Wall clock time and date at job start Wed Apr 1 2020 03:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47214 * 2 1 4 4 N 1.46500 * 109.47440 * 120.00399 * 2 1 3 5 5 C 1.36930 * 119.99981 * 275.00164 * 4 2 1 6 6 H 1.08002 * 120.00321 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99976 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00083 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99773 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46935 * 60.00226 * 9 7 5 11 11 H 1.48509 * 109.46737 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47470 * 299.99894 * 9 7 5 13 13 C 1.52999 * 109.46898 * 240.00567 * 2 1 3 14 14 H 1.08995 * 110.88856 * 302.42699 * 13 2 1 15 15 C 1.55154 * 111.00716 * 66.34946 * 13 2 1 16 16 C 1.54334 * 103.02476 * 153.37981 * 15 13 2 17 17 N 1.47023 * 107.26266 * 338.14050 * 16 15 13 18 18 C 1.34776 * 125.64657 * 178.84539 * 17 16 15 19 19 O 1.21652 * 119.99804 * 179.69282 * 18 17 16 20 20 C 1.47048 * 120.00241 * 359.69559 * 18 17 16 21 21 C 1.35885 * 125.43421 * 179.97438 * 20 18 17 22 22 C 1.41576 * 107.74399 * 179.73666 * 21 20 18 23 23 C 1.40127 * 133.35350 * 180.02562 * 22 21 20 24 24 C 1.36610 * 119.81286 * 179.97438 * 23 22 21 25 25 F 1.35101 * 119.71528 * 179.97438 * 24 23 22 26 26 C 1.39118 * 120.56693 * 359.97438 * 24 23 22 27 27 C 1.37665 * 120.62669 * 0.02562 * 26 24 23 28 28 C 1.39218 * 119.83965 * 0.02562 * 27 26 24 29 29 N 1.37573 * 133.14986 * 180.02562 * 28 27 26 30 30 H 0.96997 * 125.61047 * 359.97438 * 29 28 27 31 31 C 1.47422 * 108.70290 * 358.58518 * 17 16 15 32 32 H 1.08996 * 109.47417 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47028 * 299.99487 * 1 2 3 34 34 H 1.08998 * 109.47291 * 59.99513 * 1 2 3 35 35 H 0.97003 * 119.99729 * 94.99796 * 4 2 1 36 36 H 0.97002 * 120.00004 * 180.02562 * 8 7 5 37 37 H 1.08998 * 110.72337 * 271.94121 * 15 13 2 38 38 H 1.09007 * 110.72126 * 35.03361 * 15 13 2 39 39 H 1.09000 * 109.99690 * 218.66658 * 16 15 13 40 40 H 1.09007 * 109.78068 * 97.49488 * 16 15 13 41 41 H 1.08005 * 126.12537 * 359.75073 * 21 20 18 42 42 H 1.08001 * 120.08947 * 0.02562 * 23 22 21 43 43 H 1.08000 * 119.69104 * 180.02562 * 26 24 23 44 44 H 1.07998 * 120.08331 * 179.97438 * 27 26 24 45 45 H 1.09004 * 110.36320 * 143.19373 * 31 17 16 46 46 H 1.08997 * 110.36701 * 265.40230 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0077 2.3757 6 1 1.8927 1.0403 2.4242 7 6 2.6115 -0.6622 3.5091 8 7 2.9245 -1.9392 3.4499 9 14 2.7905 0.2698 5.1181 10 1 1.4685 0.8074 5.5284 11 1 3.2983 -0.6491 6.1685 12 1 3.7465 1.3915 4.9367 13 6 2.0399 -0.7211 -1.2493 14 1 1.6546 -1.7397 -1.2946 15 6 1.6775 0.0690 -2.5345 16 6 2.7786 -0.3585 -3.5278 17 7 3.9164 -0.8462 -2.7345 18 6 5.0706 -1.3319 -3.2328 19 8 5.9499 -1.7037 -2.4788 20 6 5.2671 -1.4125 -4.6879 21 6 6.3820 -1.8809 -5.3076 22 6 6.1675 -1.7953 -6.7044 23 6 6.9488 -2.1260 -7.8196 24 6 6.4564 -1.9240 -9.0778 25 9 7.2115 -2.2431 -10.1517 26 6 5.1841 -1.3926 -9.2627 27 6 4.3989 -1.0604 -8.1819 28 6 4.8797 -1.2562 -6.8901 29 7 4.3457 -1.0287 -5.6428 30 1 3.4663 -0.6607 -5.4635 31 6 3.5880 -0.7101 -1.3038 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 2.2491 -1.6319 1.1524 36 1 3.2472 -2.3967 4.2421 37 1 0.6920 -0.2199 -2.8998 38 1 1.7199 1.1428 -2.3519 39 1 3.0868 0.4944 -4.1324 40 1 2.4060 -1.1561 -4.1708 41 1 7.2722 -2.2523 -4.8215 42 1 7.9371 -2.5402 -7.6848 43 1 4.8087 -1.2392 -10.2637 44 1 3.4126 -0.6480 -8.3356 45 1 3.9934 -1.5503 -0.7400 46 1 3.9764 0.2305 -0.9133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754797846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:49 Heat of formation + Delta-G solvation = -0.075111 kcal Electronic energy + Delta-G solvation = -29238.341084 eV Core-core repulsion = 25043.342221 eV Total energy + Delta-G solvation = -4194.998864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.07908 -42.00753 -39.93701 -37.94879 -36.86832 -35.36077 -32.78004 -32.48345 -30.80200 -29.84967 -29.44811 -28.65134 -28.15014 -25.00074 -24.00328 -23.25925 -22.35800 -21.66741 -21.22597 -20.11826 -19.77284 -18.08367 -17.86473 -17.32145 -17.01592 -16.30904 -16.06644 -15.87110 -15.55675 -15.12778 -14.76541 -14.57425 -14.35183 -14.04092 -13.89533 -13.72594 -13.54659 -13.46787 -13.20001 -12.90458 -12.85386 -12.76511 -12.28906 -12.18671 -11.81029 -11.61923 -11.43069 -11.33992 -10.95941 -10.87034 -10.70114 -10.65783 -10.35354 -10.31080 -10.22869 -9.95653 -9.66899 -8.94968 -8.82552 -8.52519 -8.18419 -7.01027 -5.78736 -3.08496 0.31171 1.02951 1.76293 2.48168 2.81204 3.12299 3.34612 3.42511 3.47146 3.48407 3.94361 4.16078 4.20202 4.37842 4.51105 4.52218 4.66622 4.71392 4.78812 4.89103 4.93515 5.05158 5.17384 5.25963 5.45214 5.52644 5.53357 5.60031 5.71016 5.76335 5.77961 5.79870 5.82557 5.86865 6.04175 6.07374 6.17935 6.25283 6.28118 6.30500 6.44557 6.53568 6.61589 6.76464 6.94836 6.99021 7.33158 7.66580 7.95408 8.38872 9.50373 10.05927 10.40230 11.43488 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.002041 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.590122 B =13714.409348 C =14628.844199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.724 5.724 5 C -0.242 4.242 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.906 3.094 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.101 4.101 14 H 0.083 0.917 15 C -0.122 4.122 16 C 0.086 3.914 17 N -0.615 5.615 18 C 0.591 3.409 19 O -0.512 6.512 20 C 0.038 3.962 21 C -0.112 4.112 22 C -0.092 4.092 23 C -0.097 4.097 24 C 0.069 3.931 25 F -0.143 7.143 26 C -0.124 4.124 27 C -0.098 4.098 28 C 0.096 3.904 29 N -0.578 5.578 30 H 0.421 0.579 31 C 0.120 3.880 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.036 0.964 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.160 0.840 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.133 0.867 45 H 0.089 0.911 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 2.730 -26.800 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.365 5.365 5 C -0.373 4.373 6 H 0.087 0.913 7 C -0.207 4.207 8 N -0.578 5.578 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.160 4.160 16 C -0.037 4.037 17 N -0.349 5.349 18 C 0.379 3.621 19 O -0.387 6.387 20 C -0.072 4.072 21 C -0.139 4.139 22 C -0.097 4.097 23 C -0.117 4.117 24 C 0.049 3.951 25 F -0.122 7.122 26 C -0.144 4.144 27 C -0.119 4.119 28 C -0.014 4.014 29 N -0.187 5.187 30 H 0.266 0.734 31 C 0.000 4.000 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.218 0.782 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.178 0.822 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.151 0.849 45 H 0.107 0.893 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.470 2.661 -26.172 26.311 hybrid contribution -0.257 0.284 0.746 0.838 sum 0.213 2.945 -25.426 25.597 Atomic orbital electron populations 1.22448 0.99033 1.00934 1.00030 1.20149 0.91963 0.95148 0.85275 0.93238 1.42400 1.78180 1.10719 1.05230 1.19133 1.37067 0.93792 0.87272 0.91269 1.24740 1.01983 0.95950 0.98066 1.69639 1.50497 1.08632 1.29048 0.86296 0.77718 0.78656 0.83652 1.21341 1.21708 1.21255 1.22695 0.93934 1.00416 0.95112 0.89891 1.22674 0.97186 1.01484 0.94685 1.22277 0.87887 0.98069 0.95504 1.48530 1.14765 1.62150 1.09443 1.16801 0.81589 0.78371 0.85364 1.90910 1.41406 1.48302 1.58081 1.20287 0.91648 1.06440 0.88826 1.20895 0.98491 1.03487 0.91014 1.17884 0.94037 1.04490 0.93335 1.20305 1.00632 1.01077 0.89658 1.17005 0.90818 1.04145 0.83154 1.91495 1.75560 1.91058 1.54094 1.20825 0.92964 1.00940 0.99675 1.19896 1.00510 1.03212 0.88247 1.18395 0.94304 1.02325 0.86385 1.42730 1.17093 1.55231 1.03689 0.73440 1.22356 0.95259 1.03687 0.78737 0.93475 0.92655 0.94461 0.78228 0.93394 0.89668 0.89900 0.91484 0.91583 0.82195 0.84358 0.84247 0.84869 0.89256 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.34 37.16 0.35 -2.26 16 2 C 0.19 3.24 2.41 -67.93 -0.16 3.07 16 3 H 0.05 0.89 8.05 -51.93 -0.42 0.47 16 4 N -0.72 -16.90 4.82 -53.42 -0.26 -17.16 16 5 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 6 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 9 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C -0.10 -1.43 2.63 -88.47 -0.23 -1.66 16 14 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 15 C -0.12 -1.17 5.58 -24.89 -0.14 -1.31 16 16 C 0.09 0.77 5.10 -3.06 -0.02 0.76 16 17 N -0.61 -8.21 3.33 -171.91 -0.57 -8.78 16 18 C 0.59 8.83 7.83 -12.69 -0.10 8.73 16 19 O -0.51 -9.69 17.10 5.23 0.09 -9.60 16 20 C 0.04 0.46 6.82 -82.30 -0.56 -0.10 16 21 C -0.11 -1.31 10.53 -39.15 -0.41 -1.72 16 22 C -0.09 -0.97 6.16 -106.93 -0.66 -1.63 16 23 C -0.10 -0.91 10.03 -39.46 -0.40 -1.30 16 24 C 0.07 0.62 7.24 -39.84 -0.29 0.34 16 25 F -0.14 -1.39 17.25 2.25 0.04 -1.35 16 26 C -0.12 -0.91 9.99 -39.46 -0.39 -1.30 16 27 C -0.10 -0.70 10.07 -39.43 -0.40 -1.10 16 28 C 0.10 0.90 7.25 -83.94 -0.61 0.29 16 29 N -0.58 -5.30 5.69 -7.34 -0.04 -5.34 16 30 H 0.42 2.86 4.80 -40.82 -0.20 2.66 16 31 C 0.12 1.92 6.08 -2.53 -0.02 1.90 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.46 7.50 -51.93 -0.39 0.07 16 35 H 0.38 9.71 7.80 -40.82 -0.32 9.39 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.08 0.66 8.13 -51.93 -0.42 0.23 16 38 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16 39 H 0.07 0.48 7.24 -51.93 -0.38 0.10 16 40 H 0.07 0.48 7.02 -51.93 -0.36 0.12 16 41 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 42 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 45 H 0.09 1.70 8.04 -51.93 -0.42 1.28 16 46 H 0.08 1.31 8.04 -51.93 -0.42 0.90 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -32.42 382.02 -9.81 -42.23 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.24 Total: 8.38 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -4.28 Total: -4.26 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.15 Total: -58.24 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.42 -9.81 -42.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754797846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.151 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds