Wall clock time and date at job start Wed Apr 1 2020 03:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46905 * 2 1 4 4 N 1.46504 * 109.46774 * 119.99351 * 2 1 3 5 5 C 1.36932 * 120.00080 * 275.00064 * 4 2 1 6 6 H 1.07995 * 120.00393 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99572 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00277 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99803 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46973 * 90.00163 * 9 7 5 11 11 H 1.48500 * 109.47099 * 210.00022 * 9 7 5 12 12 H 1.48497 * 109.47085 * 330.00140 * 9 7 5 13 13 C 1.53002 * 109.47180 * 239.99605 * 2 1 3 14 14 H 1.08998 * 110.91502 * 299.18121 * 13 2 1 15 15 C 1.55156 * 111.00111 * 175.27942 * 13 2 1 16 16 C 1.54310 * 102.86037 * 206.22832 * 15 13 2 17 17 N 1.47021 * 107.27864 * 22.53053 * 16 15 13 18 18 C 1.34770 * 125.64995 * 180.96640 * 17 16 15 19 19 O 1.21655 * 120.00106 * 179.69037 * 18 17 16 20 20 C 1.47060 * 120.00068 * 359.69458 * 18 17 16 21 21 C 1.35874 * 125.42944 * 179.97438 * 20 18 17 22 22 C 1.41587 * 107.74076 * 180.02562 * 21 20 18 23 23 C 1.40125 * 133.34857 * 179.97438 * 22 21 20 24 24 C 1.36604 * 119.81064 * 180.02562 * 23 22 21 25 25 F 1.35106 * 119.71827 * 179.97438 * 24 23 22 26 26 C 1.39125 * 120.56661 * 0.02562 * 24 23 22 27 27 C 1.37664 * 120.62347 * 0.23243 * 26 24 23 28 28 C 1.39223 * 119.83928 * 359.49435 * 27 26 24 29 29 N 1.37572 * 133.14641 * 180.16795 * 28 27 26 30 30 H 0.96995 * 125.61919 * 0.28819 * 29 28 27 31 31 C 1.47429 * 108.70184 * 0.70212 * 17 16 15 32 32 H 1.09003 * 109.47423 * 294.78205 * 1 2 3 33 33 H 1.08998 * 109.46798 * 54.77950 * 1 2 3 34 34 H 1.09002 * 109.47433 * 174.77768 * 1 2 3 35 35 H 0.97006 * 119.99251 * 95.00350 * 4 2 1 36 36 H 0.97006 * 120.00026 * 179.97438 * 8 7 5 37 37 H 1.09000 * 110.72455 * 324.78792 * 15 13 2 38 38 H 1.09004 * 110.71853 * 88.06094 * 15 13 2 39 39 H 1.09000 * 109.99147 * 263.04634 * 16 15 13 40 40 H 1.09003 * 109.77559 * 141.88772 * 16 15 13 41 41 H 1.08006 * 126.13248 * 0.02562 * 21 20 18 42 42 H 1.08001 * 120.09096 * 0.02562 * 23 22 21 43 43 H 1.08003 * 119.68948 * 179.97438 * 26 24 23 44 44 H 1.08001 * 120.08071 * 179.73938 * 27 26 24 45 45 H 1.08993 * 110.36829 * 94.93530 * 31 17 16 46 46 H 1.09000 * 110.36653 * 217.15256 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8918 1.0405 2.4243 7 6 2.6121 -0.6615 3.5091 8 7 2.9261 -1.9383 3.4499 9 14 2.7912 0.2706 5.1180 10 1 1.5238 0.1795 5.8865 11 1 3.8961 -0.3225 5.9134 12 1 3.0960 1.6958 4.8331 13 6 2.0400 -0.7213 -1.2492 14 1 1.7017 -1.7574 -1.2657 15 6 3.5864 -0.6396 -1.3461 16 6 3.8427 -0.7656 -2.8625 17 7 2.6073 -0.3608 -3.5493 18 6 2.4180 -0.3494 -4.8836 19 8 1.3474 0.0010 -5.3431 20 6 3.5055 -0.7606 -5.7841 21 6 3.4354 -0.7918 -7.1407 22 6 4.6863 -1.2431 -7.6270 23 6 5.1928 -1.4707 -8.9135 24 6 6.4736 -1.9192 -9.0696 25 9 6.9598 -2.1386 -10.3109 26 6 7.2813 -2.1531 -7.9612 27 6 6.8031 -1.9414 -6.6878 28 6 5.5028 -1.4790 -6.5041 29 7 4.7608 -1.1770 -5.3857 30 1 5.0682 -1.2460 -4.4683 31 6 1.6079 0.0245 -2.5363 32 1 -0.3634 0.4308 0.9330 33 1 -0.3633 0.5927 -0.8395 34 1 -0.3634 -1.0234 -0.0935 35 1 2.2490 -1.6317 1.1527 36 1 3.2501 -2.3954 4.2418 37 1 3.9465 0.3174 -0.9686 38 1 4.0507 -1.4667 -0.8088 39 1 4.0859 -1.7978 -3.1149 40 1 4.6614 -0.1078 -3.1541 41 1 2.5791 -0.5209 -7.7406 42 1 4.5722 -1.2920 -9.7792 43 1 8.2917 -2.5081 -8.1010 44 1 7.4363 -2.1298 -5.8335 45 1 1.6275 1.1023 -2.3749 46 1 0.6123 -0.2941 -2.8453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754797849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:04 Heat of formation + Delta-G solvation = -1.607987 kcal Electronic energy + Delta-G solvation = -29150.425150 eV Core-core repulsion = 24955.359816 eV Total energy + Delta-G solvation = -4195.065334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.08721 -42.03796 -40.01682 -37.99914 -36.89705 -35.40181 -32.78857 -32.47716 -30.84965 -29.93051 -29.45412 -29.09824 -27.57832 -25.31801 -24.00326 -23.19670 -22.36400 -21.61144 -21.28720 -20.19784 -19.78013 -18.10813 -17.87275 -17.35836 -17.08595 -16.42773 -16.15380 -15.88722 -15.60839 -15.20473 -14.62450 -14.61332 -14.32597 -14.05730 -13.94277 -13.66236 -13.54772 -13.48163 -13.25642 -12.91962 -12.88678 -12.70652 -12.55042 -12.27837 -11.85836 -11.63161 -11.36545 -11.32895 -10.97322 -10.85869 -10.70816 -10.55685 -10.38270 -10.37249 -10.30429 -9.97385 -9.72694 -8.99919 -8.94940 -8.55085 -8.20762 -7.05721 -5.85332 -3.14129 0.28400 1.02137 1.70712 2.44715 2.73411 3.03778 3.32599 3.37339 3.43199 3.44257 3.92125 4.13712 4.18460 4.46929 4.48545 4.52239 4.67313 4.76612 4.80005 4.88606 4.94706 5.05400 5.15770 5.23859 5.41630 5.49799 5.52651 5.55201 5.72645 5.74056 5.78706 5.80700 5.82407 5.87349 5.95923 6.07658 6.17215 6.19692 6.23870 6.32263 6.43520 6.54169 6.60110 6.77205 6.93283 7.00867 7.20691 7.62527 7.81908 8.32987 9.44736 10.00709 10.35627 11.37111 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.002020 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.379251 B =13855.441090 C =14991.689177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.113 4.113 16 C 0.082 3.918 17 N -0.612 5.612 18 C 0.594 3.406 19 O -0.521 6.521 20 C 0.035 3.965 21 C -0.111 4.111 22 C -0.094 4.094 23 C -0.098 4.098 24 C 0.070 3.930 25 F -0.143 7.143 26 C -0.123 4.123 27 C -0.097 4.097 28 C 0.098 3.902 29 N -0.577 5.577 30 H 0.423 0.577 31 C 0.114 3.886 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.046 0.954 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.160 0.840 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.074 0.926 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.230 0.116 -22.447 23.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.151 4.151 16 C -0.041 4.041 17 N -0.346 5.346 18 C 0.383 3.617 19 O -0.398 6.398 20 C -0.075 4.075 21 C -0.138 4.138 22 C -0.099 4.099 23 C -0.118 4.118 24 C 0.050 3.950 25 F -0.122 7.122 26 C -0.143 4.143 27 C -0.118 4.118 28 C -0.013 4.013 29 N -0.186 5.186 30 H 0.268 0.732 31 C -0.007 4.007 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.177 0.823 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.093 0.907 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.673 0.444 -22.462 23.436 hybrid contribution 0.507 -0.031 1.245 1.345 sum 7.181 0.413 -21.217 22.403 Atomic orbital electron populations 1.22502 0.99101 1.00712 1.00588 1.20129 0.91926 0.95146 0.85287 0.93178 1.42363 1.78201 1.10642 1.05105 1.19205 1.36511 0.93885 0.87266 0.91188 1.24725 1.02159 0.95969 0.98025 1.69651 1.50863 1.08677 1.28904 0.86219 0.77326 0.78803 0.84007 1.21745 1.21815 1.20784 1.22702 0.94782 1.00536 0.94181 0.89852 1.22582 0.96896 1.04630 0.91012 1.22407 0.86996 0.99065 0.95601 1.48485 1.15863 1.65426 1.04785 1.16803 0.86277 0.78450 0.80212 1.90865 1.25297 1.48344 1.75245 1.20203 0.85768 1.07177 0.94350 1.20862 0.97518 1.03676 0.91758 1.17873 0.94592 1.05417 0.91994 1.20283 0.94281 1.00384 0.96824 1.17013 0.93216 1.05065 0.79748 1.91497 1.88225 1.92939 1.39531 1.20845 1.00460 1.02312 0.90713 1.19938 0.92405 1.01966 0.97442 1.18399 0.93835 1.02519 0.86521 1.42768 1.10709 1.56684 1.08464 0.73236 1.22405 0.92190 0.99782 0.86370 0.92443 0.94312 0.93522 0.78311 0.93513 0.89704 0.89032 0.91407 0.91440 0.82271 0.84395 0.84180 0.84729 0.90741 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.22 37.16 0.34 -2.47 16 2 C 0.19 3.23 2.40 -67.93 -0.16 3.07 16 3 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 4 N -0.72 -16.27 4.90 -53.42 -0.26 -16.53 16 5 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 6 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -26.71 13.06 55.49 0.72 -25.98 16 9 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C -0.10 -1.43 2.63 -88.47 -0.23 -1.66 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 15 C -0.11 -1.41 6.21 -24.90 -0.15 -1.56 16 16 C 0.08 0.82 5.09 -3.07 -0.02 0.80 16 17 N -0.61 -7.46 3.33 -171.93 -0.57 -8.03 16 18 C 0.59 7.97 7.83 -12.69 -0.10 7.87 16 19 O -0.52 -8.52 17.09 5.23 0.09 -8.43 16 20 C 0.04 0.40 6.82 -82.30 -0.56 -0.16 16 21 C -0.11 -1.21 10.53 -39.15 -0.41 -1.62 16 22 C -0.09 -0.95 6.16 -106.93 -0.66 -1.61 16 23 C -0.10 -0.89 10.03 -39.46 -0.40 -1.29 16 24 C 0.07 0.63 7.24 -39.84 -0.29 0.34 16 25 F -0.14 -1.38 17.25 2.25 0.04 -1.34 16 26 C -0.12 -0.93 9.99 -39.46 -0.39 -1.32 16 27 C -0.10 -0.73 10.07 -39.43 -0.40 -1.12 16 28 C 0.10 0.92 7.25 -83.94 -0.61 0.31 16 29 N -0.58 -5.35 5.69 -7.34 -0.04 -5.39 16 30 H 0.42 3.14 4.80 -40.82 -0.20 2.94 16 31 C 0.11 1.48 5.48 -2.53 -0.01 1.47 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.04 0.54 7.58 -51.93 -0.39 0.15 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.38 9.24 7.80 -40.82 -0.32 8.92 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 0.58 7.08 -51.93 -0.37 0.21 16 40 H 0.07 0.55 7.18 -51.93 -0.37 0.18 16 41 H 0.16 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 46 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -30.77 382.13 -9.83 -40.60 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.25 Total: 8.58 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -4.30 Total: -5.69 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.15 Total: -55.94 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.77 -9.83 -40.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754797849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.992 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds