Wall clock time and date at job start Wed Apr 1 2020 05:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46927 * 2 1 4 4 C 1.52995 * 109.47159 * 240.00084 * 2 1 3 5 5 N 1.46504 * 109.47334 * 185.00349 * 4 2 1 6 6 C 1.34769 * 120.00153 * 180.02562 * 5 4 2 7 7 O 1.21789 * 120.00153 * 359.97438 * 6 5 4 8 8 C 1.41698 * 120.00139 * 179.97438 * 6 5 4 9 9 C 1.39183 * 125.88023 * 180.02562 * 8 6 5 10 10 C 1.38081 * 107.68030 * 179.97438 * 9 8 6 11 11 C 1.39505 * 107.56928 * 0.02562 * 10 9 8 12 12 C 1.40617 * 132.41509 * 180.02562 * 11 10 9 13 13 C 1.36295 * 119.15921 * 179.97438 * 12 11 10 14 14 C 1.39966 * 120.04021 * 0.02562 * 13 12 11 15 15 N 1.30643 * 120.98840 * 0.02562 * 14 13 12 16 16 N 1.37155 * 108.20402 * 359.97214 * 11 10 9 17 17 N 1.46906 * 109.46851 * 120.00067 * 2 1 3 18 18 C 1.46897 * 111.00036 * 275.00141 * 17 2 1 19 19 C 1.50698 * 109.47026 * 180.02562 * 18 17 2 20 20 O 1.21286 * 120.00093 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99955 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00220 * 179.97438 * 21 19 18 23 23 H 1.08008 * 119.99727 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00205 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00035 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99906 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.46903 * 59.99898 * 26 24 22 28 28 H 1.48500 * 109.46817 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46852 * 299.99717 * 26 24 22 30 30 H 1.09001 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46970 * 300.00070 * 1 2 3 32 32 H 1.09007 * 109.46799 * 59.99796 * 1 2 3 33 33 H 1.08995 * 109.47157 * 65.00090 * 4 2 1 34 34 H 1.09000 * 109.47510 * 305.00157 * 4 2 1 35 35 H 0.96998 * 119.99683 * 359.97438 * 5 4 2 36 36 H 1.08005 * 126.15689 * 359.95637 * 9 8 6 37 37 H 1.08006 * 126.21443 * 180.02562 * 10 9 8 38 38 H 1.08008 * 120.41772 * 0.21145 * 12 11 10 39 39 H 1.08002 * 119.97559 * 180.02562 * 13 12 11 40 40 H 1.08002 * 119.50096 * 179.97438 * 14 13 12 41 41 H 1.00902 * 110.99289 * 151.04518 * 17 2 1 42 42 H 1.09001 * 109.46887 * 299.99809 * 18 17 2 43 43 H 1.08998 * 109.47425 * 60.00048 * 18 17 2 44 44 H 0.97006 * 120.00142 * 0.02562 * 21 19 18 45 45 H 0.97002 * 119.99888 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1731 -1.4283 -2.1911 7 8 3.5675 -1.8851 -3.1439 8 6 5.5853 -1.5296 -2.1346 9 6 6.3997 -2.1224 -3.0951 10 6 7.7065 -2.0113 -2.6633 11 6 7.6895 -1.3491 -1.4355 12 6 8.7126 -0.9669 -0.5498 13 6 8.3850 -0.3164 0.6022 14 6 7.0445 -0.0369 0.8921 15 7 6.0910 -0.3912 0.0723 16 7 6.3858 -1.0595 -1.1230 17 7 2.0197 -0.6925 1.1995 18 6 2.0824 0.2225 2.3470 19 6 2.5884 -0.5217 3.5558 20 8 2.8687 -1.6986 3.4700 21 7 2.7294 0.1206 4.7322 22 6 3.1892 -0.5564 5.8320 23 1 3.4381 -1.6047 5.7558 24 6 3.3342 0.1056 7.0451 25 7 3.0310 1.3809 7.1379 26 14 3.9614 -0.8168 8.5435 27 1 5.3176 -1.3527 8.2629 28 1 4.0254 0.1084 9.7033 29 1 3.0403 -1.9392 8.8552 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -0.1583 -2.1369 34 1 1.6054 -1.7198 -1.2952 35 1 3.9824 -0.4623 -0.4319 36 1 6.0689 -2.5862 -4.0127 37 1 8.5828 -2.3715 -3.1819 38 1 9.7453 -1.1827 -0.7813 39 1 9.1602 -0.0164 1.2917 40 1 6.7947 0.4787 1.8077 41 1 2.9173 -1.1206 1.0287 42 1 2.7588 1.0461 2.1183 43 1 1.0870 0.6162 2.5526 44 1 2.5049 1.0618 4.8009 45 1 3.1318 1.8430 7.9848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752902572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:38 Heat of formation + Delta-G solvation = 42.569660 kcal Electronic energy + Delta-G solvation = -29866.244583 eV Core-core repulsion = 25693.014897 eV Total energy + Delta-G solvation = -4173.229686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.25748 -39.65807 -38.43502 -37.52919 -36.79040 -34.21884 -33.89598 -33.35017 -31.34254 -30.86632 -30.70704 -29.28301 -26.76163 -26.16225 -24.77223 -23.95953 -23.33686 -21.50959 -20.69463 -20.45717 -19.36549 -18.70004 -17.91433 -17.48935 -16.50706 -16.28513 -16.17885 -15.91237 -15.81203 -15.43842 -15.19892 -14.58439 -14.41931 -14.25842 -13.93153 -13.88071 -13.51678 -13.34977 -13.06471 -12.71934 -12.62231 -12.53277 -12.50600 -12.17139 -11.88287 -11.71235 -11.65264 -11.41524 -11.09102 -11.09052 -10.89993 -10.80868 -10.48046 -10.25111 -10.17536 -9.53944 -9.22430 -9.07835 -8.48135 -8.11404 -8.04668 -7.99735 -6.45599 -3.86504 0.13921 0.69835 1.63019 2.04122 2.94628 3.16061 3.19209 3.22315 3.26644 3.35447 3.86528 3.87777 4.05094 4.19964 4.28539 4.32302 4.58991 4.71918 4.85770 4.98086 5.00830 5.11748 5.19862 5.24299 5.33648 5.35489 5.46369 5.58187 5.63914 5.70793 5.73795 5.80059 5.82487 5.90200 5.96769 6.02169 6.20779 6.29874 6.30885 6.42238 6.47868 7.18719 7.25289 7.49821 7.51035 7.60494 8.02307 8.14862 8.57811 9.14148 9.50454 10.02460 10.71991 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009696 B = 0.003226 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.968782 B = 8678.531972 C =11006.145578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 H 0.047 0.953 4 C 0.117 3.883 5 N -0.727 5.727 6 C 0.590 3.410 7 O -0.540 6.540 8 C -0.032 4.032 9 C -0.078 4.078 10 C -0.175 4.175 11 C 0.008 3.992 12 C -0.014 4.014 13 C -0.193 4.193 14 C 0.149 3.851 15 N -0.282 5.282 16 N -0.233 5.233 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.441 3.559 20 O -0.581 6.581 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.407 0.593 36 H 0.166 0.834 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.202 0.798 41 H 0.348 0.652 42 H 0.042 0.958 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.881 2.075 -16.822 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.039 4.039 3 H 0.065 0.935 4 C -0.007 4.007 5 N -0.382 5.382 6 C 0.379 3.621 7 O -0.418 6.418 8 C -0.148 4.148 9 C -0.103 4.103 10 C -0.201 4.201 11 C -0.104 4.104 12 C -0.040 4.040 13 C -0.216 4.216 14 C -0.042 4.042 15 N -0.092 5.092 16 N 0.003 4.997 17 N -0.299 5.299 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.465 6.465 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.246 0.754 36 H 0.183 0.817 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.172 0.828 40 H 0.218 0.782 41 H 0.170 0.830 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.792 1.042 -17.044 18.770 hybrid contribution 2.052 0.936 1.312 2.609 sum 9.844 1.978 -15.732 18.663 Atomic orbital electron populations 1.21734 0.93279 1.02991 1.01525 1.21810 0.97118 0.95888 0.89104 0.93475 1.21624 0.79230 1.02117 0.97680 1.46199 1.08353 1.59611 1.24078 1.15676 0.85016 0.78493 0.82889 1.90855 1.68790 1.48928 1.33270 1.19488 0.91495 1.12868 0.90969 1.21319 0.91420 0.99071 0.98495 1.21051 0.98149 1.06032 0.94839 1.19466 0.84815 1.07131 0.99034 1.20963 0.99169 0.92528 0.91358 1.21515 0.97304 1.03441 0.99338 1.24162 0.90294 0.92578 0.97146 1.75474 1.27879 1.12580 0.93277 1.45834 1.06562 1.35077 1.12181 1.60154 1.34927 1.32102 1.02701 1.21753 1.01412 0.93822 0.91339 1.19796 0.84938 0.88193 0.84436 1.90535 1.55135 1.16093 1.84723 1.41848 1.57874 1.12401 1.07914 1.19646 1.40035 0.96382 0.86863 0.88044 1.25243 0.97680 0.95761 0.99152 1.69602 1.48637 1.08832 1.27259 0.85939 0.79400 0.78896 0.80116 1.19962 1.20960 1.19868 0.91462 0.91981 0.92459 0.90695 0.90166 0.75354 0.81662 0.82526 0.82575 0.82825 0.78168 0.83032 0.93979 0.89401 0.77490 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.41 37.16 0.35 -1.26 16 2 C 0.07 0.94 2.81 -67.71 -0.19 0.75 16 3 H 0.05 0.59 7.80 -51.93 -0.41 0.18 16 4 C 0.12 1.59 5.31 -4.04 -0.02 1.57 16 5 N -0.73 -10.76 4.98 -63.20 -0.31 -11.07 16 6 C 0.59 9.38 7.60 -14.94 -0.11 9.27 16 7 O -0.54 -9.61 16.79 5.11 0.09 -9.53 16 8 C -0.03 -0.45 6.84 -83.74 -0.57 -1.03 16 9 C -0.08 -0.91 10.49 -39.29 -0.41 -1.33 16 10 C -0.17 -1.70 10.92 -39.17 -0.43 -2.13 16 11 C 0.01 0.09 6.80 -84.11 -0.57 -0.49 16 12 C -0.01 -0.11 10.11 -39.38 -0.40 -0.50 16 13 C -0.19 -1.46 10.04 -39.63 -0.40 -1.86 16 14 C 0.15 1.49 11.29 -17.41 -0.20 1.29 16 15 N -0.28 -3.70 9.68 30.61 0.30 -3.40 16 16 N -0.23 -3.13 4.01 -8.28 -0.03 -3.16 16 17 N -0.66 -11.20 5.93 -107.99 -0.64 -11.84 16 18 C 0.05 0.87 5.97 -4.98 -0.03 0.84 16 19 C 0.44 10.28 7.82 -10.99 -0.09 10.19 16 20 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 21 N -0.56 -13.92 5.29 -10.96 -0.06 -13.97 16 22 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 23 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -23.93 13.05 55.50 0.72 -23.21 16 26 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 6.04 4.97 -40.82 -0.20 5.84 16 36 H 0.17 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.16 0.65 8.06 -52.48 -0.42 0.22 16 39 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.35 6.36 6.41 -39.29 -0.25 6.11 16 42 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 43 H 0.09 1.43 7.44 -51.93 -0.39 1.05 16 44 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 45 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -35.00 385.31 -8.07 -43.07 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -5.69 Total: 19.89 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -3.31 Total: 7.51 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -0.03 Total: -66.67 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: 0.17 Total: -25.20 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.00 -8.07 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752902572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.635 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds