Wall clock time and date at job start Wed Apr 1 2020 03:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47214 * 2 1 4 4 N 1.46500 * 109.47440 * 120.00399 * 2 1 3 5 5 C 1.36930 * 119.99981 * 275.00164 * 4 2 1 6 6 H 1.08002 * 120.00321 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99976 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00083 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99773 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46935 * 60.00226 * 9 7 5 11 11 H 1.48509 * 109.46737 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47470 * 299.99894 * 9 7 5 13 13 C 1.52999 * 109.46898 * 240.00567 * 2 1 3 14 14 H 1.08995 * 110.88856 * 302.42699 * 13 2 1 15 15 C 1.55154 * 111.00716 * 66.34946 * 13 2 1 16 16 C 1.54334 * 103.02476 * 153.37981 * 15 13 2 17 17 N 1.47023 * 107.26266 * 338.14050 * 16 15 13 18 18 C 1.34776 * 125.64657 * 178.84539 * 17 16 15 19 19 O 1.21652 * 119.99804 * 179.69282 * 18 17 16 20 20 C 1.47048 * 120.00241 * 359.69559 * 18 17 16 21 21 C 1.35885 * 125.43421 * 179.97438 * 20 18 17 22 22 C 1.41576 * 107.74399 * 179.73666 * 21 20 18 23 23 C 1.40127 * 133.35350 * 180.02562 * 22 21 20 24 24 C 1.36610 * 119.81286 * 179.97438 * 23 22 21 25 25 F 1.35101 * 119.71528 * 179.97438 * 24 23 22 26 26 C 1.39118 * 120.56693 * 359.97438 * 24 23 22 27 27 C 1.37665 * 120.62669 * 0.02562 * 26 24 23 28 28 C 1.39218 * 119.83965 * 0.02562 * 27 26 24 29 29 N 1.37573 * 133.14986 * 180.02562 * 28 27 26 30 30 H 0.96997 * 125.61047 * 359.97438 * 29 28 27 31 31 C 1.47422 * 108.70290 * 358.58518 * 17 16 15 32 32 H 1.08996 * 109.47417 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47028 * 299.99487 * 1 2 3 34 34 H 1.08998 * 109.47291 * 59.99513 * 1 2 3 35 35 H 0.97003 * 119.99729 * 94.99796 * 4 2 1 36 36 H 0.97002 * 120.00004 * 180.02562 * 8 7 5 37 37 H 1.08998 * 110.72337 * 271.94121 * 15 13 2 38 38 H 1.09007 * 110.72126 * 35.03361 * 15 13 2 39 39 H 1.09000 * 109.99690 * 218.66658 * 16 15 13 40 40 H 1.09007 * 109.78068 * 97.49488 * 16 15 13 41 41 H 1.08005 * 126.12537 * 359.75073 * 21 20 18 42 42 H 1.08001 * 120.08947 * 0.02562 * 23 22 21 43 43 H 1.08000 * 119.69104 * 180.02562 * 26 24 23 44 44 H 1.07998 * 120.08331 * 179.97438 * 27 26 24 45 45 H 1.09004 * 110.36320 * 143.19373 * 31 17 16 46 46 H 1.08997 * 110.36701 * 265.40230 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0077 2.3757 6 1 1.8927 1.0403 2.4242 7 6 2.6115 -0.6622 3.5091 8 7 2.9245 -1.9392 3.4499 9 14 2.7905 0.2698 5.1181 10 1 1.4685 0.8074 5.5284 11 1 3.2983 -0.6491 6.1685 12 1 3.7465 1.3915 4.9367 13 6 2.0399 -0.7211 -1.2493 14 1 1.6546 -1.7397 -1.2946 15 6 1.6775 0.0690 -2.5345 16 6 2.7786 -0.3585 -3.5278 17 7 3.9164 -0.8462 -2.7345 18 6 5.0706 -1.3319 -3.2328 19 8 5.9499 -1.7037 -2.4788 20 6 5.2671 -1.4125 -4.6879 21 6 6.3820 -1.8809 -5.3076 22 6 6.1675 -1.7953 -6.7044 23 6 6.9488 -2.1260 -7.8196 24 6 6.4564 -1.9240 -9.0778 25 9 7.2115 -2.2431 -10.1517 26 6 5.1841 -1.3926 -9.2627 27 6 4.3989 -1.0604 -8.1819 28 6 4.8797 -1.2562 -6.8901 29 7 4.3457 -1.0287 -5.6428 30 1 3.4663 -0.6607 -5.4635 31 6 3.5880 -0.7101 -1.3038 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 2.2491 -1.6319 1.1524 36 1 3.2472 -2.3967 4.2421 37 1 0.6920 -0.2199 -2.8998 38 1 1.7199 1.1428 -2.3519 39 1 3.0868 0.4944 -4.1324 40 1 2.4060 -1.1561 -4.1708 41 1 7.2722 -2.2523 -4.8215 42 1 7.9371 -2.5402 -7.6848 43 1 4.8087 -1.2392 -10.2637 44 1 3.4126 -0.6480 -8.3356 45 1 3.9934 -1.5503 -0.7400 46 1 3.9764 0.2305 -0.9133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754797846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:48 Heat of formation + Delta-G solvation = -20.080590 kcal Electronic energy + Delta-G solvation = -29239.208587 eV Core-core repulsion = 25043.342221 eV Total energy + Delta-G solvation = -4195.866366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -49.78917 -42.81057 -40.99452 -39.15346 -37.61629 -36.86766 -34.35725 -33.36478 -32.21039 -30.71938 -30.31166 -29.96143 -29.32119 -26.11173 -25.73274 -24.07133 -23.26869 -22.75712 -22.08430 -21.12404 -21.04221 -19.30692 -18.75573 -18.60620 -17.98414 -17.45214 -17.02146 -16.72665 -16.52422 -16.44393 -15.94323 -15.61333 -15.39625 -15.18888 -15.02681 -14.84642 -14.58669 -14.34622 -14.17621 -14.14469 -13.96519 -13.61273 -13.59298 -13.44141 -13.12523 -12.86523 -12.69812 -12.38176 -12.31850 -12.26030 -12.06564 -11.97223 -11.79465 -11.55398 -11.47705 -11.34258 -11.07902 -10.92508 -9.93989 -9.27252 -8.98483 -8.91222 -7.92151 -5.19505 -0.45156 0.34934 0.90150 1.46188 1.48779 1.54523 1.56277 1.90671 2.10980 2.56702 2.65307 3.15602 3.36616 3.41820 3.50115 3.56562 3.63600 3.82476 3.92953 4.06462 4.10309 4.14971 4.23374 4.27362 4.31158 4.47695 4.54658 4.57807 4.62921 4.78790 4.81450 4.85662 4.90096 4.95660 5.01022 5.09760 5.15805 5.16395 5.19425 5.27121 5.40594 5.41291 5.47987 5.54101 5.65982 5.92468 6.25490 6.29999 6.32883 6.82085 7.35955 8.14277 8.34322 9.31173 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.002041 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.590122 B =13714.409348 C =14628.844199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 H 0.049 0.951 4 N -0.738 5.738 5 C -0.231 4.231 6 H 0.077 0.923 7 C -0.080 4.080 8 N -0.971 5.971 9 Si 0.967 3.033 10 H -0.276 1.276 11 H -0.301 1.301 12 H -0.280 1.280 13 C -0.093 4.093 14 H 0.079 0.921 15 C -0.108 4.108 16 C 0.079 3.921 17 N -0.612 5.612 18 C 0.586 3.414 19 O -0.570 6.570 20 C 0.024 3.976 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.108 4.108 24 C 0.059 3.941 25 F -0.149 7.149 26 C -0.116 4.116 27 C -0.088 4.088 28 C 0.098 3.902 29 N -0.561 5.561 30 H 0.434 0.566 31 C 0.124 3.876 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.370 0.630 36 H 0.248 0.752 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.152 0.848 42 H 0.142 0.858 43 H 0.169 0.831 44 H 0.173 0.827 45 H 0.042 0.958 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 4.797 -30.536 31.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.378 5.378 5 C -0.363 4.363 6 H 0.095 0.905 7 C -0.272 4.272 8 N -0.622 5.622 9 Si 0.797 3.203 10 H -0.202 1.202 11 H -0.227 1.227 12 H -0.207 1.207 13 C -0.113 4.113 14 H 0.097 0.903 15 C -0.146 4.146 16 C -0.042 4.042 17 N -0.344 5.344 18 C 0.376 3.624 19 O -0.450 6.450 20 C -0.086 4.086 21 C -0.147 4.147 22 C -0.119 4.119 23 C -0.128 4.128 24 C 0.039 3.961 25 F -0.128 7.128 26 C -0.136 4.136 27 C -0.108 4.108 28 C -0.013 4.013 29 N -0.172 5.172 30 H 0.281 0.719 31 C 0.002 3.998 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.201 0.799 36 H 0.057 0.943 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.170 0.830 42 H 0.160 0.840 43 H 0.186 0.814 44 H 0.190 0.810 45 H 0.061 0.939 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.315 4.799 -29.972 30.442 hybrid contribution 0.599 -0.327 1.727 1.857 sum -1.716 4.472 -28.245 28.648 Atomic orbital electron populations 1.22277 0.96845 1.00947 1.01215 1.20440 0.93263 0.94810 0.84486 0.93346 1.42652 1.78483 1.10250 1.06421 1.19551 1.34359 0.94109 0.88264 0.90486 1.25518 1.03424 0.96832 1.01446 1.69809 1.52897 1.10254 1.29253 0.85300 0.77943 0.77270 0.79806 1.20233 1.22735 1.20680 1.22503 0.91925 1.00760 0.96067 0.90300 1.22719 0.98975 1.01388 0.91564 1.22645 0.86042 1.00088 0.95432 1.48546 1.15581 1.61534 1.08781 1.17228 0.81223 0.77544 0.86403 1.90868 1.43425 1.50955 1.59719 1.19730 0.92839 1.08536 0.87500 1.20998 0.98365 1.03233 0.92102 1.17948 0.95343 1.05903 0.92714 1.20405 1.01057 1.01494 0.89841 1.17255 0.91661 1.04423 0.82723 1.91482 1.75921 1.91172 1.54244 1.21199 0.91852 0.99270 1.01276 1.20295 1.01879 1.01997 0.86632 1.18673 0.93735 1.01726 0.87126 1.42519 1.17014 1.54736 1.02919 0.71919 1.22070 0.96813 1.00725 0.80205 0.94045 0.94869 0.89795 0.79895 0.94341 0.86158 0.88712 0.88465 0.88852 0.83044 0.83973 0.81372 0.81008 0.93884 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.34 71.98 0.67 -3.83 16 2 C 0.18 6.09 2.41 44.99 0.11 6.20 16 3 H 0.05 1.68 8.05 -2.38 -0.02 1.66 16 4 N -0.74 -35.41 4.82 -322.94 -1.56 -36.97 16 5 C -0.23 -12.48 9.93 84.04 0.83 -11.65 16 6 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 7 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 8 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 9 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 C -0.09 -2.50 2.63 -9.40 -0.02 -2.52 16 14 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 15 C -0.11 -1.61 5.58 31.79 0.18 -1.43 16 16 C 0.08 1.13 5.10 86.73 0.44 1.58 16 17 N -0.61 -16.19 3.33 -816.05 -2.71 -18.91 16 18 C 0.59 18.19 7.83 86.55 0.68 18.86 16 19 O -0.57 -23.47 17.10 -4.20 -0.07 -23.54 16 20 C 0.02 0.58 6.82 39.91 0.27 0.85 16 21 C -0.12 -2.87 10.53 22.55 0.24 -2.63 16 22 C -0.11 -2.29 6.16 -21.36 -0.13 -2.43 16 23 C -0.11 -1.94 10.03 22.35 0.22 -1.72 16 24 C 0.06 0.95 7.24 22.10 0.16 1.11 16 25 F -0.15 -2.66 17.25 44.97 0.78 -1.88 16 26 C -0.12 -1.24 9.99 22.35 0.22 -1.02 16 27 C -0.09 -0.84 10.07 22.37 0.23 -0.62 16 28 C 0.10 1.54 7.25 39.11 0.28 1.82 16 29 N -0.56 -8.69 5.69 -177.14 -1.01 -9.69 16 30 H 0.43 3.96 4.80 -92.71 -0.44 3.52 16 31 C 0.12 4.13 6.08 86.86 0.53 4.66 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.70 7.50 -2.39 -0.02 1.68 16 35 H 0.37 19.64 7.80 -92.71 -0.72 18.92 16 36 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.12 1.07 8.13 -2.39 -0.02 1.05 16 38 H 0.09 1.26 8.01 -2.38 -0.02 1.24 16 39 H 0.10 0.89 7.24 -2.39 -0.02 0.88 16 40 H 0.09 0.90 7.02 -2.38 -0.02 0.88 16 41 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 44 H 0.17 0.35 8.06 -2.91 -0.02 0.33 16 45 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 46 H 0.06 2.13 8.04 -2.39 -0.02 2.11 16 Total: -1.00 -77.14 382.02 2.97 -74.16 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.14 Total: 25.17 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 5.38 Total: 3.10 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -4.99 Total: -125.59 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.07 Total: -23.54 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -77.14 2.97 -74.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754797846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.084 kcal (2) G-P(sol) polarization free energy of solvation -77.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds