Wall clock time and date at job start Wed Apr 1 2020 03:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46861 * 2 1 4 4 N 1.46500 * 109.46951 * 119.99756 * 2 1 3 5 5 C 1.36927 * 120.00175 * 275.00069 * 4 2 1 6 6 H 1.08002 * 120.00250 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00055 * 180.27480 * 5 4 2 8 8 N 1.31616 * 119.99738 * 359.72666 * 7 5 4 9 9 Si 1.86800 * 119.99784 * 179.72651 * 7 5 4 10 10 H 1.48499 * 109.47425 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47139 * 120.00302 * 9 7 5 12 12 H 1.48505 * 109.46904 * 239.99831 * 9 7 5 13 13 C 1.53004 * 109.47005 * 240.00030 * 2 1 3 14 14 H 1.09000 * 109.50645 * 184.99974 * 13 2 1 15 15 C 1.53294 * 109.51475 * 64.90116 * 13 2 1 16 16 N 1.47147 * 108.38517 * 187.77350 * 15 13 2 17 17 C 1.34772 * 120.97983 * 230.55447 * 16 15 13 18 18 O 1.21550 * 120.00268 * 356.14728 * 17 16 15 19 19 C 1.47882 * 119.99797 * 176.14303 * 17 16 15 20 20 C 1.39902 * 125.69423 * 186.60241 * 19 17 16 21 21 C 1.38587 * 107.59249 * 179.97438 * 20 19 17 22 22 N 1.34112 * 132.34165 * 180.02562 * 21 20 19 23 23 C 1.31134 * 120.84180 * 180.02562 * 22 21 20 24 24 C 1.40349 * 120.29724 * 359.93442 * 23 22 21 25 25 C 1.35456 * 119.46226 * 0.02906 * 24 23 22 26 26 N 1.36671 * 119.14075 * 0.02562 * 25 24 23 27 27 N 1.32377 * 125.69300 * 6.29761 * 19 17 16 28 28 C 1.47149 * 118.03682 * 50.53277 * 16 15 13 29 29 C 1.53296 * 108.38656 * 309.46674 * 28 16 15 30 30 O 1.42962 * 109.50843 * 305.10109 * 13 2 1 31 31 H 1.08998 * 109.46971 * 300.00554 * 1 2 3 32 32 H 1.09000 * 109.46800 * 60.00030 * 1 2 3 33 33 H 1.08997 * 109.46989 * 179.97438 * 1 2 3 34 34 H 0.97000 * 119.99783 * 94.99783 * 4 2 1 35 35 H 0.97005 * 119.99849 * 179.97438 * 8 7 5 36 36 H 1.09008 * 109.67714 * 307.49707 * 15 13 2 37 37 H 1.09001 * 109.67888 * 68.00986 * 15 13 2 38 38 H 1.08000 * 126.20363 * 359.95537 * 20 19 17 39 39 H 1.07993 * 119.85363 * 179.97438 * 23 22 21 40 40 H 1.07992 * 120.26519 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.42862 * 180.02562 * 25 24 23 42 42 H 1.08999 * 109.68142 * 69.18621 * 28 16 15 43 43 H 1.08998 * 109.68597 * 189.73989 * 28 16 15 44 44 H 1.08998 * 109.51457 * 172.22272 * 29 28 16 45 45 H 1.09003 * 109.51318 * 292.37949 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6172 -0.6604 3.5077 8 7 2.9302 -1.9375 3.4486 9 14 2.8028 0.2734 5.1149 10 1 2.3877 1.6855 4.9177 11 1 1.9471 -0.3542 6.1537 12 1 4.2218 0.2313 5.5508 13 6 2.0400 -0.7213 -1.2493 14 1 3.1264 -0.7998 -1.2062 15 6 1.6329 0.0684 -2.4985 16 7 1.9679 -0.7350 -3.6850 17 6 2.6736 -0.2062 -4.7041 18 8 2.9831 0.9690 -4.6838 19 6 3.0716 -1.0560 -5.8471 20 6 3.9097 -0.6696 -6.8986 21 6 4.0303 -1.7509 -7.7571 22 7 4.7049 -1.9234 -8.9033 23 6 4.6592 -3.0662 -9.5448 24 6 3.9004 -4.1327 -9.0382 25 6 3.2148 -3.9721 -7.8810 26 7 3.2775 -2.7711 -7.2316 27 7 2.6989 -2.3110 -6.0432 28 6 1.5099 -2.1328 -3.7256 29 6 1.9231 -2.8152 -2.4166 30 8 1.4686 -2.0302 -1.3115 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6317 1.1527 35 1 3.2577 -2.3937 4.2396 36 1 0.5603 0.2619 -2.4770 37 1 2.1758 1.0130 -2.5288 38 1 4.3776 0.2962 -7.0196 39 1 5.2083 -3.1875 -10.4667 40 1 3.8634 -5.0738 -9.5667 41 1 2.6264 -4.7825 -7.4768 42 1 0.4251 -2.1609 -3.8277 43 1 1.9718 -2.6462 -4.5689 44 1 1.4755 -3.8078 -2.3664 45 1 3.0089 -2.9022 -2.3783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734181980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:57 Heat of formation + Delta-G solvation = 57.798148 kcal Electronic energy + Delta-G solvation = -29971.589701 eV Core-core repulsion = 25799.020372 eV Total energy + Delta-G solvation = -4172.569329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.48763 -41.56638 -39.85123 -38.82485 -37.16678 -35.90340 -35.11897 -34.35856 -32.57287 -31.71547 -30.36346 -29.98606 -28.85281 -26.79286 -25.99323 -25.10130 -24.88054 -23.88483 -22.84491 -21.20296 -20.58484 -19.37686 -19.22990 -19.09777 -17.80892 -17.48085 -17.38001 -17.17171 -16.71186 -16.59351 -16.49746 -16.13618 -15.85207 -15.46769 -15.31206 -15.13744 -14.68374 -14.51863 -14.41827 -14.02516 -13.89237 -13.70831 -13.62436 -13.47747 -13.05100 -12.86931 -12.48004 -12.46177 -12.37999 -12.22206 -12.13485 -11.81434 -11.73524 -11.64902 -11.36701 -11.17252 -10.95006 -10.74509 -10.66730 -9.74616 -9.16189 -9.00869 -7.92064 -5.20748 -0.56564 -0.38021 0.60918 0.75596 1.47436 1.48411 1.56361 1.58738 1.98100 2.38428 2.56671 2.65102 2.77911 2.80592 3.39655 3.43343 3.55661 3.58327 3.87707 3.92040 3.97009 3.98926 4.10174 4.17865 4.26440 4.32703 4.35451 4.40316 4.52136 4.59339 4.60407 4.67856 4.75689 4.85255 4.93671 5.00751 5.07348 5.09586 5.21717 5.25528 5.40531 5.52604 5.62602 5.93871 6.12632 6.21505 6.29576 6.55286 6.72212 7.35708 8.10907 8.35975 9.31777 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022980 B = 0.002186 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.149354 B =12803.615637 C =13058.963005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.177 3.823 3 H 0.062 0.938 4 N -0.732 5.732 5 C -0.236 4.236 6 H 0.078 0.922 7 C -0.079 4.079 8 N -0.970 5.970 9 Si 0.973 3.027 10 H -0.265 1.265 11 H -0.294 1.294 12 H -0.295 1.295 13 C 0.090 3.910 14 H 0.040 0.960 15 C 0.092 3.908 16 N -0.595 5.595 17 C 0.594 3.406 18 O -0.553 6.553 19 C 0.066 3.934 20 C -0.234 4.234 21 C 0.253 3.747 22 N -0.497 5.497 23 C 0.190 3.810 24 C -0.188 4.188 25 C 0.136 3.864 26 N -0.306 5.306 27 N -0.291 5.291 28 C 0.052 3.948 29 C 0.045 3.955 30 O -0.379 6.379 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.375 0.625 35 H 0.249 0.751 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.163 0.837 39 H 0.226 0.774 40 H 0.224 0.776 41 H 0.216 0.784 42 H 0.092 0.908 43 H 0.149 0.851 44 H 0.130 0.870 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.749 -9.320 -32.898 34.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.068 3.932 3 H 0.080 0.920 4 N -0.373 5.373 5 C -0.368 4.368 6 H 0.096 0.904 7 C -0.271 4.271 8 N -0.621 5.621 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.221 1.221 12 H -0.222 1.222 13 C 0.030 3.970 14 H 0.058 0.942 15 C -0.031 4.031 16 N -0.327 5.327 17 C 0.380 3.620 18 O -0.429 6.429 19 C -0.090 4.090 20 C -0.266 4.266 21 C 0.025 3.975 22 N -0.210 5.210 23 C 0.007 3.993 24 C -0.211 4.211 25 C 0.004 3.996 26 N -0.078 5.078 27 N -0.122 5.122 28 C -0.071 4.071 29 C -0.032 4.032 30 O -0.298 6.298 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.207 0.793 35 H 0.058 0.942 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.180 0.820 39 H 0.242 0.758 40 H 0.240 0.760 41 H 0.233 0.767 42 H 0.110 0.890 43 H 0.165 0.835 44 H 0.148 0.852 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.013 -8.634 -32.217 33.369 hybrid contribution 0.552 0.207 1.172 1.312 sum -0.461 -8.427 -31.045 32.172 Atomic orbital electron populations 1.22220 0.96741 1.01246 1.00631 1.20430 0.94005 0.94553 0.84219 0.92026 1.42534 1.78293 1.10465 1.05969 1.19698 1.34557 0.94294 0.88276 0.90373 1.25574 1.03086 0.96945 1.01519 1.69853 1.52626 1.10305 1.29322 0.85072 0.76684 0.78242 0.79771 1.18913 1.22131 1.22244 1.22598 0.96105 0.83836 0.94447 0.94185 1.22422 1.02985 0.95101 0.82585 1.48088 1.52655 1.14315 1.17661 1.17286 0.77806 0.85837 0.81097 1.90789 1.56608 1.16543 1.78969 1.21712 0.98651 0.92476 0.96189 1.20945 1.09250 1.00744 0.95665 1.20544 0.93975 0.89632 0.93381 1.68379 1.20612 1.27034 1.04925 1.24467 0.91043 0.85622 0.98155 1.22592 0.98507 1.04347 0.95609 1.23119 0.98240 0.85875 0.92367 1.47674 1.31672 1.11703 1.16777 1.77556 1.24373 1.11003 0.99276 1.23499 1.02116 0.80067 1.01382 1.23135 0.99087 0.96017 0.84969 1.88051 1.67859 1.25681 1.48172 0.94213 0.91063 0.93491 0.79320 0.94174 0.88120 0.88573 0.81967 0.75787 0.75977 0.76719 0.88995 0.83486 0.85196 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 9.06 71.98 0.65 -4.83 16 2 C 0.18 7.30 2.77 44.99 0.12 7.43 16 3 H 0.06 2.52 8.08 -2.39 -0.02 2.50 16 4 N -0.73 -38.64 5.10 -322.93 -1.65 -40.29 16 5 C -0.24 -13.50 9.93 84.04 0.83 -12.66 16 6 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 7 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 8 N -0.97 -61.26 13.06 21.65 0.28 -60.98 16 9 Si 0.97 47.47 29.55 68.60 2.03 49.50 16 10 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 12 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 13 C 0.09 3.25 2.61 30.69 0.08 3.33 16 14 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 15 C 0.09 2.81 5.81 86.35 0.50 3.31 16 16 N -0.60 -17.31 3.02 -820.73 -2.48 -19.79 16 17 C 0.59 18.83 7.72 86.80 0.67 19.50 16 18 O -0.55 -20.62 16.38 -3.87 -0.06 -20.69 16 19 C 0.07 1.82 6.84 42.02 0.29 2.11 16 20 C -0.23 -6.26 10.66 22.76 0.24 -6.02 16 21 C 0.25 5.49 7.90 133.00 1.05 6.54 16 22 N -0.50 -8.22 10.48 -192.58 -2.02 -10.24 16 23 C 0.19 0.90 11.27 85.31 0.96 1.86 16 24 C -0.19 0.00 10.05 22.14 0.22 0.23 16 25 C 0.14 0.84 11.30 83.30 0.94 1.78 16 26 N -0.31 -5.42 3.90 -192.50 -0.75 -6.17 16 27 N -0.29 -6.61 8.97 -48.78 -0.44 -7.04 16 28 C 0.05 1.23 6.48 86.35 0.56 1.79 16 29 C 0.05 1.21 6.98 72.08 0.50 1.71 16 30 O -0.38 -13.41 9.24 -148.98 -1.38 -14.78 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 2.09 6.42 -2.39 -0.02 2.08 16 33 H 0.05 1.82 7.56 -2.39 -0.02 1.80 16 34 H 0.37 21.61 7.58 -92.71 -0.70 20.91 16 35 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 36 H 0.10 2.77 6.27 -2.38 -0.01 2.76 16 37 H 0.10 3.09 7.11 -2.39 -0.02 3.07 16 38 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 39 H 0.23 -1.03 8.06 -2.91 -0.02 -1.05 16 40 H 0.22 -2.30 8.06 -2.91 -0.02 -2.33 16 41 H 0.22 -0.25 8.06 -2.91 -0.02 -0.28 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.15 3.22 3.81 -79.60 -0.30 2.92 16 44 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 45 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -84.66 371.83 1.68 -82.98 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.05 Total: 25.64 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 8.10 Total: 21.87 kcal Atomic # 7 Polarization: -137.46 SS G_CDS: -7.05 Total: -144.51 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.44 Total: -35.47 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -84.66 1.68 -82.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734181980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.775 kcal (2) G-P(sol) polarization free energy of solvation -84.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds