Wall clock time and date at job start Wed Apr 1 2020 04:40:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08994 * 109.47470 * 2 1
4 4 C 1.52998 * 109.46865 * 119.99752 * 2 1 3
5 5 N 1.46903 * 109.47248 * 174.99990 * 4 2 1
6 6 C 1.46905 * 111.00160 * 179.97438 * 5 4 2
7 7 C 1.50704 * 109.46895 * 179.97438 * 6 5 4
8 8 O 1.21291 * 120.00255 * 359.97438 * 7 6 5
9 9 N 1.34775 * 119.99652 * 179.97438 * 7 6 5
10 10 C 1.37102 * 119.99679 * 179.97438 * 9 7 6
11 11 H 1.07996 * 119.99943 * 359.97438 * 10 9 7
12 12 C 1.38951 * 119.99961 * 180.02562 * 10 9 7
13 13 N 1.31413 * 119.99873 * 0.02562 * 12 10 9
14 14 Si 1.86799 * 120.00081 * 179.97438 * 12 10 9
15 15 H 1.48501 * 109.46856 * 359.97438 * 14 12 10
16 16 H 1.48502 * 109.46923 * 119.99660 * 14 12 10
17 17 H 1.48496 * 109.46872 * 239.99686 * 14 12 10
18 18 N 1.46494 * 109.46902 * 239.99436 * 2 1 3
19 19 C 1.34772 * 120.00068 * 85.00563 * 18 2 1
20 20 O 1.21590 * 119.99819 * 359.97438 * 19 18 2
21 21 C 1.47603 * 120.00199 * 179.97438 * 19 18 2
22 22 C 1.38562 * 119.74367 * 359.97128 * 21 19 18
23 23 N 1.33763 * 122.05869 * 179.97438 * 22 21 19
24 24 H 0.96998 * 119.63188 * 180.02562 * 23 22 21
25 25 C 1.37234 * 120.73861 * 0.02562 * 23 22 21
26 26 N 1.31992 * 134.46435 * 180.02562 * 25 23 22
27 27 C 1.33417 * 110.92846 * 179.97438 * 26 25 23
28 28 C 1.35783 * 110.88935 * 0.24627 * 27 26 25
29 29 C 1.41386 * 106.45568 * 359.61394 * 28 27 26
30 30 C 1.38758 * 135.65964 * 180.10207 * 29 28 27
31 31 H 1.09000 * 109.47553 * 300.00307 * 1 2 3
32 32 H 1.09004 * 109.47136 * 60.00156 * 1 2 3
33 33 H 1.09003 * 109.47334 * 180.02562 * 1 2 3
34 34 H 1.09001 * 109.47730 * 294.99622 * 4 2 1
35 35 H 1.08999 * 109.47512 * 54.99644 * 4 2 1
36 36 H 1.00896 * 111.00061 * 56.04315 * 5 4 2
37 37 H 1.09003 * 109.46811 * 299.99876 * 6 5 4
38 38 H 1.08995 * 109.46855 * 60.00155 * 6 5 4
39 39 H 0.96991 * 120.00312 * 0.02562 * 9 7 6
40 40 H 0.96999 * 120.00014 * 180.02562 * 13 12 10
41 41 H 0.97003 * 120.00324 * 265.00074 * 18 2 1
42 42 H 1.08008 * 118.96709 * 0.02562 * 22 21 19
43 43 H 1.08002 * 124.55123 * 179.97438 * 27 26 25
44 44 H 1.08003 * 126.77403 * 179.75850 * 28 27 26
45 45 H 1.08002 * 120.73144 * 0.31279 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0399 -0.7212 1.2493
5 7 3.5040 -0.8267 1.1905
6 6 4.0303 -1.5148 2.3769
7 6 5.5316 -1.6044 2.2809
8 8 6.1065 -1.1411 1.3186
9 7 6.2353 -2.1994 3.2643
10 6 7.6011 -2.2814 3.1767
11 1 8.1129 -1.8696 2.3195
12 6 8.3267 -2.8953 4.1903
13 7 7.7038 -3.3977 5.2327
14 14 10.1875 -3.0076 4.0706
15 1 10.6414 -2.3723 2.8075
16 1 10.8011 -2.3059 5.2267
17 1 10.5989 -4.4344 4.0824
18 7 2.0182 -0.6907 -1.1961
19 6 2.1470 -0.0185 -2.3570
20 8 1.8575 1.1612 -2.4118
21 6 2.6395 -0.7143 -3.5621
22 6 2.9685 -2.0585 -3.4935
23 7 3.4184 -2.7345 -4.5564
24 1 3.6379 -3.6752 -4.4688
25 6 3.5729 -2.1119 -5.7696
26 7 3.9822 -2.5005 -6.9628
27 6 3.9468 -1.4887 -7.8317
28 6 3.5051 -0.3524 -7.2339
29 6 3.2363 -0.6870 -5.8868
30 6 2.7715 -0.0082 -4.7694
31 1 -0.3634 0.5139 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3634 -1.0277 0.0005
34 1 1.7516 -0.1583 2.1370
35 1 1.6052 -1.7197 1.2953
36 1 3.9279 0.0825 1.0824
37 1 3.7557 -0.9569 3.2722
38 1 3.6095 -2.5188 2.4311
39 1 5.7756 -2.5702 4.0336
40 1 8.2103 -3.8259 5.9404
41 1 2.2489 -1.6319 -1.1525
42 1 2.8573 -2.5769 -2.5525
43 1 4.2353 -1.5625 -8.8699
44 1 3.3810 0.6155 -7.6968
45 1 2.5162 1.0396 -4.8268
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754271656.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:40:35
Heat of formation + Delta-G solvation = -11.909886 kcal
Electronic energy + Delta-G solvation = -28779.976279 eV
Core-core repulsion = 24604.384183 eV
Total energy + Delta-G solvation = -4175.592096 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 2.85 seconds
Orbital eigenvalues (eV)
-42.53540 -40.86230 -40.08930 -39.01929 -37.76823 -36.01538 -35.11726 -34.88181
-33.23976 -32.39857 -30.24764 -29.85388 -28.90216 -26.68054 -25.20503 -25.09798
-24.36506 -22.69124 -21.85150 -21.32333 -20.99634 -19.88574 -19.03337 -18.59707
-17.95178 -17.45583 -17.42840 -17.23152 -16.55690 -16.44302 -16.28143 -16.01271
-15.72269 -15.61675 -15.15529 -15.09097 -14.90879 -14.51537 -14.15102 -13.97414
-13.57897 -13.48636 -13.44579 -13.26180 -13.05720 -12.92454 -12.81828 -12.75397
-12.65800 -12.39162 -12.12625 -11.84299 -11.75007 -11.49744 -11.12744 -10.59349
-10.31971 -10.05038 -9.99078 -9.31206 -9.22167 -8.86902 -8.46208 -5.93894
-0.81145 -0.05437 1.32496 1.36283 1.42416 1.55349 1.81448 2.09348
2.13421 2.29277 2.37087 2.59174 2.94013 3.16749 3.22203 3.39900
3.54184 3.57438 3.83248 3.91072 4.08325 4.15916 4.24400 4.38540
4.44962 4.58443 4.61575 4.66221 4.73300 4.79113 4.84345 4.86810
4.90337 4.96991 5.13396 5.27569 5.36574 5.42513 5.55181 5.61651
5.78579 5.90342 6.08892 6.12218 6.35780 6.59802 6.62332 6.99801
7.15186 7.25534 7.60135 8.15621 8.71211
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.009715 B = 0.002385 C = 0.001999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2881.513088 B =11737.326709 C =14006.800731
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.148 3.852
3 H 0.065 0.935
4 C 0.052 3.948
5 N -0.676 5.676
6 C 0.066 3.934
7 C 0.437 3.563
8 O -0.624 6.624
9 N -0.575 5.575
10 C -0.329 4.329
11 H 0.076 0.924
12 C -0.012 4.012
13 N -0.919 5.919
14 Si 0.987 3.013
15 H -0.275 1.275
16 H -0.273 1.273
17 H -0.271 1.271
18 N -0.694 5.694
19 C 0.579 3.421
20 O -0.581 6.581
21 C -0.249 4.249
22 C 0.222 3.778
23 N -0.471 5.471
24 H 0.445 0.555
25 C 0.224 3.776
26 N -0.557 5.557
27 C 0.027 3.973
28 C -0.229 4.229
29 C -0.202 4.202
30 C 0.088 3.912
31 H 0.079 0.921
32 H 0.046 0.954
33 H 0.078 0.922
34 H 0.059 0.941
35 H 0.104 0.896
36 H 0.339 0.661
37 H 0.065 0.935
38 H 0.114 0.886
39 H 0.397 0.603
40 H 0.277 0.723
41 H 0.413 0.587
42 H 0.229 0.771
43 H 0.177 0.823
44 H 0.153 0.847
45 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.022 0.081 -10.931 21.078
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.043 3.957
3 H 0.083 0.917
4 C -0.077 4.077
5 N -0.308 5.308
6 C -0.066 4.066
7 C 0.225 3.775
8 O -0.510 6.510
9 N -0.213 5.213
10 C -0.459 4.459
11 H 0.094 0.906
12 C -0.212 4.212
13 N -0.561 5.561
14 Si 0.812 3.188
15 H -0.200 1.200
16 H -0.198 1.198
17 H -0.196 1.196
18 N -0.345 5.345
19 C 0.367 3.633
20 O -0.462 6.462
21 C -0.258 4.258
22 C 0.075 3.925
23 N -0.064 5.064
24 H 0.287 0.713
25 C -0.025 4.025
26 N -0.277 5.277
27 C -0.116 4.116
28 C -0.251 4.251
29 C -0.210 4.210
30 C 0.063 3.937
31 H 0.097 0.903
32 H 0.065 0.935
33 H 0.097 0.903
34 H 0.077 0.923
35 H 0.122 0.878
36 H 0.157 0.843
37 H 0.082 0.918
38 H 0.132 0.868
39 H 0.231 0.769
40 H 0.086 0.914
41 H 0.251 0.749
42 H 0.245 0.755
43 H 0.194 0.806
44 H 0.171 0.829
45 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -17.426 -0.445 -12.210 21.283
hybrid contribution 0.892 0.680 1.156 1.611
sum -16.534 0.235 -11.054 19.890
Atomic orbital electron populations
1.22071 0.93093 1.03481 1.02598 1.20977 0.94848 0.96429 0.83474
0.91675 1.22414 0.86776 1.02435 0.96042 1.60118 1.05356 1.26276
1.39052 1.21550 0.89990 1.02029 0.93070 1.21013 0.90828 0.82211
0.83428 1.90513 1.72923 1.52963 1.34604 1.41950 1.06730 1.51935
1.20672 1.19638 0.83256 1.36634 1.06385 0.90556 1.25952 1.04501
0.96031 0.94692 1.69662 1.38020 1.38725 1.09653 0.84948 0.77464
0.78268 0.78159 1.19989 1.19815 1.19639 1.45638 1.66047 1.14533
1.08305 1.17681 0.76794 0.85833 0.83010 1.90777 1.52920 1.16989
1.85489 1.19291 1.16751 0.94187 0.95568 1.22935 0.86187 0.92374
0.91038 1.40355 1.46257 1.14910 1.04924 0.71336 1.20644 1.03018
0.90795 0.88010 1.69466 1.25287 1.34048 0.98925 1.22686 1.00939
0.88771 0.99224 1.21695 1.09965 1.00942 0.92476 1.20277 1.10542
0.93867 0.96316 1.21492 0.83232 0.99950 0.88989 0.90262 0.93478
0.90330 0.92259 0.87810 0.84269 0.91751 0.86801 0.76929 0.91382
0.74946 0.75530 0.80619 0.82899 0.83541
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.81 9.48 71.98 0.68 -1.13 16
2 C 0.15 2.28 2.81 44.99 0.13 2.41 16
3 H 0.07 1.37 7.58 -2.39 -0.02 1.35 16
4 C 0.05 0.74 5.24 86.30 0.45 1.19 16
5 N -0.68 -15.88 5.85 -517.91 -3.03 -18.91 16
6 C 0.07 1.80 6.17 85.56 0.53 2.33 16
7 C 0.44 18.71 7.82 87.66 0.69 19.40 16
8 O -0.62 -31.98 15.78 -3.06 -0.05 -32.03 16
9 N -0.58 -27.45 5.29 -306.98 -1.62 -29.07 16
10 C -0.33 -17.92 9.68 84.04 0.81 -17.11 16
11 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16
12 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16
13 N -0.92 -47.76 13.05 21.66 0.28 -47.47 16
14 Si 0.99 41.81 29.55 68.60 2.03 43.84 16
15 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16
16 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16
17 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16
18 N -0.69 -10.47 4.75 -445.66 -2.12 -12.59 16
19 C 0.58 12.10 7.72 86.72 0.67 12.77 16
20 O -0.58 -16.82 16.00 -4.00 -0.06 -16.89 16
21 C -0.25 -4.51 5.86 -20.18 -0.12 -4.63 16
22 C 0.22 2.45 10.64 84.48 0.90 3.35 16
23 N -0.47 -6.49 5.27 -186.74 -0.98 -7.48 16
24 H 0.44 3.25 8.91 -92.71 -0.83 2.43 16
25 C 0.22 5.33 8.64 135.83 1.17 6.51 16
26 N -0.56 -15.56 11.17 -188.98 -2.11 -17.67 16
27 C 0.03 0.67 11.69 83.88 0.98 1.65 16
28 C -0.23 -5.59 10.99 22.48 0.25 -5.34 16
29 C -0.20 -5.01 6.41 -20.12 -0.13 -5.14 16
30 C 0.09 1.94 9.71 22.94 0.22 2.16 16
31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16
32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16
33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16
34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16
36 H 0.34 9.63 8.43 -89.70 -0.76 8.87 16
37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16
38 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16
39 H 0.40 17.85 7.90 -92.71 -0.73 17.12 16
40 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16
41 H 0.41 3.94 6.55 -92.71 -0.61 3.33 16
42 H 0.23 0.32 6.25 -2.91 -0.02 0.30 16
43 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16
44 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16
45 H 0.15 3.21 7.67 -2.91 -0.02 3.18 16
Total: -1.00 -81.98 388.25 -1.80 -83.77
By element:
Atomic # 1 Polarization: 38.06 SS G_CDS: -1.83 Total: 36.23 kcal
Atomic # 6 Polarization: 10.57 SS G_CDS: 7.70 Total: 18.27 kcal
Atomic # 7 Polarization: -123.61 SS G_CDS: -9.58 Total: -133.19 kcal
Atomic # 8 Polarization: -48.80 SS G_CDS: -0.11 Total: -48.91 kcal
Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal
Total: -81.98 -1.80 -83.77 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754271656.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.862 kcal
(2) G-P(sol) polarization free energy of solvation -81.976 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.113 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.797 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.772 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.910 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.85 seconds