Wall clock time and date at job start Wed Apr 1 2020 05:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46927 * 2 1 4 4 C 1.52995 * 109.47159 * 240.00084 * 2 1 3 5 5 N 1.46504 * 109.47334 * 185.00349 * 4 2 1 6 6 C 1.34769 * 120.00153 * 180.02562 * 5 4 2 7 7 O 1.21789 * 120.00153 * 359.97438 * 6 5 4 8 8 C 1.41698 * 120.00139 * 179.97438 * 6 5 4 9 9 C 1.39183 * 125.88023 * 180.02562 * 8 6 5 10 10 C 1.38081 * 107.68030 * 179.97438 * 9 8 6 11 11 C 1.39505 * 107.56928 * 0.02562 * 10 9 8 12 12 C 1.40617 * 132.41509 * 180.02562 * 11 10 9 13 13 C 1.36295 * 119.15921 * 179.97438 * 12 11 10 14 14 C 1.39966 * 120.04021 * 0.02562 * 13 12 11 15 15 N 1.30643 * 120.98840 * 0.02562 * 14 13 12 16 16 N 1.37155 * 108.20402 * 359.97214 * 11 10 9 17 17 N 1.46906 * 109.46851 * 120.00067 * 2 1 3 18 18 C 1.46897 * 111.00036 * 275.00141 * 17 2 1 19 19 C 1.50698 * 109.47026 * 180.02562 * 18 17 2 20 20 O 1.21286 * 120.00093 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99955 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00220 * 179.97438 * 21 19 18 23 23 H 1.08008 * 119.99727 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00205 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00035 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99906 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.46903 * 59.99898 * 26 24 22 28 28 H 1.48500 * 109.46817 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46852 * 299.99717 * 26 24 22 30 30 H 1.09001 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46970 * 300.00070 * 1 2 3 32 32 H 1.09007 * 109.46799 * 59.99796 * 1 2 3 33 33 H 1.08995 * 109.47157 * 65.00090 * 4 2 1 34 34 H 1.09000 * 109.47510 * 305.00157 * 4 2 1 35 35 H 0.96998 * 119.99683 * 359.97438 * 5 4 2 36 36 H 1.08005 * 126.15689 * 359.95637 * 9 8 6 37 37 H 1.08006 * 126.21443 * 180.02562 * 10 9 8 38 38 H 1.08008 * 120.41772 * 0.21145 * 12 11 10 39 39 H 1.08002 * 119.97559 * 180.02562 * 13 12 11 40 40 H 1.08002 * 119.50096 * 179.97438 * 14 13 12 41 41 H 1.00902 * 110.99289 * 151.04518 * 17 2 1 42 42 H 1.09001 * 109.46887 * 299.99809 * 18 17 2 43 43 H 1.08998 * 109.47425 * 60.00048 * 18 17 2 44 44 H 0.97006 * 120.00142 * 0.02562 * 21 19 18 45 45 H 0.97002 * 119.99888 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1731 -1.4283 -2.1911 7 8 3.5675 -1.8851 -3.1439 8 6 5.5853 -1.5296 -2.1346 9 6 6.3997 -2.1224 -3.0951 10 6 7.7065 -2.0113 -2.6633 11 6 7.6895 -1.3491 -1.4355 12 6 8.7126 -0.9669 -0.5498 13 6 8.3850 -0.3164 0.6022 14 6 7.0445 -0.0369 0.8921 15 7 6.0910 -0.3912 0.0723 16 7 6.3858 -1.0595 -1.1230 17 7 2.0197 -0.6925 1.1995 18 6 2.0824 0.2225 2.3470 19 6 2.5884 -0.5217 3.5558 20 8 2.8687 -1.6986 3.4700 21 7 2.7294 0.1206 4.7322 22 6 3.1892 -0.5564 5.8320 23 1 3.4381 -1.6047 5.7558 24 6 3.3342 0.1056 7.0451 25 7 3.0310 1.3809 7.1379 26 14 3.9614 -0.8168 8.5435 27 1 5.3176 -1.3527 8.2629 28 1 4.0254 0.1084 9.7033 29 1 3.0403 -1.9392 8.8552 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -0.1583 -2.1369 34 1 1.6054 -1.7198 -1.2952 35 1 3.9824 -0.4623 -0.4319 36 1 6.0689 -2.5862 -4.0127 37 1 8.5828 -2.3715 -3.1819 38 1 9.7453 -1.1827 -0.7813 39 1 9.1602 -0.0164 1.2917 40 1 6.7947 0.4787 1.8077 41 1 2.9173 -1.1206 1.0287 42 1 2.7588 1.0461 2.1183 43 1 1.0870 0.6162 2.5526 44 1 2.5049 1.0618 4.8009 45 1 3.1318 1.8430 7.9848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752902572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:37 Heat of formation + Delta-G solvation = 16.039037 kcal Electronic energy + Delta-G solvation = -29867.395037 eV Core-core repulsion = 25693.014897 eV Total energy + Delta-G solvation = -4174.380140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.09011 -40.79985 -40.16442 -38.51310 -37.95951 -35.99530 -35.18944 -34.26238 -33.28486 -32.16435 -31.52273 -30.15318 -28.17629 -27.40955 -25.88116 -25.40504 -24.21927 -22.36015 -21.78993 -21.45091 -21.13911 -19.96761 -19.67422 -18.26703 -17.92440 -17.28684 -17.13119 -17.08378 -16.77182 -16.70886 -16.52092 -16.32574 -15.83232 -15.49438 -15.42208 -14.98802 -14.61705 -14.37579 -14.17272 -13.84601 -13.73343 -13.69541 -13.49199 -13.32311 -13.20360 -13.07293 -12.95461 -12.83199 -12.62004 -12.42840 -12.12692 -11.95480 -11.79184 -11.64090 -11.51092 -11.34505 -10.37044 -10.31952 -10.02116 -10.00957 -9.45026 -8.86834 -8.46549 -5.95251 -0.55307 -0.16013 0.80978 1.17756 1.39127 1.42249 1.52465 2.03409 2.11001 2.19880 2.28502 2.32979 2.83144 3.10549 3.20505 3.43069 3.53972 3.62442 3.72013 3.90852 3.95842 4.09624 4.20355 4.29394 4.34490 4.40837 4.41397 4.53577 4.55179 4.69482 4.72687 4.75132 4.89267 4.95342 4.99081 5.07603 5.16579 5.22737 5.39938 5.41049 5.56772 5.67262 5.84504 6.06326 6.22012 6.28210 6.52909 6.59942 7.00210 7.12429 7.55103 8.10989 8.70368 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009696 B = 0.003226 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.968782 B = 8678.531972 C =11006.145578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.077 3.923 3 H 0.063 0.937 4 C 0.119 3.881 5 N -0.728 5.728 6 C 0.585 3.415 7 O -0.574 6.574 8 C -0.082 4.082 9 C -0.082 4.082 10 C -0.167 4.167 11 C 0.000 4.000 12 C -0.011 4.011 13 C -0.187 4.187 14 C 0.142 3.858 15 N -0.326 5.326 16 N -0.245 5.245 17 N -0.679 5.679 18 C 0.063 3.937 19 C 0.439 3.561 20 O -0.624 6.624 21 N -0.568 5.568 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.918 5.918 26 Si 0.990 3.010 27 H -0.269 1.269 28 H -0.270 1.270 29 H -0.276 1.276 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.408 0.592 36 H 0.174 0.826 37 H 0.195 0.805 38 H 0.201 0.799 39 H 0.192 0.808 40 H 0.216 0.784 41 H 0.338 0.662 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.928 3.163 -16.421 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.032 4.032 3 H 0.081 0.919 4 C -0.005 4.005 5 N -0.382 5.382 6 C 0.375 3.625 7 O -0.456 6.456 8 C -0.197 4.197 9 C -0.107 4.107 10 C -0.192 4.192 11 C -0.113 4.113 12 C -0.037 4.037 13 C -0.209 4.209 14 C -0.047 4.047 15 N -0.137 5.137 16 N -0.008 5.008 17 N -0.313 5.313 18 C -0.069 4.069 19 C 0.226 3.774 20 O -0.510 6.510 21 N -0.205 5.205 22 C -0.463 4.463 23 H 0.095 0.905 24 C -0.208 4.208 25 N -0.559 5.559 26 Si 0.813 3.187 27 H -0.194 1.194 28 H -0.194 1.194 29 H -0.202 1.202 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.247 0.753 36 H 0.191 0.809 37 H 0.212 0.788 38 H 0.218 0.782 39 H 0.209 0.791 40 H 0.232 0.768 41 H 0.158 0.842 42 H 0.086 0.914 43 H 0.125 0.875 44 H 0.231 0.769 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.817 2.177 -16.637 19.440 hybrid contribution 1.513 0.629 1.229 2.048 sum 11.330 2.806 -15.409 19.330 Atomic orbital electron populations 1.21738 0.91836 1.02741 1.02895 1.21884 0.98034 0.96069 0.87253 0.91909 1.21652 0.78792 1.01563 0.98452 1.46251 1.08727 1.59367 1.23855 1.15997 0.85955 0.77968 0.82532 1.90804 1.69684 1.50649 1.34429 1.19496 0.91189 1.16126 0.92934 1.21600 0.92252 0.98546 0.98351 1.21494 0.98369 1.04998 0.94354 1.20216 0.84720 1.06522 0.99879 1.21531 1.00354 0.91416 0.90438 1.21952 0.96853 1.02291 0.99837 1.24700 0.91427 0.91662 0.96949 1.75423 1.29742 1.14421 0.94124 1.45881 1.07341 1.35400 1.12161 1.60191 1.34438 1.32818 1.03876 1.21631 1.02602 0.93604 0.89053 1.20746 0.83357 0.87890 0.85382 1.90505 1.56678 1.18283 1.85574 1.41871 1.58134 1.12523 1.08002 1.19591 1.42279 0.95851 0.88596 0.90541 1.25974 0.97174 0.96557 1.01141 1.69658 1.48395 1.09602 1.28200 0.85041 0.78809 0.77805 0.77011 1.19408 1.19438 1.20158 0.92558 0.91867 0.89787 0.89348 0.91712 0.75330 0.80874 0.78763 0.78235 0.79092 0.76760 0.84238 0.91438 0.87459 0.76918 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.41 71.98 0.68 -2.29 16 2 C 0.08 2.00 2.81 44.91 0.13 2.12 16 3 H 0.06 1.46 7.80 -2.39 -0.02 1.44 16 4 C 0.12 3.30 5.31 86.38 0.46 3.76 16 5 N -0.73 -22.58 4.98 -472.05 -2.35 -24.93 16 6 C 0.58 19.73 7.60 85.10 0.65 20.38 16 7 O -0.57 -21.70 16.79 -4.63 -0.08 -21.77 16 8 C -0.08 -2.46 6.84 39.37 0.27 -2.19 16 9 C -0.08 -1.94 10.49 22.46 0.24 -1.71 16 10 C -0.17 -2.97 10.92 22.54 0.25 -2.72 16 11 C 0.00 0.00 6.80 39.20 0.27 0.26 16 12 C -0.01 -0.14 10.11 22.40 0.23 0.09 16 13 C -0.19 -2.29 10.04 22.24 0.22 -2.07 16 14 C 0.14 2.71 11.29 85.29 0.96 3.67 16 15 N -0.33 -8.69 9.68 -57.06 -0.55 -9.24 16 16 N -0.24 -6.65 4.01 -180.12 -0.72 -7.37 16 17 N -0.68 -23.02 5.93 -495.58 -2.94 -25.96 16 18 C 0.06 2.19 5.97 85.56 0.51 2.70 16 19 C 0.44 20.75 7.82 87.66 0.69 21.43 16 20 O -0.62 -34.93 15.78 -3.05 -0.05 -34.98 16 21 N -0.57 -28.39 5.29 -306.99 -1.62 -30.01 16 22 C -0.33 -18.52 9.68 84.04 0.81 -17.70 16 23 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 24 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 25 N -0.92 -47.98 13.05 21.66 0.28 -47.70 16 26 Si 0.99 41.73 29.55 68.60 2.03 43.75 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 29 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.39 7.45 -2.39 -0.02 1.38 16 32 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.41 12.64 4.97 -92.71 -0.46 12.18 16 36 H 0.17 3.58 8.06 -2.91 -0.02 3.55 16 37 H 0.20 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.20 0.63 8.06 -2.91 -0.02 0.60 16 39 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.22 3.15 8.06 -2.91 -0.02 3.13 16 41 H 0.34 12.73 6.41 -89.69 -0.58 12.16 16 42 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 43 H 0.11 3.33 7.44 -2.39 -0.02 3.31 16 44 H 0.40 18.72 7.90 -92.70 -0.73 17.99 16 45 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -79.30 385.31 0.11 -79.19 By element: Atomic # 1 Polarization: 53.96 SS G_CDS: -0.71 Total: 53.25 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 6.82 Total: 25.76 kcal Atomic # 7 Polarization: -137.30 SS G_CDS: -7.90 Total: -145.20 kcal Atomic # 8 Polarization: -56.63 SS G_CDS: -0.13 Total: -56.76 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -79.30 0.11 -79.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752902572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.232 kcal (2) G-P(sol) polarization free energy of solvation -79.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds