Wall clock time and date at job start Wed Apr 1 2020 05:02:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08994 * 109.47050 * 2 1
4 4 C 1.52998 * 109.47087 * 120.00292 * 2 1 3
5 5 N 1.46508 * 109.47149 * 174.99633 * 4 2 1
6 6 C 1.34777 * 119.99850 * 180.02562 * 5 4 2
7 7 O 1.21595 * 119.99991 * 0.02562 * 6 5 4
8 8 C 1.47471 * 119.99661 * 180.02562 * 6 5 4
9 9 C 1.39002 * 120.29089 * 359.72042 * 8 6 5
10 10 C 1.38506 * 120.36302 * 180.28305 * 9 8 6
11 11 C 1.37830 * 120.79175 * 0.02562 * 10 9 8
12 12 C 1.39213 * 120.19451 * 359.97438 * 11 10 9
13 13 N 1.37220 * 133.64509 * 180.02562 * 12 11 10
14 14 H 0.96998 * 125.98526 * 359.96018 * 13 12 11
15 15 N 1.40026 * 108.03194 * 179.97438 * 13 12 11
16 16 C 1.30268 * 109.70809 * 0.02562 * 15 13 12
17 17 C 1.40675 * 119.79471 * 0.02562 * 12 11 10
18 18 N 1.46896 * 109.46769 * 240.00369 * 2 1 3
19 19 C 1.46899 * 111.00147 * 85.00145 * 18 2 1
20 20 C 1.50706 * 109.47100 * 180.02562 * 19 18 2
21 21 O 1.21289 * 120.00198 * 359.97438 * 20 19 18
22 22 N 1.34781 * 119.99591 * 180.02562 * 20 19 18
23 23 C 1.37105 * 119.99433 * 179.97438 * 22 20 19
24 24 H 1.07997 * 120.00121 * 0.02562 * 23 22 20
25 25 C 1.38946 * 119.99583 * 179.97438 * 23 22 20
26 26 N 1.31415 * 120.00173 * 359.97438 * 25 23 22
27 27 Si 1.86799 * 120.00027 * 180.02562 * 25 23 22
28 28 H 1.48500 * 109.47540 * 89.99582 * 27 25 23
29 29 H 1.48493 * 109.47274 * 210.00023 * 27 25 23
30 30 H 1.48503 * 109.46789 * 329.99733 * 27 25 23
31 31 H 1.09002 * 109.47318 * 59.99217 * 1 2 3
32 32 H 1.08994 * 109.47050 * 179.97438 * 1 2 3
33 33 H 1.09004 * 109.46984 * 299.99947 * 1 2 3
34 34 H 1.09004 * 109.46933 * 55.00279 * 4 2 1
35 35 H 1.09000 * 109.47334 * 294.99745 * 4 2 1
36 36 H 0.97000 * 119.99730 * 0.02562 * 5 4 2
37 37 H 1.07994 * 119.82113 * 0.25372 * 9 8 6
38 38 H 1.08003 * 119.60469 * 179.97438 * 10 9 8
39 39 H 1.08002 * 119.90236 * 180.02562 * 11 10 9
40 40 H 1.08000 * 125.64841 * 180.02562 * 16 15 13
41 41 H 1.00904 * 111.00252 * 321.04172 * 18 2 1
42 42 H 1.08993 * 109.47205 * 299.99853 * 19 18 2
43 43 H 1.09001 * 109.47147 * 60.00285 * 19 18 2
44 44 H 0.96991 * 120.00332 * 359.97438 * 22 20 19
45 45 H 0.97004 * 119.99890 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 7 3.5001 -0.8265 1.1905
6 6 4.1730 -1.4294 2.1906
7 8 3.5683 -1.8864 3.1413
8 6 5.6428 -1.5348 2.1317
9 6 6.3397 -1.0196 1.0449
10 6 7.7196 -1.1230 0.9853
11 6 8.4256 -1.7364 1.9977
12 6 7.7561 -2.2622 3.0992
13 7 8.1670 -2.9125 4.2355
14 1 9.0834 -3.1283 4.4689
15 7 7.0316 -3.2105 4.9990
16 6 5.9655 -2.7780 4.3880
17 6 6.3547 -2.1663 3.1767
18 7 2.0196 -0.6924 -1.1995
19 6 2.0824 0.2227 -2.3469
20 6 2.5872 -0.5217 -3.5561
21 8 2.8675 -1.6986 -3.4704
22 7 2.7281 0.1207 -4.7325
23 6 3.1878 -0.5564 -5.8325
24 1 3.4366 -1.6046 -5.7564
25 6 3.3326 0.1057 -7.0455
26 7 3.0283 1.3808 -7.1385
27 14 3.9582 -0.8169 -8.5443
28 1 2.8089 -1.3991 -9.2828
29 1 4.6930 0.1203 -9.4314
30 1 4.8703 -1.9055 -8.1103
31 1 -0.3634 0.5140 -0.8899
32 1 -0.3633 -1.0276 -0.0005
33 1 -0.3633 0.5138 0.8900
34 1 1.6054 -1.7199 1.2950
35 1 1.7517 -0.1584 2.1370
36 1 3.9825 -0.4623 0.4318
37 1 5.8022 -0.5365 0.2424
38 1 8.2487 -0.7187 0.1349
39 1 9.5015 -1.8087 1.9367
40 1 4.9518 -2.8714 4.7487
41 1 1.4495 -1.4979 -1.4101
42 1 1.0871 0.6165 -2.5525
43 1 2.7589 1.0463 -2.1182
44 1 2.5042 1.0620 -4.8010
45 1 3.1298 1.8431 -7.9852
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001731610302.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:02:05
Heat of formation + Delta-G solvation = -8.081968 kcal
Electronic energy + Delta-G solvation = -28982.849657 eV
Core-core repulsion = 24807.423551 eV
Total energy + Delta-G solvation = -4175.426105 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-42.55600 -40.65754 -40.08833 -38.17418 -37.83301 -35.92862 -35.01696 -33.60214
-33.22442 -31.97943 -30.98783 -30.52513 -27.91760 -27.32885 -25.65608 -24.71987
-23.51819 -22.67329 -21.93230 -21.54511 -21.05319 -19.87813 -19.25357 -17.98000
-17.77078 -17.35298 -17.10001 -16.65337 -16.47916 -16.29552 -16.05298 -15.92300
-15.73620 -15.62983 -15.30375 -15.15268 -14.64099 -14.44939 -14.32909 -13.70912
-13.62609 -13.39538 -13.35029 -13.04450 -12.91369 -12.79006 -12.73681 -12.71899
-12.48060 -12.36719 -12.10046 -12.03357 -11.84973 -11.46434 -11.37688 -10.92879
-10.28545 -10.01757 -9.96361 -9.72421 -9.30416 -9.08476 -8.43028 -5.90760
-0.55016 0.36201 1.40167 1.40902 1.44617 1.56410 1.72640 1.89026
2.11908 2.22516 2.31937 2.85331 2.94652 3.25224 3.52965 3.61038
3.65794 3.83963 3.87930 3.99864 4.02720 4.15652 4.31036 4.37509
4.40324 4.54685 4.57698 4.66729 4.70271 4.73456 4.85230 4.86904
4.93561 5.04543 5.21280 5.29083 5.32480 5.39440 5.45219 5.51760
5.71852 5.93555 6.14478 6.29121 6.40022 6.52430 6.62099 6.65275
7.17886 7.24795 7.62734 8.18261 8.74173
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.011432 B = 0.002394 C = 0.002049
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2448.588712 B =11693.426300 C =13662.645925
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.076 3.924
3 H 0.103 0.897
4 C 0.135 3.865
5 N -0.697 5.697
6 C 0.551 3.449
7 O -0.575 6.575
8 C -0.080 4.080
9 C -0.109 4.109
10 C -0.076 4.076
11 C -0.107 4.107
12 C 0.109 3.891
13 N -0.498 5.498
14 H 0.455 0.545
15 N -0.270 5.270
16 C 0.075 3.925
17 C -0.157 4.157
18 N -0.674 5.674
19 C 0.065 3.935
20 C 0.439 3.561
21 O -0.622 6.622
22 N -0.574 5.574
23 C -0.329 4.329
24 H 0.078 0.922
25 C -0.012 4.012
26 N -0.920 5.920
27 Si 0.988 3.012
28 H -0.274 1.274
29 H -0.272 1.272
30 H -0.273 1.273
31 H 0.061 0.939
32 H 0.057 0.943
33 H 0.081 0.919
34 H 0.055 0.945
35 H 0.082 0.918
36 H 0.413 0.587
37 H 0.146 0.854
38 H 0.169 0.831
39 H 0.166 0.834
40 H 0.197 0.803
41 H 0.345 0.655
42 H 0.067 0.933
43 H 0.112 0.888
44 H 0.396 0.604
45 H 0.276 0.724
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.198 2.027 18.122 19.259
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C -0.034 4.034
3 H 0.121 0.879
4 C 0.011 3.989
5 N -0.348 5.348
6 C 0.339 3.661
7 O -0.457 6.457
8 C -0.086 4.086
9 C -0.129 4.129
10 C -0.096 4.096
11 C -0.129 4.129
12 C -0.009 4.009
13 N -0.215 5.215
14 H 0.303 0.697
15 N -0.086 5.086
16 C -0.120 4.120
17 C -0.166 4.166
18 N -0.306 5.306
19 C -0.067 4.067
20 C 0.227 3.773
21 O -0.509 6.509
22 N -0.212 5.212
23 C -0.459 4.459
24 H 0.096 0.904
25 C -0.212 4.212
26 N -0.561 5.561
27 Si 0.812 3.188
28 H -0.200 1.200
29 H -0.197 1.197
30 H -0.198 1.198
31 H 0.080 0.920
32 H 0.076 0.924
33 H 0.100 0.900
34 H 0.073 0.927
35 H 0.100 0.900
36 H 0.251 0.749
37 H 0.163 0.837
38 H 0.187 0.813
39 H 0.183 0.817
40 H 0.214 0.786
41 H 0.164 0.836
42 H 0.084 0.916
43 H 0.129 0.871
44 H 0.230 0.770
45 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 7.060 0.532 19.906 21.127
hybrid contribution -0.657 0.402 -2.008 2.150
sum 6.403 0.934 17.898 19.032
Atomic orbital electron populations
1.22383 0.94899 1.02790 1.03516 1.21873 0.94371 0.98547 0.88576
0.87941 1.21418 0.79234 1.00693 0.97597 1.45726 1.08269 1.58037
1.22802 1.18356 0.87406 0.77900 0.82440 1.90687 1.70536 1.49672
1.34787 1.19463 0.92194 1.01434 0.95512 1.21514 0.95664 0.99161
0.96582 1.21367 0.93190 0.96426 0.98639 1.20674 1.01684 0.99496
0.91009 1.19095 0.93324 0.97508 0.90953 1.46079 1.08734 1.51245
1.15472 0.69666 1.76707 0.92885 1.20196 1.18796 1.24183 0.98785
0.96288 0.92694 1.18895 0.93213 1.06932 0.97569 1.60164 1.58460
1.09078 1.02917 1.21588 1.01360 0.95314 0.88419 1.20937 0.83239
0.87984 0.85170 1.90515 1.56507 1.18374 1.85468 1.41934 1.58454
1.12606 1.08203 1.19617 1.41880 0.95839 0.88560 0.90446 1.25958
0.97415 0.96567 1.01248 1.69664 1.48854 1.09596 1.28012 0.84995
0.78389 0.77900 0.77495 1.19958 1.19666 1.19773 0.91951 0.92436
0.89961 0.92701 0.90005 0.74888 0.83669 0.81317 0.81669 0.78594
0.83606 0.91560 0.87053 0.76965 0.91416
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.78 9.16 71.98 0.66 -2.12 16
2 C 0.08 1.40 2.75 44.92 0.12 1.52 16
3 H 0.10 1.58 7.80 -2.39 -0.02 1.56 16
4 C 0.13 2.79 5.37 86.38 0.46 3.25 16
5 N -0.70 -15.99 5.34 -466.31 -2.49 -18.48 16
6 C 0.55 15.01 7.76 86.68 0.67 15.68 16
7 O -0.58 -18.58 14.94 -4.02 -0.06 -18.64 16
8 C -0.08 -1.98 5.90 -19.90 -0.12 -2.10 16
9 C -0.11 -2.13 9.52 22.52 0.21 -1.92 16
10 C -0.08 -1.14 10.00 22.24 0.22 -0.92 16
11 C -0.11 -1.57 10.06 22.41 0.23 -1.34 16
12 C 0.11 2.23 7.32 39.13 0.29 2.51 16
13 N -0.50 -9.44 7.45 -51.56 -0.38 -9.83 16
14 H 0.46 5.20 8.96 -213.37 -1.91 3.29 16
15 N -0.27 -6.69 12.58 -56.44 -0.71 -7.40 16
16 C 0.07 1.98 11.23 85.65 0.96 2.94 16
17 C -0.16 -4.03 6.00 -21.20 -0.13 -4.16 16
18 N -0.67 -17.49 5.32 -495.59 -2.63 -20.13 16
19 C 0.07 1.88 5.97 85.56 0.51 2.39 16
20 C 0.44 19.05 7.82 87.66 0.69 19.74 16
21 O -0.62 -32.26 15.78 -3.06 -0.05 -32.31 16
22 N -0.57 -27.57 5.29 -306.98 -1.62 -29.19 16
23 C -0.33 -17.92 9.68 84.04 0.81 -17.10 16
24 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16
25 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16
26 N -0.92 -47.90 13.05 21.66 0.28 -47.62 16
27 Si 0.99 41.66 29.55 68.60 2.03 43.69 16
28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16
29 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16
30 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16
31 H 0.06 1.01 7.45 -2.39 -0.02 0.99 16
32 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16
33 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16
34 H 0.05 1.30 8.14 -2.38 -0.02 1.29 16
35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
36 H 0.41 8.77 6.17 -92.71 -0.57 8.20 16
37 H 0.15 2.49 6.38 -2.91 -0.02 2.47 16
38 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16
39 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16
40 H 0.20 5.16 6.95 -2.91 -0.02 5.14 16
41 H 0.34 10.16 8.17 -89.69 -0.73 9.43 16
42 H 0.07 1.68 7.44 -2.39 -0.02 1.66 16
43 H 0.11 2.69 8.06 -2.39 -0.02 2.67 16
44 H 0.40 18.00 7.90 -92.71 -0.73 17.27 16
45 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16
Total: -1.00 -73.46 384.06 -2.43 -75.89
By element:
Atomic # 1 Polarization: 48.66 SS G_CDS: -2.86 Total: 45.81 kcal
Atomic # 6 Polarization: 12.16 SS G_CDS: 6.06 Total: 18.22 kcal
Atomic # 7 Polarization: -125.10 SS G_CDS: -7.56 Total: -132.65 kcal
Atomic # 8 Polarization: -50.85 SS G_CDS: -0.11 Total: -50.96 kcal
Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal
Total: -73.46 -2.43 -75.89 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731610302.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.812 kcal
(2) G-P(sol) polarization free energy of solvation -73.461 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.649 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.433 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.894 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.082 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds