Wall clock time and date at job start Wed Apr 1 2020 04:40:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08994 * 109.47470 * 2 1
4 4 C 1.52998 * 109.46865 * 119.99752 * 2 1 3
5 5 N 1.46903 * 109.47248 * 174.99990 * 4 2 1
6 6 C 1.46905 * 111.00160 * 179.97438 * 5 4 2
7 7 C 1.50704 * 109.46895 * 179.97438 * 6 5 4
8 8 O 1.21291 * 120.00255 * 359.97438 * 7 6 5
9 9 N 1.34775 * 119.99652 * 179.97438 * 7 6 5
10 10 C 1.37102 * 119.99679 * 179.97438 * 9 7 6
11 11 H 1.07996 * 119.99943 * 359.97438 * 10 9 7
12 12 C 1.38951 * 119.99961 * 180.02562 * 10 9 7
13 13 N 1.31413 * 119.99873 * 0.02562 * 12 10 9
14 14 Si 1.86799 * 120.00081 * 179.97438 * 12 10 9
15 15 H 1.48501 * 109.46856 * 359.97438 * 14 12 10
16 16 H 1.48502 * 109.46923 * 119.99660 * 14 12 10
17 17 H 1.48496 * 109.46872 * 239.99686 * 14 12 10
18 18 N 1.46494 * 109.46902 * 239.99436 * 2 1 3
19 19 C 1.34772 * 120.00068 * 85.00563 * 18 2 1
20 20 O 1.21590 * 119.99819 * 359.97438 * 19 18 2
21 21 C 1.47603 * 120.00199 * 179.97438 * 19 18 2
22 22 C 1.38562 * 119.74367 * 359.97128 * 21 19 18
23 23 N 1.33763 * 122.05869 * 179.97438 * 22 21 19
24 24 H 0.96998 * 119.63188 * 180.02562 * 23 22 21
25 25 C 1.37234 * 120.73861 * 0.02562 * 23 22 21
26 26 N 1.31992 * 134.46435 * 180.02562 * 25 23 22
27 27 C 1.33417 * 110.92846 * 179.97438 * 26 25 23
28 28 C 1.35783 * 110.88935 * 0.24627 * 27 26 25
29 29 C 1.41386 * 106.45568 * 359.61394 * 28 27 26
30 30 C 1.38758 * 135.65964 * 180.10207 * 29 28 27
31 31 H 1.09000 * 109.47553 * 300.00307 * 1 2 3
32 32 H 1.09004 * 109.47136 * 60.00156 * 1 2 3
33 33 H 1.09003 * 109.47334 * 180.02562 * 1 2 3
34 34 H 1.09001 * 109.47730 * 294.99622 * 4 2 1
35 35 H 1.08999 * 109.47512 * 54.99644 * 4 2 1
36 36 H 1.00896 * 111.00061 * 56.04315 * 5 4 2
37 37 H 1.09003 * 109.46811 * 299.99876 * 6 5 4
38 38 H 1.08995 * 109.46855 * 60.00155 * 6 5 4
39 39 H 0.96991 * 120.00312 * 0.02562 * 9 7 6
40 40 H 0.96999 * 120.00014 * 180.02562 * 13 12 10
41 41 H 0.97003 * 120.00324 * 265.00074 * 18 2 1
42 42 H 1.08008 * 118.96709 * 0.02562 * 22 21 19
43 43 H 1.08002 * 124.55123 * 179.97438 * 27 26 25
44 44 H 1.08003 * 126.77403 * 179.75850 * 28 27 26
45 45 H 1.08002 * 120.73144 * 0.31279 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0399 -0.7212 1.2493
5 7 3.5040 -0.8267 1.1905
6 6 4.0303 -1.5148 2.3769
7 6 5.5316 -1.6044 2.2809
8 8 6.1065 -1.1411 1.3186
9 7 6.2353 -2.1994 3.2643
10 6 7.6011 -2.2814 3.1767
11 1 8.1129 -1.8696 2.3195
12 6 8.3267 -2.8953 4.1903
13 7 7.7038 -3.3977 5.2327
14 14 10.1875 -3.0076 4.0706
15 1 10.6414 -2.3723 2.8075
16 1 10.8011 -2.3059 5.2267
17 1 10.5989 -4.4344 4.0824
18 7 2.0182 -0.6907 -1.1961
19 6 2.1470 -0.0185 -2.3570
20 8 1.8575 1.1612 -2.4118
21 6 2.6395 -0.7143 -3.5621
22 6 2.9685 -2.0585 -3.4935
23 7 3.4184 -2.7345 -4.5564
24 1 3.6379 -3.6752 -4.4688
25 6 3.5729 -2.1119 -5.7696
26 7 3.9822 -2.5005 -6.9628
27 6 3.9468 -1.4887 -7.8317
28 6 3.5051 -0.3524 -7.2339
29 6 3.2363 -0.6870 -5.8868
30 6 2.7715 -0.0082 -4.7694
31 1 -0.3634 0.5139 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3634 -1.0277 0.0005
34 1 1.7516 -0.1583 2.1370
35 1 1.6052 -1.7197 1.2953
36 1 3.9279 0.0825 1.0824
37 1 3.7557 -0.9569 3.2722
38 1 3.6095 -2.5188 2.4311
39 1 5.7756 -2.5702 4.0336
40 1 8.2103 -3.8259 5.9404
41 1 2.2489 -1.6319 -1.1525
42 1 2.8573 -2.5769 -2.5525
43 1 4.2353 -1.5625 -8.8699
44 1 3.3810 0.6155 -7.6968
45 1 2.5162 1.0396 -4.8268
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001754271656.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:40:38
Heat of formation + Delta-G solvation = 16.568191 kcal
Electronic energy + Delta-G solvation = -28778.741377 eV
Core-core repulsion = 24604.384183 eV
Total energy + Delta-G solvation = -4174.357194 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-41.74020 -40.00972 -38.45258 -38.18711 -36.79922 -34.43367 -34.07009 -33.76628
-31.62342 -31.26134 -29.45007 -29.02015 -27.70028 -25.16953 -24.41204 -24.17273
-23.26071 -21.91500 -21.05479 -20.48955 -19.33692 -18.21772 -17.95915 -17.82592
-16.90911 -16.66475 -16.46615 -15.96566 -15.62714 -15.27323 -14.98634 -14.76816
-14.64260 -14.39653 -14.10875 -14.02080 -13.61235 -13.37117 -13.31700 -12.77039
-12.68117 -12.62516 -12.48376 -12.11354 -12.01998 -11.90363 -11.64418 -11.56178
-11.12091 -11.07757 -10.96364 -10.40033 -10.29664 -10.21280 -9.67852 -9.59492
-9.26393 -8.59071 -8.40396 -8.22605 -8.04350 -7.99630 -6.49381 -3.90418
-0.03949 0.71344 2.01543 2.67678 2.89606 3.10950 3.22402 3.26193
3.29387 3.41665 3.81541 3.82314 3.95371 4.13708 4.20151 4.25786
4.58238 4.67956 4.85135 4.90711 4.94979 5.00864 5.14244 5.19514
5.35057 5.39208 5.46318 5.47803 5.60641 5.66476 5.67655 5.74052
5.81387 5.84380 5.95071 6.10958 6.15629 6.25821 6.32271 6.60142
6.90671 7.01701 7.33014 7.46865 7.48349 7.86094 7.98479 8.03700
8.52623 9.10385 9.45896 9.96746 10.68223
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.009715 B = 0.002385 C = 0.001999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2881.513088 B =11737.326709 C =14006.800731
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.147 3.853
3 H 0.090 0.910
4 C 0.046 3.954
5 N -0.668 5.668
6 C 0.050 3.950
7 C 0.438 3.562
8 O -0.583 6.583
9 N -0.563 5.563
10 C -0.300 4.300
11 H 0.103 0.897
12 C 0.023 3.977
13 N -0.901 5.901
14 Si 0.929 3.071
15 H -0.268 1.268
16 H -0.281 1.281
17 H -0.281 1.281
18 N -0.706 5.706
19 C 0.579 3.421
20 O -0.540 6.540
21 C -0.231 4.231
22 C 0.188 3.812
23 N -0.485 5.485
24 H 0.429 0.571
25 C 0.243 3.757
26 N -0.529 5.529
27 C 0.051 3.949
28 C -0.221 4.221
29 C -0.172 4.172
30 C 0.085 3.915
31 H 0.066 0.934
32 H 0.064 0.936
33 H 0.058 0.942
34 H 0.045 0.955
35 H 0.078 0.922
36 H 0.352 0.648
37 H 0.045 0.955
38 H 0.086 0.914
39 H 0.392 0.608
40 H 0.271 0.729
41 H 0.400 0.600
42 H 0.182 0.818
43 H 0.160 0.840
44 H 0.139 0.861
45 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.827 1.552 -12.572 21.062
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.042 3.958
3 H 0.108 0.892
4 C -0.084 4.084
5 N -0.301 5.301
6 C -0.083 4.083
7 C 0.224 3.776
8 O -0.467 6.467
9 N -0.199 5.199
10 C -0.429 4.429
11 H 0.121 0.879
12 C -0.179 4.179
13 N -0.542 5.542
14 Si 0.756 3.244
15 H -0.192 1.192
16 H -0.207 1.207
17 H -0.207 1.207
18 N -0.357 5.357
19 C 0.366 3.634
20 O -0.418 6.418
21 C -0.241 4.241
22 C 0.043 3.957
23 N -0.078 5.078
24 H 0.267 0.733
25 C -0.006 4.006
26 N -0.249 5.249
27 C -0.092 4.092
28 C -0.243 4.243
29 C -0.180 4.180
30 C 0.061 3.939
31 H 0.085 0.915
32 H 0.083 0.917
33 H 0.077 0.923
34 H 0.064 0.936
35 H 0.096 0.904
36 H 0.172 0.828
37 H 0.063 0.937
38 H 0.104 0.896
39 H 0.225 0.775
40 H 0.081 0.919
41 H 0.236 0.764
42 H 0.199 0.801
43 H 0.177 0.823
44 H 0.157 0.843
45 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -16.205 1.087 -13.868 21.357
hybrid contribution 0.600 0.185 1.595 1.714
sum -15.605 1.271 -12.274 19.894
Atomic orbital electron populations
1.22148 0.94767 1.02309 1.02839 1.20979 0.93689 0.97628 0.83527
0.89211 1.22335 0.89581 1.00742 0.95745 1.60101 1.03009 1.27058
1.39940 1.21683 0.95343 0.99818 0.91415 1.19797 0.87993 0.84723
0.85108 1.90538 1.71097 1.51901 1.33182 1.41878 1.07453 1.50881
1.19737 1.19745 0.81475 1.35194 1.06498 0.87877 1.25269 1.00745
0.96695 0.95206 1.69615 1.36672 1.38581 1.09357 0.85808 0.82160
0.77958 0.78492 1.19185 1.20703 1.20708 1.45710 1.66928 1.14073
1.08962 1.17553 0.77274 0.86288 0.82328 1.90794 1.50975 1.15174
1.84848 1.19333 1.15372 0.92941 0.96432 1.22328 0.89877 0.93308
0.90205 1.40266 1.47351 1.14118 1.06037 0.73293 1.20459 1.02511
0.90389 0.87221 1.69526 1.24189 1.33174 0.97964 1.22345 0.99868
0.88668 0.98313 1.21419 1.10296 1.00359 0.92229 1.20118 1.08806
0.93252 0.95791 1.21411 0.83967 0.99895 0.88636 0.91455 0.91729
0.92280 0.93645 0.90404 0.82826 0.93746 0.89612 0.77478 0.91868
0.76407 0.80070 0.82294 0.84284 0.83229
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.18 9.48 37.16 0.35 -0.83 16
2 C 0.15 1.31 2.81 -67.94 -0.19 1.12 16
3 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16
4 C 0.05 0.42 5.24 -3.82 -0.02 0.40 16
5 N -0.67 -8.81 5.85 -115.05 -0.67 -9.49 16
6 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16
7 C 0.44 9.60 7.82 -10.98 -0.09 9.51 16
8 O -0.58 -14.94 15.78 5.55 0.09 -14.85 16
9 N -0.56 -13.54 5.29 -10.96 -0.06 -13.60 16
10 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16
11 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16
12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16
13 N -0.90 -23.79 13.05 55.50 0.72 -23.07 16
14 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16
15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16
18 N -0.71 -6.21 4.75 -54.83 -0.26 -6.47 16
19 C 0.58 6.35 7.72 -12.44 -0.10 6.25 16
20 O -0.54 -7.74 16.00 5.29 0.08 -7.66 16
21 C -0.23 -2.23 5.86 -105.11 -0.62 -2.84 16
22 C 0.19 1.29 10.64 -16.59 -0.18 1.12 16
23 N -0.49 -3.80 5.27 -10.38 -0.05 -3.85 16
24 H 0.43 2.09 8.91 -40.82 -0.36 1.72 16
25 C 0.24 2.92 8.64 -153.91 -1.33 1.60 16
26 N -0.53 -7.27 11.17 -11.08 -0.12 -7.39 16
27 C 0.05 0.63 11.69 -17.74 -0.21 0.42 16
28 C -0.22 -2.59 10.99 -39.26 -0.43 -3.03 16
29 C -0.17 -2.08 6.41 -105.01 -0.67 -2.76 16
30 C 0.08 0.92 9.71 -38.54 -0.37 0.55 16
31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16
35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
36 H 0.35 5.26 8.43 -39.29 -0.33 4.93 16
37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16
39 H 0.39 8.99 7.90 -40.82 -0.32 8.67 16
40 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16
41 H 0.40 2.71 6.55 -40.82 -0.27 2.44 16
42 H 0.18 0.56 6.25 -52.48 -0.33 0.23 16
43 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16
44 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16
45 H 0.15 1.54 7.67 -52.49 -0.40 1.14 16
LS Contribution 388.25 15.07 5.85 5.85
Total: -1.00 -36.33 388.25 -9.29 -45.62
By element:
Atomic # 1 Polarization: 20.58 SS G_CDS: -5.72 Total: 14.85 kcal
Atomic # 6 Polarization: 8.63 SS G_CDS: -4.12 Total: 4.51 kcal
Atomic # 7 Polarization: -63.42 SS G_CDS: -0.45 Total: -63.86 kcal
Atomic # 8 Polarization: -22.68 SS G_CDS: 0.17 Total: -22.51 kcal
Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -36.33 -9.29 -45.62 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754271656.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.184 kcal
(2) G-P(sol) polarization free energy of solvation -36.325 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.615 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.568 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds