Wall clock time and date at job start Wed Apr 1 2020 03:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46938 * 2 1 4 4 C 1.53001 * 109.47392 * 240.00018 * 2 1 3 5 5 C 1.52998 * 109.47234 * 174.99760 * 4 2 1 6 6 C 1.53002 * 109.46965 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.46929 * 180.02562 * 6 5 4 8 8 C 1.36933 * 120.00065 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99991 * 0.02562 * 8 7 6 10 10 C 1.38811 * 120.00241 * 180.02562 * 8 7 6 11 11 N 1.31614 * 120.00388 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 120.00340 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46656 * 0.02562 * 12 10 8 14 14 H 1.48495 * 109.47403 * 119.99739 * 12 10 8 15 15 H 1.48499 * 109.47030 * 240.00294 * 12 10 8 16 16 N 1.46497 * 109.47412 * 119.99617 * 2 1 3 17 17 C 1.34783 * 119.99758 * 275.00468 * 16 2 1 18 18 O 1.21556 * 120.00123 * 359.97438 * 17 16 2 19 19 C 1.47777 * 119.99749 * 179.97438 * 17 16 2 20 20 C 1.40613 * 119.79061 * 359.97438 * 19 17 16 21 21 C 1.35912 * 120.89178 * 179.97438 * 20 19 17 22 22 F 1.35107 * 119.97073 * 180.02562 * 21 20 19 23 23 C 1.40964 * 120.06223 * 359.97438 * 21 20 19 24 24 N 1.33624 * 120.83380 * 180.02562 * 23 21 20 25 25 C 1.31113 * 121.39648 * 180.02562 * 24 23 21 26 26 C 1.39321 * 121.76178 * 0.02562 * 25 24 23 27 27 C 1.36568 * 119.90335 * 359.97438 * 26 25 24 28 28 C 1.40902 * 118.15613 * 0.02562 * 27 26 25 29 29 C 1.38529 * 119.79236 * 179.97438 * 19 17 16 30 30 H 1.09005 * 109.47294 * 60.00416 * 1 2 3 31 31 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47207 * 300.00495 * 1 2 3 33 33 H 1.09003 * 109.46797 * 294.99729 * 4 2 1 34 34 H 1.09000 * 109.47298 * 54.99567 * 4 2 1 35 35 H 1.08999 * 109.47426 * 300.00176 * 5 4 2 36 36 H 1.09000 * 109.47135 * 59.99708 * 5 4 2 37 37 H 1.08996 * 109.47107 * 300.00208 * 6 5 4 38 38 H 1.08999 * 109.46683 * 60.00946 * 6 5 4 39 39 H 0.97003 * 120.00286 * 0.02562 * 7 6 5 40 40 H 0.97000 * 120.00802 * 180.02562 * 11 10 8 41 41 H 0.97000 * 120.00291 * 94.99486 * 16 2 1 42 42 H 1.07998 * 119.55053 * 0.02562 * 20 19 17 43 43 H 1.08005 * 119.11658 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.04997 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.92425 * 179.97438 * 27 26 25 46 46 H 1.08007 * 120.27229 * 0.27558 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 6 4.0749 -1.3350 -2.5626 7 7 5.5349 -1.2321 -2.6240 8 6 6.2188 -1.8064 -3.6621 9 1 5.6817 -2.3348 -4.4358 10 6 7.6023 -1.7093 -3.7200 11 7 8.2569 -1.0649 -2.7774 12 14 8.5351 -2.4921 -5.1365 13 1 7.5745 -3.1508 -6.0578 14 1 9.2874 -1.4447 -5.8728 15 1 9.4848 -3.5027 -4.6054 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0180 2.3571 18 8 1.8582 1.1615 2.4115 19 6 2.6391 -0.7147 3.5639 20 6 2.9714 -2.0793 3.4961 21 6 3.4265 -2.7420 4.5920 22 9 3.7408 -4.0531 4.5057 23 6 3.5720 -2.0623 5.8183 24 7 4.0186 -2.6985 6.9052 25 6 4.1577 -2.0773 8.0514 26 6 3.8479 -0.7267 8.1959 27 6 3.3863 -0.0157 7.1251 28 6 3.2382 -0.6870 5.8952 29 6 2.7702 -0.0192 4.7548 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.7517 -1.7715 -1.2055 34 1 1.6054 -0.2618 -2.1370 35 1 3.8532 0.4370 -1.3573 36 1 3.9995 -1.0726 -0.4259 37 1 3.7865 -2.3852 -2.5185 38 1 3.6403 -0.8758 -3.4505 39 1 6.0173 -0.7571 -1.9292 40 1 9.2236 -0.9967 -2.8180 41 1 2.2490 -1.6317 1.1527 42 1 2.8642 -2.6077 2.5603 43 1 4.5222 -2.6273 8.9064 44 1 3.9725 -0.2426 9.1533 45 1 3.1407 1.0319 7.2187 46 1 2.5101 1.0278 4.8053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734257630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:25 Heat of formation + Delta-G solvation = -26.149083 kcal Electronic energy + Delta-G solvation = -28754.821132 eV Core-core repulsion = 24558.691616 eV Total energy + Delta-G solvation = -4196.129516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -49.14278 -41.29769 -40.05931 -37.37645 -36.61901 -34.88881 -33.81247 -32.77940 -31.71510 -30.61253 -30.18783 -29.35838 -25.82405 -25.31157 -24.60742 -23.13127 -22.55801 -21.66753 -20.86207 -20.76331 -19.01279 -18.48448 -17.73950 -17.01567 -16.77483 -16.32928 -16.12479 -15.95345 -15.37235 -15.12159 -14.75895 -14.63230 -14.53977 -14.35349 -14.13725 -13.79490 -13.65788 -13.52153 -13.20833 -13.00543 -12.80636 -12.68723 -12.23230 -12.12283 -12.08265 -11.94803 -11.33126 -11.18952 -10.92643 -10.86617 -10.81613 -10.48583 -10.42153 -10.17124 -10.06449 -9.97824 -9.68717 -9.44550 -9.20559 -8.86069 -8.59461 -6.90253 -5.74777 -3.03557 -0.28986 0.07623 1.35586 1.91786 2.88439 2.98840 3.44350 3.47036 3.49541 3.52127 3.55610 3.76463 4.10756 4.18434 4.31015 4.38436 4.55698 4.56676 4.65739 4.77077 4.86156 4.99941 5.03503 5.11262 5.26767 5.38068 5.39506 5.44073 5.52307 5.58662 5.59395 5.59996 5.71304 5.76686 5.92928 5.93855 6.03450 6.08251 6.18552 6.23145 6.34661 6.38973 6.40593 6.86224 6.89621 7.29036 7.32338 7.71607 7.97532 8.44152 9.55037 10.14019 10.48144 11.48237 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009801 B = 0.002391 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.188616 B =11707.421557 C =13512.623707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.092 0.908 4 C -0.124 4.124 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.713 5.713 17 C 0.563 3.437 18 O -0.533 6.533 19 C -0.107 4.107 20 C -0.116 4.116 21 C 0.128 3.872 22 F -0.117 7.117 23 C 0.113 3.887 24 N -0.467 5.467 25 C 0.141 3.859 26 C -0.170 4.170 27 C -0.046 4.046 28 C -0.091 4.091 29 C -0.035 4.035 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.401 0.599 42 H 0.148 0.852 43 H 0.166 0.834 44 H 0.144 0.856 45 H 0.149 0.851 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.767 1.456 22.874 28.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.365 5.365 17 C 0.349 3.651 18 O -0.411 6.411 19 C -0.110 4.110 20 C -0.137 4.137 21 C 0.107 3.893 22 F -0.095 7.095 23 C -0.010 4.010 24 N -0.175 5.175 25 C -0.031 4.031 26 C -0.190 4.190 27 C -0.072 4.072 28 C -0.093 4.093 29 C -0.055 4.055 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.237 0.763 42 H 0.166 0.834 43 H 0.183 0.817 44 H 0.162 0.838 45 H 0.166 0.834 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.753 1.242 22.519 28.094 hybrid contribution 0.858 -0.191 -0.486 1.004 sum -15.895 1.051 22.033 27.188 Atomic orbital electron populations 1.22177 0.95212 1.02136 1.02550 1.21117 0.93745 0.97893 0.83553 0.89008 1.21868 0.96955 1.00834 0.96556 1.21746 0.93573 1.01544 0.99587 1.20646 0.86217 0.96440 0.94179 1.42388 1.00192 1.66248 1.29048 1.19283 0.89441 1.27046 1.01243 0.91158 1.24758 0.96471 1.01261 0.98667 1.69669 1.07126 1.47047 1.34378 0.86116 0.79909 0.78505 0.81675 1.20556 1.21860 1.21850 1.46043 1.66606 1.14251 1.09568 1.17979 0.77755 0.86415 0.82934 1.90784 1.50281 1.15143 1.84923 1.19704 1.03346 0.93044 0.94888 1.20930 0.99894 0.94310 0.98534 1.16867 1.00952 0.79059 0.92376 1.91570 1.90067 1.31332 1.96547 1.18903 0.98672 0.90773 0.92667 1.68060 1.12425 1.38207 0.98812 1.23114 0.92960 0.92138 0.94936 1.22003 1.00698 0.95845 1.00436 1.21577 0.94215 1.00546 0.90884 1.18585 1.01791 0.93465 0.95439 1.21477 0.93650 1.00600 0.89733 0.91353 0.92437 0.92254 0.91335 0.90051 0.91860 0.92092 0.96564 0.96471 0.78340 0.93570 0.76306 0.83440 0.81727 0.83780 0.83357 0.82921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.15 0.35 -1.15 16 2 C 0.14 1.53 2.57 -67.93 -0.17 1.35 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 4 C -0.12 -1.40 4.75 -26.73 -0.13 -1.53 16 5 C -0.13 -1.96 5.22 -26.73 -0.14 -2.10 16 6 C 0.15 3.05 6.26 -4.04 -0.03 3.02 16 7 N -0.73 -19.06 5.60 -59.91 -0.34 -19.40 16 8 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 9 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 12 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 N -0.71 -7.55 4.48 -54.77 -0.25 -7.79 16 17 C 0.56 6.81 7.73 -12.36 -0.10 6.71 16 18 O -0.53 -7.94 15.97 5.32 0.08 -7.85 16 19 C -0.11 -1.13 5.87 -104.99 -0.62 -1.75 16 20 C -0.12 -1.18 9.41 -39.52 -0.37 -1.55 16 21 C 0.13 1.49 7.29 -39.38 -0.29 1.21 16 22 F -0.12 -1.52 17.10 2.25 0.04 -1.48 16 23 C 0.11 1.28 6.61 -84.72 -0.56 0.72 16 24 N -0.47 -5.21 10.19 -10.88 -0.11 -5.32 16 25 C 0.14 1.03 11.15 -17.46 -0.19 0.83 16 26 C -0.17 -0.93 10.03 -39.78 -0.40 -1.33 16 27 C -0.05 -0.30 9.89 -39.18 -0.39 -0.69 16 28 C -0.09 -0.85 5.74 -106.82 -0.61 -1.47 16 29 C -0.03 -0.33 9.34 -38.74 -0.36 -0.70 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.49 7.67 -40.82 -0.31 10.17 16 40 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.40 3.55 6.59 -40.82 -0.27 3.28 16 42 H 0.15 1.21 6.35 -52.49 -0.33 0.87 16 43 H 0.17 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 45 H 0.15 0.54 8.06 -52.48 -0.42 0.12 16 46 H 0.15 1.30 7.61 -52.48 -0.40 0.90 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -35.84 393.10 -9.50 -45.33 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.31 Total: 6.91 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -4.25 Total: -5.95 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.03 Total: -60.61 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.08 Total: -7.85 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.84 -9.50 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734257630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.185 kcal (2) G-P(sol) polarization free energy of solvation -35.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds