0.12 3.07 5.36 86.85 0.47 3.54 16 32 H 0.07 1.88 7.09 -2.39 -0.02 1.86 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.37 18.79 7.80 -92.71 -0.72 18.07 16 36 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.08 2.09 8.03 -2.39 -0.02 2.07 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.10 1.63 6.79 -2.38 -0.02 1.62 16 40 H 0.09 1.66 6.68 -2.38 -0.02 1.64 16 41 H 0.19 3.44 7.66 -2.91 -0.02 3.42 16 42 H 0.44 -2.01 9.06 -74.06 -0.67 -2.68 16 43 H 0.19 3.35 2.92 -4.12 -0.01 3.34 16 44 H 0.08 2.05 7.88 -2.39 -0.02 2.03 16 45 H 0.08 1.93 8.04 -2.39 -0.02 1.91 16 Total: -1.00 -73.96 372.55 -3.81 -77.77 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -1.13 Total: 23.47 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 7.92 Total: 18.29 kcal Atomic # 7 Polarization: -133.52 SS G_CDS: -11.39 Total: -144.91 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -1.23 Total: -21.89 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -73.96 -3.81 -77.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724531788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.320 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds