Wall clock time and date at job start Wed Apr 1 2020 03:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 C 1.53009 * 109.47020 * 185.00095 * 4 2 1 6 6 C 1.52989 * 109.47113 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46924 * 179.97438 * 6 5 4 8 8 C 1.36940 * 120.00178 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99970 * 359.97438 * 8 7 6 10 10 C 1.38804 * 120.00219 * 180.02562 * 8 7 6 11 11 N 1.31614 * 120.00220 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00139 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47168 * 59.99477 * 12 10 8 14 14 H 1.48497 * 109.47444 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47057 * 299.99600 * 12 10 8 16 16 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 17 17 C 1.34781 * 119.99920 * 84.99933 * 16 2 1 18 18 O 1.21558 * 120.00059 * 0.02562 * 17 16 2 19 19 C 1.47773 * 119.99911 * 180.02562 * 17 16 2 20 20 C 1.40608 * 119.79109 * 359.97438 * 19 17 16 21 21 C 1.35912 * 120.89267 * 180.02562 * 20 19 17 22 22 F 1.35098 * 119.97268 * 179.97438 * 21 20 19 23 23 C 1.40964 * 120.06092 * 0.02562 * 21 20 19 24 24 N 1.33621 * 120.83107 * 179.97438 * 23 21 20 25 25 C 1.31116 * 121.39858 * 179.97438 * 24 23 21 26 26 C 1.39324 * 121.75933 * 0.04711 * 25 24 23 27 27 C 1.36570 * 119.90067 * 359.97297 * 26 25 24 28 28 C 1.40893 * 118.16231 * 0.02562 * 27 26 25 29 29 C 1.38542 * 119.78967 * 179.73175 * 19 17 16 30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 33 33 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 34 34 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 35 35 H 1.09001 * 109.46642 * 300.00256 * 5 4 2 36 36 H 1.08999 * 109.47112 * 60.00003 * 5 4 2 37 37 H 1.09001 * 109.47240 * 299.99479 * 6 5 4 38 38 H 1.08999 * 109.47464 * 59.99808 * 6 5 4 39 39 H 0.96996 * 119.99867 * 359.97438 * 7 6 5 40 40 H 0.97000 * 120.00320 * 180.02562 * 11 10 8 41 41 H 0.96998 * 120.00176 * 265.00572 * 16 2 1 42 42 H 1.07999 * 119.55548 * 0.02562 * 20 19 17 43 43 H 1.07994 * 119.11757 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.04574 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.91519 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.27146 * 359.97438 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3139 6 6 4.0748 -1.3350 2.5627 7 7 5.5349 -1.2321 2.6242 8 6 6.2188 -1.8073 3.6618 9 1 5.6817 -2.3364 4.4352 10 6 7.6021 -1.7094 3.7203 11 7 8.2567 -1.0642 2.7782 12 14 8.5351 -2.4946 5.1355 13 1 8.2781 -3.9572 5.1468 14 1 9.9898 -2.2494 4.9659 15 1 8.0790 -1.9019 6.4184 16 7 2.0184 -0.6906 -1.1961 17 6 2.1472 -0.0182 -2.3571 18 8 1.8585 1.1613 -2.4116 19 6 2.6393 -0.7150 -3.5637 20 6 2.9724 -2.0793 -3.4956 21 6 3.4276 -2.7421 -4.5914 22 9 3.7428 -4.0529 -4.5048 23 6 3.5722 -2.0627 -5.8180 24 7 4.0187 -2.6991 -6.9048 25 6 4.1570 -2.0782 -8.0514 26 6 3.8476 -0.7275 -8.1959 27 6 3.3864 -0.0163 -7.1251 28 6 3.2392 -0.6871 -5.8949 29 6 2.7646 -0.0210 -4.7563 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4261 36 1 3.8532 0.4370 1.3575 37 1 3.6402 -0.8757 3.4507 38 1 3.7864 -2.3852 2.5187 39 1 6.0173 -0.7572 1.9295 40 1 9.2234 -0.9961 2.8189 41 1 2.2491 -1.6317 -1.1525 42 1 2.8652 -2.6078 -2.5599 43 1 4.5207 -2.6286 -8.9065 44 1 3.9724 -0.2436 -9.1534 45 1 3.1420 1.0315 -7.2186 46 1 2.5039 1.0258 -4.8070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734257632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:33 Heat of formation + Delta-G solvation = -25.974515 kcal Electronic energy + Delta-G solvation = -28754.815933 eV Core-core repulsion = 24558.693987 eV Total energy + Delta-G solvation = -4196.121946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.43 seconds Orbital eigenvalues (eV) -49.14451 -41.29704 -40.05874 -37.37544 -36.61770 -34.88511 -33.81251 -32.77762 -31.71397 -30.61183 -30.18692 -29.35590 -25.82217 -25.31044 -24.60723 -23.12754 -22.55671 -21.66654 -20.85972 -20.76229 -19.01276 -18.48416 -17.73942 -17.01157 -16.77441 -16.32865 -16.12487 -15.95299 -15.37221 -15.12139 -14.75571 -14.63075 -14.53945 -14.35308 -14.13781 -13.79631 -13.65751 -13.51379 -13.20853 -13.00711 -12.80388 -12.68526 -12.23013 -12.12081 -12.08240 -11.94708 -11.32674 -11.18808 -10.92634 -10.83914 -10.80878 -10.49822 -10.42475 -10.17321 -10.06425 -10.02209 -9.67628 -9.44489 -9.20453 -8.84845 -8.59377 -6.90116 -5.74214 -3.03116 -0.28999 0.07646 1.35630 1.91807 2.88517 2.98883 3.45404 3.47073 3.49362 3.50819 3.55643 3.76512 4.10812 4.18482 4.31048 4.38488 4.55917 4.56754 4.65872 4.77181 4.86210 4.99989 5.03547 5.11391 5.26812 5.38111 5.39636 5.44112 5.52398 5.58878 5.59472 5.60084 5.71369 5.76797 5.93034 5.93922 6.03554 6.08399 6.18768 6.23193 6.34919 6.39079 6.40830 6.86439 6.89850 7.29107 7.32363 7.70856 7.97595 8.44806 9.55457 10.14410 10.48608 11.48695 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009800 B = 0.002391 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.355199 B =11706.414159 C =13512.496463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.092 0.908 4 C -0.124 4.124 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.713 5.713 17 C 0.563 3.437 18 O -0.533 6.533 19 C -0.106 4.106 20 C -0.116 4.116 21 C 0.128 3.872 22 F -0.117 7.117 23 C 0.113 3.887 24 N -0.467 5.467 25 C 0.141 3.859 26 C -0.170 4.170 27 C -0.046 4.046 28 C -0.091 4.091 29 C -0.035 4.035 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.383 0.617 40 H 0.256 0.744 41 H 0.401 0.599 42 H 0.148 0.852 43 H 0.166 0.834 44 H 0.144 0.856 45 H 0.149 0.851 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 1.467 -22.887 28.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.372 4.372 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.365 5.365 17 C 0.349 3.651 18 O -0.411 6.411 19 C -0.110 4.110 20 C -0.137 4.137 21 C 0.108 3.892 22 F -0.095 7.095 23 C -0.010 4.010 24 N -0.175 5.175 25 C -0.031 4.031 26 C -0.190 4.190 27 C -0.072 4.072 28 C -0.093 4.093 29 C -0.055 4.055 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.237 0.763 42 H 0.166 0.834 43 H 0.183 0.817 44 H 0.162 0.838 45 H 0.166 0.834 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.670 1.259 -22.539 28.062 hybrid contribution 0.839 -0.203 0.500 0.997 sum -15.831 1.056 -22.039 27.156 Atomic orbital electron populations 1.22178 0.95212 1.02134 1.02549 1.21117 0.93745 0.97892 0.83555 0.89007 1.21869 0.96958 1.00833 0.96554 1.21745 0.93571 1.01543 0.99587 1.20644 0.86225 0.96435 0.94176 1.42373 1.00173 1.66242 1.29067 1.19193 0.89444 1.27188 1.01342 0.91268 1.24753 0.96462 1.01209 0.98660 1.69650 1.07263 1.46927 1.34432 0.86260 0.78985 0.78990 0.81909 1.21265 1.21669 1.21263 1.46041 1.66602 1.14251 1.09568 1.17978 0.77751 0.86419 0.82937 1.90784 1.50285 1.15141 1.84923 1.19705 1.03350 0.93070 0.94850 1.20929 0.99900 0.94301 0.98541 1.16865 1.00948 0.79069 0.92367 1.91567 1.90040 1.31361 1.96544 1.18905 0.98693 0.90759 0.92665 1.68059 1.12420 1.38214 0.98810 1.23113 0.92962 0.92143 0.94930 1.22004 1.00693 0.95844 1.00438 1.21574 0.94227 1.00554 0.90869 1.18584 1.01755 0.93474 0.95460 1.21478 0.93650 1.00605 0.89732 0.92255 0.92437 0.91353 0.90051 0.91336 0.92093 0.91861 0.96480 0.96575 0.78337 0.93464 0.76307 0.83440 0.81730 0.83781 0.83360 0.82921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.16 0.35 -1.15 16 2 C 0.14 1.53 2.57 -67.93 -0.17 1.35 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 4 C -0.12 -1.40 4.75 -26.73 -0.13 -1.53 16 5 C -0.13 -1.97 5.22 -26.73 -0.14 -2.11 16 6 C 0.15 3.05 6.26 -4.05 -0.03 3.03 16 7 N -0.73 -19.08 5.60 -59.91 -0.34 -19.42 16 8 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 9 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 10 C -0.01 -0.44 5.50 -17.44 -0.10 -0.53 16 11 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 12 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 N -0.71 -7.55 4.48 -54.77 -0.25 -7.80 16 17 C 0.56 6.81 7.73 -12.36 -0.10 6.72 16 18 O -0.53 -7.94 15.97 5.32 0.08 -7.86 16 19 C -0.11 -1.13 5.87 -104.99 -0.62 -1.75 16 20 C -0.12 -1.18 9.41 -39.52 -0.37 -1.55 16 21 C 0.13 1.50 7.29 -39.38 -0.29 1.21 16 22 F -0.12 -1.52 17.10 2.25 0.04 -1.48 16 23 C 0.11 1.28 6.61 -84.72 -0.56 0.72 16 24 N -0.47 -5.21 10.19 -10.88 -0.11 -5.32 16 25 C 0.14 1.03 11.15 -17.45 -0.19 0.83 16 26 C -0.17 -0.93 10.03 -39.78 -0.40 -1.33 16 27 C -0.05 -0.30 9.89 -39.18 -0.39 -0.69 16 28 C -0.09 -0.85 5.74 -106.82 -0.61 -1.47 16 29 C -0.03 -0.34 9.34 -38.74 -0.36 -0.70 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 10.50 7.67 -40.82 -0.31 10.18 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 41 H 0.40 3.55 6.59 -40.82 -0.27 3.29 16 42 H 0.15 1.21 6.35 -52.49 -0.33 0.88 16 43 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 45 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 46 H 0.15 1.30 7.61 -52.49 -0.40 0.90 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -35.81 393.10 -9.50 -45.31 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.31 Total: 7.02 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -4.25 Total: -5.98 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.03 Total: -60.67 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.08 Total: -7.86 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.81 -9.50 -45.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734257632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.338 kcal (2) G-P(sol) polarization free energy of solvation -35.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.43 seconds