Wall clock time and date at job start Wed Apr 1 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47140 * 90.00198 * 14 12 10 16 16 H 1.48503 * 109.46972 * 210.00225 * 14 12 10 17 17 H 1.48504 * 109.47241 * 330.00124 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21527 * 120.00519 * 0.02562 * 19 18 2 21 21 C 1.48060 * 119.99575 * 180.02562 * 19 18 2 22 22 C 1.39769 * 119.46741 * 179.72695 * 21 19 18 23 23 C 1.38137 * 119.56954 * 179.76499 * 22 21 19 24 24 C 1.39249 * 118.38334 * 0.50054 * 23 22 21 25 25 N 1.37350 * 133.61786 * 179.77186 * 24 23 22 26 26 H 0.96998 * 125.04985 * 359.97438 * 25 24 23 27 27 C 1.36713 * 109.89745 * 179.97438 * 25 24 23 28 28 C 1.34290 * 110.02739 * 0.02562 * 27 25 24 29 29 C 1.41193 * 119.09627 * 359.74522 * 24 23 22 30 30 N 1.32448 * 119.47451 * 359.97438 * 21 19 18 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 33 33 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 34 34 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 35 35 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 36 36 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 37 37 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 38 38 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 39 39 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 40 40 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 41 41 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 42 42 H 1.07997 * 120.21675 * 0.02562 * 22 21 19 43 43 H 1.08004 * 120.80946 * 180.24371 * 23 22 21 44 44 H 1.08007 * 124.98881 * 180.02562 * 27 25 24 45 45 H 1.07998 * 126.49082 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.7945 -1.8027 4.7050 16 1 10.6580 -4.2228 4.7768 17 1 10.5908 -3.0673 2.6458 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8585 1.1610 -2.4116 21 6 2.6402 -0.7164 -3.5661 22 6 2.7640 -0.0098 -4.7656 23 6 3.2285 -0.6578 -5.8937 24 6 3.5499 -2.0092 -5.7956 25 7 4.0209 -2.9384 -6.6907 26 1 4.2178 -2.7629 -7.6241 27 6 4.1709 -4.1475 -6.0705 28 6 3.8108 -4.0505 -4.7804 29 6 3.3960 -2.6632 -4.5538 30 7 2.9522 -2.0016 -3.4948 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.7516 -0.1583 2.1369 35 1 1.6053 -1.7198 1.2952 36 1 3.7996 -1.2884 0.3435 37 1 3.7556 -0.9587 3.2721 38 1 3.6093 -2.5199 2.4296 39 1 5.7754 -2.5722 4.0326 40 1 8.2103 -3.8257 5.9405 41 1 2.2491 -1.6318 -1.1525 42 1 2.5023 1.0371 -4.8093 43 1 3.3356 -0.1303 -6.8300 44 1 4.5267 -5.0486 -6.5479 45 1 3.8251 -4.8441 -4.0481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754276636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:40 Heat of formation + Delta-G solvation = -28.337713 kcal Electronic energy + Delta-G solvation = -28905.515545 eV Core-core repulsion = 24729.211085 eV Total energy + Delta-G solvation = -4176.304460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 5.26 seconds Orbital eigenvalues (eV) -42.58502 -40.98701 -40.14200 -38.68747 -37.75579 -36.04070 -35.12763 -33.92493 -33.26382 -32.36918 -30.81038 -30.41950 -28.97664 -26.72940 -25.80875 -24.64153 -23.93587 -22.51807 -21.70428 -21.48018 -21.08399 -19.92736 -19.35617 -18.93407 -17.89041 -17.75371 -17.19160 -16.90724 -16.41154 -16.36160 -16.02893 -15.84596 -15.70341 -15.57543 -15.28872 -15.08140 -14.55729 -14.33364 -14.09019 -14.01586 -13.88823 -13.67557 -13.61496 -13.48976 -13.21268 -13.08719 -13.02254 -12.79893 -12.66826 -12.42325 -12.12283 -11.94812 -11.51649 -11.43393 -11.35960 -10.50468 -10.37986 -10.14940 -10.01840 -9.49547 -9.33637 -9.12619 -8.46989 -5.95708 -0.27819 0.00529 1.37527 1.40953 1.53968 1.63784 1.76228 2.00231 2.05058 2.13175 2.29075 2.87769 2.90696 3.01463 3.20178 3.49248 3.61471 3.74049 3.87610 3.98737 4.00304 4.20396 4.27218 4.36720 4.44187 4.50433 4.53613 4.58501 4.66116 4.68445 4.74259 4.80186 4.93530 4.96215 5.08577 5.27923 5.34797 5.39966 5.40422 5.50699 5.83398 5.86865 6.09061 6.31806 6.38263 6.55343 6.60351 6.80203 7.12515 7.14987 7.55854 8.12131 8.70512 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008935 B = 0.002593 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.057413 B =10796.232688 C =13111.161876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 H 0.073 0.927 4 C 0.056 3.944 5 N -0.688 5.688 6 C 0.065 3.935 7 C 0.435 3.565 8 O -0.626 6.626 9 N -0.571 5.571 10 C -0.335 4.335 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.992 3.008 15 H -0.271 1.271 16 H -0.268 1.268 17 H -0.274 1.274 18 N -0.699 5.699 19 C 0.575 3.425 20 O -0.568 6.568 21 C 0.045 3.955 22 C -0.114 4.114 23 C -0.080 4.080 24 C 0.059 3.941 25 N -0.571 5.571 26 H 0.440 0.560 27 C 0.102 3.898 28 C -0.224 4.224 29 C 0.055 3.945 30 N -0.442 5.442 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.340 0.660 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.410 0.590 42 H 0.156 0.844 43 H 0.178 0.822 44 H 0.230 0.770 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 -2.844 -22.492 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.091 0.909 4 C -0.073 4.073 5 N -0.321 5.321 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.513 6.513 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.094 0.906 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.816 3.184 15 H -0.197 1.197 16 H -0.192 1.192 17 H -0.199 1.199 18 N -0.349 5.349 19 C 0.361 3.639 20 O -0.447 6.447 21 C -0.102 4.102 22 C -0.136 4.136 23 C -0.108 4.108 24 C -0.053 4.053 25 N -0.176 5.176 26 H 0.281 0.719 27 C -0.027 4.027 28 C -0.249 4.249 29 C -0.082 4.082 30 N -0.154 5.154 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.246 0.754 42 H 0.173 0.827 43 H 0.196 0.804 44 H 0.246 0.754 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.502 -1.660 -22.014 26.414 hybrid contribution 0.852 -0.931 -0.559 1.381 sum -13.650 -2.591 -22.573 26.506 Atomic orbital electron populations 1.22061 0.92703 1.03102 1.03047 1.21144 0.95128 0.97077 0.82869 0.90860 1.22387 0.86144 1.00540 0.98218 1.60031 1.10362 1.57511 1.04181 1.21566 0.90208 0.99143 0.95808 1.20942 0.90761 0.82196 0.83809 1.90506 1.72886 1.52814 1.35052 1.41904 1.06827 1.51560 1.20598 1.19646 0.83113 1.36958 1.06735 0.90638 1.26027 1.04906 0.95753 0.94464 1.69669 1.38279 1.38457 1.09623 0.84942 0.76855 0.78268 0.78347 1.19695 1.19243 1.19874 1.45877 1.65354 1.14595 1.09085 1.18027 0.76928 0.85639 0.83292 1.90722 1.52486 1.16081 1.85392 1.20897 1.04150 0.90403 0.94749 1.21848 0.98519 1.01922 0.91305 1.20775 0.99213 0.90436 1.00410 1.19382 1.01277 0.92859 0.91813 1.41688 1.56140 1.07420 1.12387 0.71871 1.22684 0.98170 0.89808 0.91994 1.21921 1.11436 0.93477 0.98061 1.20662 1.02482 0.96511 0.88499 1.66769 1.09061 1.07795 1.31731 0.91147 0.89250 0.93284 0.87574 0.92572 0.84119 0.87243 0.91085 0.76855 0.91233 0.75411 0.82665 0.80447 0.75394 0.82287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.48 71.98 0.68 -2.25 16 2 C 0.14 3.60 2.88 44.99 0.13 3.73 16 3 H 0.07 2.25 7.58 -2.39 -0.02 2.23 16 4 C 0.06 1.34 5.30 86.30 0.46 1.80 16 5 N -0.69 -23.41 6.12 -517.93 -3.17 -26.57 16 6 C 0.06 2.30 6.17 85.56 0.53 2.83 16 7 C 0.44 21.65 7.82 87.66 0.69 22.34 16 8 O -0.63 -36.79 15.78 -3.07 -0.05 -36.84 16 9 N -0.57 -30.17 5.29 -307.00 -1.62 -31.79 16 10 C -0.33 -19.57 9.68 84.04 0.81 -18.76 16 11 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 12 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 13 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 14 Si 0.99 43.74 29.55 68.60 2.03 45.77 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 N -0.70 -19.72 4.34 -445.20 -1.93 -21.66 16 19 C 0.58 18.44 7.77 86.85 0.67 19.12 16 20 O -0.57 -20.59 15.96 -3.80 -0.06 -20.65 16 21 C 0.04 1.32 6.74 42.03 0.28 1.60 16 22 C -0.11 -2.70 9.60 22.62 0.22 -2.49 16 23 C -0.08 -1.39 10.18 22.49 0.23 -1.16 16 24 C 0.06 1.10 7.29 39.25 0.29 1.38 16 25 N -0.57 -5.57 6.05 -187.39 -1.13 -6.71 16 26 H 0.44 0.80 8.96 -92.71 -0.83 -0.03 16 27 C 0.10 0.96 11.81 83.03 0.98 1.94 16 28 C -0.22 -4.13 11.08 23.54 0.26 -3.87 16 29 C 0.06 1.39 7.52 41.94 0.32 1.70 16 30 N -0.44 -13.11 9.57 -174.24 -1.67 -14.77 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.34 12.71 7.28 -89.69 -0.65 12.05 16 37 H 0.11 3.42 8.14 -2.38 -0.02 3.40 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 40 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 41 H 0.41 11.17 7.46 -92.71 -0.69 10.48 16 42 H 0.16 3.43 7.61 -2.91 -0.02 3.41 16 43 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 44 H 0.23 -0.14 8.06 -2.91 -0.02 -0.17 16 45 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -84.36 389.27 -2.14 -86.50 By element: Atomic # 1 Polarization: 50.74 SS G_CDS: -1.83 Total: 48.91 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 7.01 Total: 27.74 kcal Atomic # 7 Polarization: -142.19 SS G_CDS: -9.24 Total: -151.44 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -0.11 Total: -57.48 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -84.36 -2.14 -86.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754276636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.157 kcal (2) G-P(sol) polarization free energy of solvation -84.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.26 seconds