Wall clock time and date at job start Wed Apr 1 2020 03:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46861 * 2 1 4 4 N 1.46500 * 109.46951 * 119.99756 * 2 1 3 5 5 C 1.36927 * 120.00175 * 275.00069 * 4 2 1 6 6 H 1.08002 * 120.00250 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00055 * 180.27480 * 5 4 2 8 8 N 1.31616 * 119.99738 * 359.72666 * 7 5 4 9 9 Si 1.86800 * 119.99784 * 179.72651 * 7 5 4 10 10 H 1.48499 * 109.47425 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47139 * 120.00302 * 9 7 5 12 12 H 1.48505 * 109.46904 * 239.99831 * 9 7 5 13 13 C 1.53004 * 109.47005 * 240.00030 * 2 1 3 14 14 H 1.09000 * 109.50645 * 184.99974 * 13 2 1 15 15 C 1.53294 * 109.51475 * 64.90116 * 13 2 1 16 16 N 1.47147 * 108.38517 * 187.77350 * 15 13 2 17 17 C 1.34772 * 120.97983 * 230.55447 * 16 15 13 18 18 O 1.21550 * 120.00268 * 356.14728 * 17 16 15 19 19 C 1.47882 * 119.99797 * 176.14303 * 17 16 15 20 20 C 1.39902 * 125.69423 * 186.60241 * 19 17 16 21 21 C 1.38587 * 107.59249 * 179.97438 * 20 19 17 22 22 N 1.34112 * 132.34165 * 180.02562 * 21 20 19 23 23 C 1.31134 * 120.84180 * 180.02562 * 22 21 20 24 24 C 1.40349 * 120.29724 * 359.93442 * 23 22 21 25 25 C 1.35456 * 119.46226 * 0.02906 * 24 23 22 26 26 N 1.36671 * 119.14075 * 0.02562 * 25 24 23 27 27 N 1.32377 * 125.69300 * 6.29761 * 19 17 16 28 28 C 1.47149 * 118.03682 * 50.53277 * 16 15 13 29 29 C 1.53296 * 108.38656 * 309.46674 * 28 16 15 30 30 O 1.42962 * 109.50843 * 305.10109 * 13 2 1 31 31 H 1.08998 * 109.46971 * 300.00554 * 1 2 3 32 32 H 1.09000 * 109.46800 * 60.00030 * 1 2 3 33 33 H 1.08997 * 109.46989 * 179.97438 * 1 2 3 34 34 H 0.97000 * 119.99783 * 94.99783 * 4 2 1 35 35 H 0.97005 * 119.99849 * 179.97438 * 8 7 5 36 36 H 1.09008 * 109.67714 * 307.49707 * 15 13 2 37 37 H 1.09001 * 109.67888 * 68.00986 * 15 13 2 38 38 H 1.08000 * 126.20363 * 359.95537 * 20 19 17 39 39 H 1.07993 * 119.85363 * 179.97438 * 23 22 21 40 40 H 1.07992 * 120.26519 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.42862 * 180.02562 * 25 24 23 42 42 H 1.08999 * 109.68142 * 69.18621 * 28 16 15 43 43 H 1.08998 * 109.68597 * 189.73989 * 28 16 15 44 44 H 1.08998 * 109.51457 * 172.22272 * 29 28 16 45 45 H 1.09003 * 109.51318 * 292.37949 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6172 -0.6604 3.5077 8 7 2.9302 -1.9375 3.4486 9 14 2.8028 0.2734 5.1149 10 1 2.3877 1.6855 4.9177 11 1 1.9471 -0.3542 6.1537 12 1 4.2218 0.2313 5.5508 13 6 2.0400 -0.7213 -1.2493 14 1 3.1264 -0.7998 -1.2062 15 6 1.6329 0.0684 -2.4985 16 7 1.9679 -0.7350 -3.6850 17 6 2.6736 -0.2062 -4.7041 18 8 2.9831 0.9690 -4.6838 19 6 3.0716 -1.0560 -5.8471 20 6 3.9097 -0.6696 -6.8986 21 6 4.0303 -1.7509 -7.7571 22 7 4.7049 -1.9234 -8.9033 23 6 4.6592 -3.0662 -9.5448 24 6 3.9004 -4.1327 -9.0382 25 6 3.2148 -3.9721 -7.8810 26 7 3.2775 -2.7711 -7.2316 27 7 2.6989 -2.3110 -6.0432 28 6 1.5099 -2.1328 -3.7256 29 6 1.9231 -2.8152 -2.4166 30 8 1.4686 -2.0302 -1.3115 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6317 1.1527 35 1 3.2577 -2.3937 4.2396 36 1 0.5603 0.2619 -2.4770 37 1 2.1758 1.0130 -2.5288 38 1 4.3776 0.2962 -7.0196 39 1 5.2083 -3.1875 -10.4667 40 1 3.8634 -5.0738 -9.5667 41 1 2.6264 -4.7825 -7.4768 42 1 0.4251 -2.1609 -3.8277 43 1 1.9718 -2.6462 -4.5689 44 1 1.4755 -3.8078 -2.3664 45 1 3.0089 -2.9022 -2.3783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734181980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:59 Heat of formation + Delta-G solvation = 84.137523 kcal Electronic energy + Delta-G solvation = -29970.447540 eV Core-core repulsion = 25799.020372 eV Total energy + Delta-G solvation = -4171.427168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.80594 -40.42835 -38.73313 -37.98596 -35.53411 -34.58993 -34.54020 -32.54867 -31.72104 -30.24430 -29.62097 -28.49672 -27.52800 -25.71011 -24.65530 -24.31442 -23.38642 -22.96398 -21.70633 -19.75009 -19.54241 -18.56090 -18.35586 -17.26759 -17.01116 -16.62230 -16.39648 -15.98584 -15.68891 -15.41737 -15.25587 -14.86957 -14.56025 -14.40742 -14.09141 -13.85417 -13.51740 -13.42418 -13.28779 -12.97952 -12.84561 -12.61988 -12.34607 -12.03384 -11.76363 -11.42370 -11.19627 -11.09497 -10.82690 -10.70883 -10.59144 -10.47206 -10.29369 -10.09489 -10.03547 -9.81181 -9.77996 -9.62450 -8.87543 -8.55885 -8.42351 -6.90612 -5.71098 -2.99642 -0.03633 0.21497 1.39155 1.44398 2.62023 2.84050 3.08212 3.34300 3.46698 3.49116 3.52395 3.54569 3.84121 4.04580 4.19926 4.36153 4.60175 4.66103 4.77349 4.83987 4.95359 5.04717 5.18084 5.21895 5.24443 5.35701 5.43360 5.60448 5.66319 5.70395 5.78140 5.80216 5.81977 5.99071 6.01407 6.03687 6.24362 6.40198 6.49208 6.67773 6.75377 6.85473 7.07408 7.15177 7.20402 7.51301 7.74968 7.85496 8.47072 9.59037 10.16817 10.53468 11.51455 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022980 B = 0.002186 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.149354 B =12803.615637 C =13058.963005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.237 4.237 6 H 0.071 0.929 7 C -0.015 4.015 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.076 3.924 14 H 0.064 0.936 15 C 0.082 3.918 16 N -0.594 5.594 17 C 0.595 3.405 18 O -0.517 6.517 19 C 0.084 3.916 20 C -0.199 4.199 21 C 0.253 3.747 22 N -0.457 5.457 23 C 0.180 3.820 24 C -0.221 4.221 25 C 0.161 3.839 26 N -0.308 5.308 27 N -0.281 5.281 28 C 0.045 3.955 29 C 0.049 3.951 30 O -0.359 6.359 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.057 0.943 34 H 0.389 0.611 35 H 0.254 0.746 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.174 0.826 39 H 0.182 0.818 40 H 0.170 0.830 41 H 0.183 0.817 42 H 0.077 0.923 43 H 0.136 0.864 44 H 0.103 0.897 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 -7.423 -29.925 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.078 0.922 4 N -0.361 5.361 5 C -0.368 4.368 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.220 1.220 13 C 0.017 3.983 14 H 0.082 0.918 15 C -0.040 4.040 16 N -0.327 5.327 17 C 0.379 3.621 18 O -0.391 6.391 19 C -0.073 4.073 20 C -0.230 4.230 21 C 0.027 3.973 22 N -0.167 5.167 23 C -0.006 4.006 24 C -0.245 4.245 25 C 0.027 3.973 26 N -0.080 5.080 27 N -0.111 5.111 28 C -0.078 4.078 29 C -0.029 4.029 30 O -0.276 6.276 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.223 0.777 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.192 0.808 39 H 0.199 0.801 40 H 0.188 0.812 41 H 0.200 0.800 42 H 0.096 0.904 43 H 0.152 0.848 44 H 0.121 0.879 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.396 -6.725 -29.191 29.958 hybrid contribution 0.295 -0.160 0.608 0.695 sum -0.101 -6.885 -28.582 29.400 Atomic orbital electron populations 1.22417 0.98620 1.01650 0.99569 1.20199 0.92852 0.94626 0.84896 0.92195 1.42358 1.77849 1.10974 1.04871 1.19300 1.36220 0.93935 0.87373 0.91074 1.24745 1.02252 0.95992 0.98058 1.69693 1.50824 1.08683 1.28732 0.86130 0.77252 0.78824 0.84074 1.20540 1.21946 1.21959 1.22982 0.97703 0.83126 0.94530 0.91790 1.22625 1.02376 0.95753 0.83215 1.48028 1.52822 1.13562 1.18248 1.16998 0.78507 0.85970 0.80589 1.90830 1.55297 1.14964 1.77993 1.22133 0.97149 0.91698 0.96367 1.20973 1.07618 0.99994 0.94371 1.20562 0.94007 0.89768 0.92980 1.68277 1.19181 1.24391 1.04883 1.23487 0.92413 0.86785 0.97878 1.21908 1.02013 1.03271 0.97299 1.22160 0.96938 0.86624 0.91569 1.47528 1.32457 1.10560 1.17467 1.77828 1.23520 1.11952 0.97832 1.23409 1.01261 0.81361 1.01819 1.22891 0.99362 0.95207 0.85473 1.88096 1.67692 1.25676 1.46178 0.92858 0.94639 0.92423 0.77680 0.93655 0.89612 0.87914 0.80849 0.80061 0.81249 0.80030 0.90445 0.84751 0.87905 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.06 37.16 0.34 -2.70 16 2 C 0.18 3.77 2.77 -67.93 -0.19 3.58 16 3 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 4 N -0.72 -18.49 5.10 -53.42 -0.27 -18.76 16 5 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 6 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 8 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 9 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 C 0.08 1.34 2.61 -26.58 -0.07 1.27 16 14 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 15 C 0.08 1.25 5.81 -3.54 -0.02 1.23 16 16 N -0.59 -8.51 3.02 -173.38 -0.52 -9.03 16 17 C 0.60 8.99 7.72 -12.31 -0.10 8.90 16 18 O -0.52 -9.06 16.38 5.32 0.09 -8.98 16 19 C 0.08 1.12 6.84 -83.06 -0.57 0.55 16 20 C -0.20 -2.48 10.66 -38.83 -0.41 -2.89 16 21 C 0.25 2.78 7.90 -155.42 -1.23 1.55 16 22 N -0.46 -4.15 10.48 -12.22 -0.13 -4.28 16 23 C 0.18 0.81 11.27 -17.06 -0.19 0.62 16 24 C -0.22 -0.60 10.05 -39.78 -0.40 -1.00 16 25 C 0.16 0.81 11.30 -16.39 -0.19 0.62 16 26 N -0.31 -2.96 3.90 -12.20 -0.05 -3.01 16 27 N -0.28 -3.25 8.97 33.23 0.30 -2.95 16 28 C 0.05 0.55 6.48 -3.53 -0.02 0.53 16 29 C 0.05 0.66 6.98 37.31 0.26 0.92 16 30 O -0.36 -6.29 9.24 -35.23 -0.33 -6.62 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.03 0.55 6.42 -51.93 -0.33 0.22 16 33 H 0.06 1.13 7.56 -51.93 -0.39 0.74 16 34 H 0.39 10.81 7.58 -40.82 -0.31 10.50 16 35 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.09 1.23 6.27 -51.92 -0.33 0.90 16 37 H 0.10 1.60 7.11 -51.93 -0.37 1.23 16 38 H 0.17 2.05 8.06 -52.49 -0.42 1.62 16 39 H 0.18 0.10 8.06 -52.49 -0.42 -0.32 16 40 H 0.17 -0.21 8.06 -52.49 -0.42 -0.63 16 41 H 0.18 0.32 8.06 -52.49 -0.42 -0.10 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.14 1.53 3.81 -110.96 -0.42 1.11 16 44 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -36.48 371.83 -8.56 -45.04 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.92 Total: 7.33 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -3.03 Total: 5.84 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: 0.05 Total: -65.94 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.24 Total: -15.60 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.48 -8.56 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734181980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.177 kcal (2) G-P(sol) polarization free energy of solvation -36.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds