Wall clock time and date at job start Wed Apr 1 2020 03:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 C 1.53009 * 109.47020 * 185.00095 * 4 2 1 6 6 C 1.52989 * 109.47113 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46924 * 179.97438 * 6 5 4 8 8 C 1.36940 * 120.00178 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99970 * 359.97438 * 8 7 6 10 10 C 1.38804 * 120.00219 * 180.02562 * 8 7 6 11 11 N 1.31614 * 120.00220 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00139 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47168 * 59.99477 * 12 10 8 14 14 H 1.48497 * 109.47444 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47057 * 299.99600 * 12 10 8 16 16 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 17 17 C 1.34781 * 119.99920 * 84.99933 * 16 2 1 18 18 O 1.21558 * 120.00059 * 0.02562 * 17 16 2 19 19 C 1.47773 * 119.99911 * 180.02562 * 17 16 2 20 20 C 1.40608 * 119.79109 * 359.97438 * 19 17 16 21 21 C 1.35912 * 120.89267 * 180.02562 * 20 19 17 22 22 F 1.35098 * 119.97268 * 179.97438 * 21 20 19 23 23 C 1.40964 * 120.06092 * 0.02562 * 21 20 19 24 24 N 1.33621 * 120.83107 * 179.97438 * 23 21 20 25 25 C 1.31116 * 121.39858 * 179.97438 * 24 23 21 26 26 C 1.39324 * 121.75933 * 0.04711 * 25 24 23 27 27 C 1.36570 * 119.90067 * 359.97297 * 26 25 24 28 28 C 1.40893 * 118.16231 * 0.02562 * 27 26 25 29 29 C 1.38542 * 119.78967 * 179.73175 * 19 17 16 30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 33 33 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 34 34 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 35 35 H 1.09001 * 109.46642 * 300.00256 * 5 4 2 36 36 H 1.08999 * 109.47112 * 60.00003 * 5 4 2 37 37 H 1.09001 * 109.47240 * 299.99479 * 6 5 4 38 38 H 1.08999 * 109.47464 * 59.99808 * 6 5 4 39 39 H 0.96996 * 119.99867 * 359.97438 * 7 6 5 40 40 H 0.97000 * 120.00320 * 180.02562 * 11 10 8 41 41 H 0.96998 * 120.00176 * 265.00572 * 16 2 1 42 42 H 1.07999 * 119.55548 * 0.02562 * 20 19 17 43 43 H 1.07994 * 119.11757 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.04574 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.91519 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.27146 * 359.97438 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3139 6 6 4.0748 -1.3350 2.5627 7 7 5.5349 -1.2321 2.6242 8 6 6.2188 -1.8073 3.6618 9 1 5.6817 -2.3364 4.4352 10 6 7.6021 -1.7094 3.7203 11 7 8.2567 -1.0642 2.7782 12 14 8.5351 -2.4946 5.1355 13 1 8.2781 -3.9572 5.1468 14 1 9.9898 -2.2494 4.9659 15 1 8.0790 -1.9019 6.4184 16 7 2.0184 -0.6906 -1.1961 17 6 2.1472 -0.0182 -2.3571 18 8 1.8585 1.1613 -2.4116 19 6 2.6393 -0.7150 -3.5637 20 6 2.9724 -2.0793 -3.4956 21 6 3.4276 -2.7421 -4.5914 22 9 3.7428 -4.0529 -4.5048 23 6 3.5722 -2.0627 -5.8180 24 7 4.0187 -2.6991 -6.9048 25 6 4.1570 -2.0782 -8.0514 26 6 3.8476 -0.7275 -8.1959 27 6 3.3864 -0.0163 -7.1251 28 6 3.2392 -0.6871 -5.8949 29 6 2.7646 -0.0210 -4.7563 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4261 36 1 3.8532 0.4370 1.3575 37 1 3.6402 -0.8757 3.4507 38 1 3.7864 -2.3852 2.5187 39 1 6.0173 -0.7572 1.9295 40 1 9.2234 -0.9961 2.8189 41 1 2.2491 -1.6317 -1.1525 42 1 2.8652 -2.6078 -2.5599 43 1 4.5207 -2.6286 -8.9065 44 1 3.9724 -0.2436 -9.1534 45 1 3.1420 1.0315 -7.2186 46 1 2.5039 1.0258 -4.8070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734257632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:31 Heat of formation + Delta-G solvation = -49.230173 kcal Electronic energy + Delta-G solvation = -28755.824374 eV Core-core repulsion = 24558.693987 eV Total energy + Delta-G solvation = -4197.130387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -50.03561 -42.00018 -40.92451 -38.25952 -37.62360 -36.53651 -34.48622 -34.20059 -32.95346 -31.67349 -30.99037 -30.61777 -27.25029 -26.17618 -25.27408 -24.77437 -23.35823 -22.66712 -22.24401 -21.69624 -19.77157 -19.24847 -19.11379 -18.46787 -17.61724 -17.19628 -16.98204 -16.68289 -16.60713 -16.09965 -16.05019 -15.83042 -15.46179 -15.37609 -15.18340 -15.08299 -15.00568 -14.44541 -14.19391 -13.89343 -13.86921 -13.47547 -13.41580 -13.18307 -13.01031 -12.76673 -12.74514 -12.72057 -12.38966 -12.28223 -12.08709 -11.86471 -11.72575 -11.55909 -11.50171 -11.14136 -10.93037 -10.68327 -10.23752 -10.01514 -9.34551 -9.01520 -7.96518 -5.25972 -0.98140 -0.59770 0.69672 1.16567 1.45784 1.49481 1.55638 2.03004 2.18296 2.55066 2.76758 2.86382 3.09926 3.37011 3.38426 3.53125 3.60781 3.67613 3.82897 3.91595 3.96858 4.09036 4.12865 4.29045 4.33510 4.41525 4.42985 4.54833 4.58763 4.68077 4.74677 4.83339 4.83953 4.86803 4.91185 4.92358 5.01026 5.11008 5.14872 5.31862 5.33153 5.36237 5.42749 5.49671 5.53938 5.60255 6.25864 6.42201 6.71384 7.07956 7.31300 8.08919 8.30628 9.27111 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009800 B = 0.002391 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.355199 B =11706.414159 C =13512.496463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.114 4.114 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.248 4.248 9 H 0.077 0.923 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.276 1.276 14 H -0.295 1.295 15 H -0.276 1.276 16 N -0.708 5.708 17 C 0.563 3.437 18 O -0.567 6.567 19 C -0.126 4.126 20 C -0.108 4.108 21 C 0.097 3.903 22 F -0.133 7.133 23 C 0.095 3.905 24 N -0.513 5.513 25 C 0.142 3.858 26 C -0.159 4.159 27 C -0.046 4.046 28 C -0.104 4.104 29 C -0.023 4.023 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.021 0.979 38 H 0.025 0.975 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.410 0.590 42 H 0.161 0.839 43 H 0.195 0.805 44 H 0.187 0.813 45 H 0.181 0.819 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.814 1.568 -23.767 29.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.152 4.152 6 C 0.023 3.977 7 N -0.394 5.394 8 C -0.380 4.380 9 H 0.095 0.905 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.202 1.202 14 H -0.222 1.222 15 H -0.202 1.202 16 N -0.359 5.359 17 C 0.351 3.649 18 O -0.448 6.448 19 C -0.129 4.129 20 C -0.129 4.129 21 C 0.077 3.923 22 F -0.111 7.111 23 C -0.028 4.028 24 N -0.222 5.222 25 C -0.029 4.029 26 C -0.178 4.178 27 C -0.071 4.071 28 C -0.106 4.106 29 C -0.043 4.043 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.043 0.957 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.247 0.753 42 H 0.178 0.822 43 H 0.212 0.788 44 H 0.204 0.796 45 H 0.198 0.802 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.833 1.327 -23.400 29.451 hybrid contribution 1.157 -0.203 0.620 1.328 sum -16.677 1.124 -22.780 28.254 Atomic orbital electron populations 1.22106 0.93473 1.03095 1.02621 1.21060 0.94991 0.96732 0.83298 0.91050 1.21777 0.93487 1.02298 0.97321 1.21608 0.96561 0.99838 0.97220 1.20868 0.83121 0.97392 0.96312 1.42656 1.02590 1.65913 1.28192 1.19645 0.90033 1.26441 1.01845 0.90480 1.25635 0.97560 1.02447 1.01482 1.69820 1.07093 1.48825 1.36538 0.85175 0.77040 0.78389 0.78955 1.20220 1.22162 1.20197 1.46036 1.66034 1.14647 1.09220 1.18159 0.77189 0.86043 0.83511 1.90758 1.52038 1.16463 1.85493 1.19625 1.05168 0.93296 0.94835 1.20987 0.99007 0.94153 0.98712 1.17142 1.02877 0.78795 0.93477 1.91510 1.90506 1.32408 1.96695 1.19099 0.99204 0.91687 0.92786 1.68072 1.14550 1.39610 0.99952 1.23819 0.91107 0.93439 0.94543 1.22451 0.98602 0.94903 1.01817 1.22030 0.93314 1.02043 0.89750 1.18786 1.02189 0.92949 0.96693 1.21690 0.92134 1.00954 0.89519 0.93437 0.90994 0.90041 0.88736 0.89422 0.92597 0.93316 0.96078 0.95746 0.79741 0.94006 0.75282 0.82159 0.78781 0.79605 0.80179 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.48 71.98 0.68 -1.93 16 2 C 0.14 2.98 2.57 44.99 0.12 3.09 16 3 H 0.07 1.81 7.58 -2.39 -0.02 1.80 16 4 C -0.11 -2.31 4.75 30.60 0.15 -2.16 16 5 C -0.11 -3.50 5.22 30.59 0.16 -3.34 16 6 C 0.15 5.86 6.26 86.38 0.54 6.40 16 7 N -0.75 -39.33 5.60 -343.46 -1.92 -41.26 16 8 C -0.25 -14.19 9.99 84.03 0.84 -13.35 16 9 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 10 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 11 N -0.97 -61.14 13.06 21.65 0.28 -60.86 16 12 Si 0.98 46.89 29.55 68.60 2.03 48.91 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 N -0.71 -14.75 4.48 -445.48 -2.00 -16.74 16 17 C 0.56 13.80 7.73 86.76 0.67 14.47 16 18 O -0.57 -17.15 15.97 -3.90 -0.06 -17.21 16 19 C -0.13 -2.74 5.87 -20.10 -0.12 -2.86 16 20 C -0.11 -2.29 9.41 22.31 0.21 -2.08 16 21 C 0.10 2.41 7.29 22.40 0.16 2.57 16 22 F -0.13 -3.69 17.10 44.97 0.77 -2.92 16 23 C 0.09 2.20 6.61 40.40 0.27 2.47 16 24 N -0.51 -11.43 10.19 -188.32 -1.92 -13.35 16 25 C 0.14 1.81 11.15 85.06 0.95 2.76 16 26 C -0.16 -1.22 10.03 22.14 0.22 -1.00 16 27 C -0.05 -0.48 9.89 22.53 0.22 -0.26 16 28 C -0.10 -1.89 5.74 -21.29 -0.12 -2.01 16 29 C -0.02 -0.44 9.34 22.82 0.21 -0.23 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.06 1.76 7.75 -2.39 -0.02 1.74 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.37 20.85 7.67 -92.71 -0.71 20.14 16 40 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.41 7.01 6.59 -92.71 -0.61 6.40 16 42 H 0.16 2.72 6.35 -2.91 -0.02 2.70 16 43 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 44 H 0.19 -0.13 8.06 -2.91 -0.02 -0.15 16 45 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 46 H 0.16 2.67 7.61 -2.91 -0.02 2.65 16 Total: -1.00 -79.80 393.10 2.51 -77.30 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.30 Total: 27.78 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 5.63 Total: -1.65 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -5.56 Total: -132.21 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.06 Total: -17.21 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.77 Total: -2.92 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -79.80 2.51 -77.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734257632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.066 kcal (2) G-P(sol) polarization free energy of solvation -79.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds