Wall clock time and date at job start Wed Apr 1 2020 04:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47140 * 90.00198 * 14 12 10 16 16 H 1.48503 * 109.46972 * 210.00225 * 14 12 10 17 17 H 1.48504 * 109.47241 * 330.00124 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21527 * 120.00519 * 0.02562 * 19 18 2 21 21 C 1.48060 * 119.99575 * 180.02562 * 19 18 2 22 22 C 1.39769 * 119.46741 * 179.72695 * 21 19 18 23 23 C 1.38137 * 119.56954 * 179.76499 * 22 21 19 24 24 C 1.39249 * 118.38334 * 0.50054 * 23 22 21 25 25 N 1.37350 * 133.61786 * 179.77186 * 24 23 22 26 26 H 0.96998 * 125.04985 * 359.97438 * 25 24 23 27 27 C 1.36713 * 109.89745 * 179.97438 * 25 24 23 28 28 C 1.34290 * 110.02739 * 0.02562 * 27 25 24 29 29 C 1.41193 * 119.09627 * 359.74522 * 24 23 22 30 30 N 1.32448 * 119.47451 * 359.97438 * 21 19 18 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 34 34 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 35 35 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 36 36 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 37 37 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 38 38 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 39 39 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 40 40 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 41 41 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 42 42 H 1.07997 * 120.21675 * 0.02562 * 22 21 19 43 43 H 1.08004 * 120.80946 * 180.24371 * 23 22 21 44 44 H 1.08007 * 124.98881 * 180.02562 * 27 25 24 45 45 H 1.07998 * 126.49082 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.7945 -1.8027 4.7050 16 1 10.6580 -4.2228 4.7768 17 1 10.5908 -3.0673 2.6458 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8585 1.1610 -2.4116 21 6 2.6402 -0.7164 -3.5661 22 6 2.7640 -0.0098 -4.7656 23 6 3.2285 -0.6578 -5.8937 24 6 3.5499 -2.0092 -5.7956 25 7 4.0209 -2.9384 -6.6907 26 1 4.2178 -2.7629 -7.6241 27 6 4.1709 -4.1475 -6.0705 28 6 3.8108 -4.0505 -4.7804 29 6 3.3960 -2.6632 -4.5538 30 7 2.9522 -2.0016 -3.4948 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.7516 -0.1583 2.1369 35 1 1.6053 -1.7198 1.2952 36 1 3.7996 -1.2884 0.3435 37 1 3.7556 -0.9587 3.2721 38 1 3.6093 -2.5199 2.4296 39 1 5.7754 -2.5722 4.0326 40 1 8.2103 -3.8257 5.9405 41 1 2.2491 -1.6318 -1.1525 42 1 2.5023 1.0371 -4.8093 43 1 3.3356 -0.1303 -6.8300 44 1 4.5267 -5.0486 -6.5479 45 1 3.8251 -4.8441 -4.0481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754276636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:48 Heat of formation + Delta-G solvation = 1.697617 kcal Electronic energy + Delta-G solvation = -28904.213115 eV Core-core repulsion = 24729.211085 eV Total energy + Delta-G solvation = -4175.002031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 5.00 seconds Orbital eigenvalues (eV) -41.85719 -39.93810 -38.30360 -37.77514 -36.54167 -34.21687 -33.61069 -33.10829 -31.41721 -31.13382 -30.02444 -29.65689 -27.52391 -25.14190 -24.77133 -23.33635 -23.02106 -21.61606 -20.97352 -20.43757 -19.21733 -18.60710 -18.05348 -17.76013 -17.06044 -16.22956 -16.05989 -15.49003 -15.29993 -15.00954 -14.85085 -14.64110 -14.40455 -14.29188 -13.80973 -13.77369 -13.47332 -13.41879 -13.15125 -12.99465 -12.94021 -12.68039 -12.54376 -12.27408 -11.86060 -11.64355 -11.55080 -11.41004 -11.02789 -10.89769 -10.66975 -10.36168 -10.28095 -10.17567 -9.59395 -9.46413 -9.09104 -8.70101 -8.46052 -8.39718 -8.00489 -7.90841 -6.37507 -3.77910 0.58287 0.78563 2.28562 2.60671 2.77492 3.10686 3.21025 3.29095 3.35326 3.78156 3.84065 3.96578 4.12151 4.31011 4.34469 4.57408 4.62893 4.72924 4.91507 4.99560 5.09990 5.25812 5.26841 5.28440 5.34502 5.38713 5.52443 5.60776 5.64871 5.71541 5.76121 5.84907 6.00383 6.03669 6.04543 6.12722 6.16224 6.32278 6.51719 6.56939 6.98436 7.24327 7.42243 7.59522 7.69444 7.72860 8.11250 8.23214 8.66573 9.22730 9.59435 10.11531 10.80442 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008935 B = 0.002593 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.057413 B =10796.232688 C =13111.161876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.099 0.901 4 C 0.051 3.949 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.441 3.559 8 O -0.581 6.581 9 N -0.565 5.565 10 C -0.297 4.297 11 H 0.102 0.898 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 N -0.703 5.703 19 C 0.582 3.418 20 O -0.537 6.537 21 C 0.073 3.927 22 C -0.096 4.096 23 C -0.094 4.094 24 C 0.065 3.935 25 N -0.590 5.590 26 H 0.419 0.581 27 C 0.065 3.935 28 C -0.180 4.180 29 C 0.090 3.910 30 N -0.415 5.415 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.033 0.967 36 H 0.350 0.650 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.408 0.592 42 H 0.153 0.847 43 H 0.139 0.861 44 H 0.181 0.819 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.714 -1.362 -21.326 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.117 0.883 4 C -0.079 4.079 5 N -0.301 5.301 6 C -0.083 4.083 7 C 0.227 3.773 8 O -0.464 6.464 9 N -0.202 5.202 10 C -0.427 4.427 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.545 5.545 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.194 1.194 18 N -0.354 5.354 19 C 0.367 3.633 20 O -0.413 6.413 21 C -0.075 4.075 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.046 4.046 25 N -0.193 5.193 26 H 0.257 0.743 27 C -0.062 4.062 28 C -0.205 4.205 29 C -0.046 4.046 30 N -0.126 5.126 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.051 0.949 36 H 0.170 0.830 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.244 0.756 42 H 0.170 0.830 43 H 0.157 0.843 44 H 0.198 0.802 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.393 -0.163 -20.863 25.347 hybrid contribution 0.812 -1.308 -0.828 1.748 sum -13.581 -1.471 -21.691 25.634 Atomic orbital electron populations 1.22150 0.94944 1.02151 1.02731 1.21103 0.93496 0.98548 0.83073 0.88258 1.22299 0.88930 0.99027 0.97683 1.60038 1.07461 1.57537 1.05100 1.21687 0.95098 0.96979 0.94490 1.19821 0.88118 0.84147 0.85248 1.90538 1.71126 1.51315 1.33458 1.41851 1.07369 1.51026 1.19940 1.19703 0.81562 1.34922 1.06521 0.87976 1.25248 1.00619 0.96871 0.95243 1.69615 1.36623 1.38825 1.09408 0.85865 0.82317 0.77600 0.78551 1.20415 1.20967 1.19447 1.45839 1.65856 1.14598 1.09101 1.17700 0.77312 0.85829 0.82500 1.90766 1.50842 1.14931 1.84766 1.20921 1.02314 0.89822 0.94396 1.21731 0.97387 1.01631 0.91103 1.20426 1.01400 0.90603 0.99843 1.19275 1.01271 0.92226 0.91786 1.41613 1.57790 1.08153 1.11782 0.74324 1.21980 1.02012 0.88940 0.93272 1.21667 1.08510 0.94275 0.96080 1.20019 1.01975 0.94889 0.87704 1.66863 1.07832 1.07596 1.30330 0.92488 0.91313 0.91882 0.89414 0.94912 0.82974 0.89489 0.93832 0.77477 0.91934 0.75607 0.82959 0.84345 0.80203 0.82352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.48 37.16 0.35 -1.27 16 2 C 0.14 1.78 2.88 -67.93 -0.20 1.58 16 3 H 0.10 1.45 7.58 -51.93 -0.39 1.06 16 4 C 0.05 0.64 5.30 -3.82 -0.02 0.62 16 5 N -0.67 -11.39 6.12 -115.06 -0.70 -12.09 16 6 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 7 C 0.44 10.77 7.82 -10.99 -0.09 10.69 16 8 O -0.58 -16.42 15.78 5.55 0.09 -16.33 16 9 N -0.56 -14.65 5.29 -10.97 -0.06 -14.71 16 10 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 11 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 14 Si 0.93 21.42 29.55 -169.99 -5.02 16.40 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 N -0.70 -9.39 4.34 -54.68 -0.24 -9.63 16 19 C 0.58 8.65 7.77 -12.23 -0.10 8.56 16 20 O -0.54 -9.05 15.96 5.34 0.09 -8.96 16 21 C 0.07 1.01 6.74 -83.00 -0.56 0.45 16 22 C -0.10 -1.10 9.60 -39.05 -0.37 -1.47 16 23 C -0.09 -0.86 10.18 -39.24 -0.40 -1.26 16 24 C 0.07 0.65 7.29 -83.90 -0.61 0.04 16 25 N -0.59 -3.77 6.05 -10.58 -0.06 -3.83 16 26 H 0.42 1.22 8.96 -40.82 -0.37 0.86 16 27 C 0.07 0.41 11.81 -16.77 -0.20 0.21 16 28 C -0.18 -1.71 11.08 -37.62 -0.42 -2.13 16 29 C 0.09 1.11 7.52 -83.10 -0.62 0.49 16 30 N -0.42 -5.77 9.57 -6.43 -0.06 -5.83 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.35 6.35 7.28 -39.29 -0.29 6.06 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.41 5.24 7.46 -40.82 -0.30 4.94 16 42 H 0.15 1.57 7.61 -52.49 -0.40 1.17 16 43 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 44 H 0.18 0.40 8.06 -52.48 -0.42 -0.02 16 45 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -36.65 389.27 -8.70 -45.35 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -5.81 Total: 18.75 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -3.50 Total: 9.24 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -0.40 Total: -70.30 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: 0.17 Total: -25.30 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.65 -8.70 -45.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754276636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.044 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.00 seconds