Wall clock time and date at job start Wed Apr 1 2020 03:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46905 * 2 1 4 4 N 1.46504 * 109.46774 * 119.99351 * 2 1 3 5 5 C 1.36932 * 120.00080 * 275.00064 * 4 2 1 6 6 H 1.07995 * 120.00393 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99572 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00277 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99803 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46973 * 90.00163 * 9 7 5 11 11 H 1.48500 * 109.47099 * 210.00022 * 9 7 5 12 12 H 1.48497 * 109.47085 * 330.00140 * 9 7 5 13 13 C 1.53002 * 109.47180 * 239.99605 * 2 1 3 14 14 H 1.08998 * 110.91502 * 299.18121 * 13 2 1 15 15 C 1.55156 * 111.00111 * 175.27942 * 13 2 1 16 16 C 1.54310 * 102.86037 * 206.22832 * 15 13 2 17 17 N 1.47021 * 107.27864 * 22.53053 * 16 15 13 18 18 C 1.34770 * 125.64995 * 180.96640 * 17 16 15 19 19 O 1.21655 * 120.00106 * 179.69037 * 18 17 16 20 20 C 1.47060 * 120.00068 * 359.69458 * 18 17 16 21 21 C 1.35874 * 125.42944 * 179.97438 * 20 18 17 22 22 C 1.41587 * 107.74076 * 180.02562 * 21 20 18 23 23 C 1.40125 * 133.34857 * 179.97438 * 22 21 20 24 24 C 1.36604 * 119.81064 * 180.02562 * 23 22 21 25 25 F 1.35106 * 119.71827 * 179.97438 * 24 23 22 26 26 C 1.39125 * 120.56661 * 0.02562 * 24 23 22 27 27 C 1.37664 * 120.62347 * 0.23243 * 26 24 23 28 28 C 1.39223 * 119.83928 * 359.49435 * 27 26 24 29 29 N 1.37572 * 133.14641 * 180.16795 * 28 27 26 30 30 H 0.96995 * 125.61919 * 0.28819 * 29 28 27 31 31 C 1.47429 * 108.70184 * 0.70212 * 17 16 15 32 32 H 1.09003 * 109.47423 * 294.78205 * 1 2 3 33 33 H 1.08998 * 109.46798 * 54.77950 * 1 2 3 34 34 H 1.09002 * 109.47433 * 174.77768 * 1 2 3 35 35 H 0.97006 * 119.99251 * 95.00350 * 4 2 1 36 36 H 0.97006 * 120.00026 * 179.97438 * 8 7 5 37 37 H 1.09000 * 110.72455 * 324.78792 * 15 13 2 38 38 H 1.09004 * 110.71853 * 88.06094 * 15 13 2 39 39 H 1.09000 * 109.99147 * 263.04634 * 16 15 13 40 40 H 1.09003 * 109.77559 * 141.88772 * 16 15 13 41 41 H 1.08006 * 126.13248 * 0.02562 * 21 20 18 42 42 H 1.08001 * 120.09096 * 0.02562 * 23 22 21 43 43 H 1.08003 * 119.68948 * 179.97438 * 26 24 23 44 44 H 1.08001 * 120.08071 * 179.73938 * 27 26 24 45 45 H 1.08993 * 110.36829 * 94.93530 * 31 17 16 46 46 H 1.09000 * 110.36653 * 217.15256 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8918 1.0405 2.4243 7 6 2.6121 -0.6615 3.5091 8 7 2.9261 -1.9383 3.4499 9 14 2.7912 0.2706 5.1180 10 1 1.5238 0.1795 5.8865 11 1 3.8961 -0.3225 5.9134 12 1 3.0960 1.6958 4.8331 13 6 2.0400 -0.7213 -1.2492 14 1 1.7017 -1.7574 -1.2657 15 6 3.5864 -0.6396 -1.3461 16 6 3.8427 -0.7656 -2.8625 17 7 2.6073 -0.3608 -3.5493 18 6 2.4180 -0.3494 -4.8836 19 8 1.3474 0.0010 -5.3431 20 6 3.5055 -0.7606 -5.7841 21 6 3.4354 -0.7918 -7.1407 22 6 4.6863 -1.2431 -7.6270 23 6 5.1928 -1.4707 -8.9135 24 6 6.4736 -1.9192 -9.0696 25 9 6.9598 -2.1386 -10.3109 26 6 7.2813 -2.1531 -7.9612 27 6 6.8031 -1.9414 -6.6878 28 6 5.5028 -1.4790 -6.5041 29 7 4.7608 -1.1770 -5.3857 30 1 5.0682 -1.2460 -4.4683 31 6 1.6079 0.0245 -2.5363 32 1 -0.3634 0.4308 0.9330 33 1 -0.3633 0.5927 -0.8395 34 1 -0.3634 -1.0234 -0.0935 35 1 2.2490 -1.6317 1.1527 36 1 3.2501 -2.3954 4.2418 37 1 3.9465 0.3174 -0.9686 38 1 4.0507 -1.4667 -0.8088 39 1 4.0859 -1.7978 -3.1149 40 1 4.6614 -0.1078 -3.1541 41 1 2.5791 -0.5209 -7.7406 42 1 4.5722 -1.2920 -9.7792 43 1 8.2917 -2.5081 -8.1010 44 1 7.4363 -2.1298 -5.8335 45 1 1.6275 1.1023 -2.3749 46 1 0.6123 -0.2941 -2.8453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754797849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:02 Heat of formation + Delta-G solvation = -18.767547 kcal Electronic energy + Delta-G solvation = -29151.169244 eV Core-core repulsion = 24955.359816 eV Total energy + Delta-G solvation = -4195.809428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.78949 -42.80115 -41.00508 -39.13879 -37.61193 -36.87078 -34.31615 -33.35173 -32.14294 -31.00572 -30.27632 -30.17575 -28.78796 -26.51518 -25.51178 -24.08257 -23.27309 -22.70441 -22.10322 -21.11497 -21.05845 -19.21106 -18.84826 -18.59984 -17.98732 -17.54822 -17.01771 -16.71756 -16.51177 -16.41026 -15.93535 -15.58360 -15.24569 -15.18526 -14.94905 -14.87469 -14.70416 -14.30548 -14.15970 -14.04701 -13.89715 -13.83388 -13.60144 -13.51159 -13.21803 -12.91361 -12.79719 -12.34995 -12.30635 -12.18195 -12.01731 -11.96876 -11.73653 -11.56431 -11.48619 -11.36192 -11.07457 -10.91628 -9.93837 -9.27438 -8.96930 -8.90870 -7.90792 -5.17288 -0.44349 0.34534 0.90741 1.49180 1.50244 1.57256 1.58094 1.90559 2.12493 2.58237 2.65017 3.13200 3.35867 3.43377 3.48574 3.57345 3.60458 3.79276 3.92950 4.05708 4.07453 4.20126 4.22134 4.29665 4.30662 4.38814 4.55306 4.56818 4.60977 4.69075 4.79436 4.82434 4.90341 4.95051 5.00049 5.06644 5.15228 5.16960 5.18692 5.26542 5.37329 5.42178 5.50013 5.56283 5.60947 5.92718 6.21758 6.29423 6.31899 6.81310 7.39049 8.14835 8.38170 9.32283 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.002020 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.379251 B =13855.441090 C =14991.689177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.183 3.817 3 H 0.050 0.950 4 N -0.730 5.730 5 C -0.229 4.229 6 H 0.073 0.927 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.963 3.037 10 H -0.293 1.293 11 H -0.298 1.298 12 H -0.270 1.270 13 C -0.094 4.094 14 H 0.078 0.922 15 C -0.109 4.109 16 C 0.088 3.912 17 N -0.611 5.611 18 C 0.595 3.405 19 O -0.560 6.560 20 C 0.019 3.981 21 C -0.114 4.114 22 C -0.113 4.113 23 C -0.105 4.105 24 C 0.059 3.941 25 F -0.149 7.149 26 C -0.117 4.117 27 C -0.093 4.093 28 C 0.095 3.905 29 N -0.567 5.567 30 H 0.431 0.569 31 C 0.120 3.880 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.374 0.626 36 H 0.249 0.751 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.160 0.840 42 H 0.147 0.853 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.079 0.921 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 0.468 -23.409 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.068 0.932 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.091 0.909 7 C -0.266 4.266 8 N -0.618 5.618 9 Si 0.793 3.207 10 H -0.221 1.221 11 H -0.225 1.225 12 H -0.195 1.195 13 C -0.114 4.114 14 H 0.097 0.903 15 C -0.147 4.147 16 C -0.035 4.035 17 N -0.343 5.343 18 C 0.384 3.616 19 O -0.439 6.439 20 C -0.091 4.091 21 C -0.141 4.141 22 C -0.118 4.118 23 C -0.124 4.124 24 C 0.039 3.961 25 F -0.128 7.128 26 C -0.137 4.137 27 C -0.114 4.114 28 C -0.016 4.016 29 N -0.177 5.177 30 H 0.277 0.723 31 C -0.002 4.002 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.206 0.794 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.178 0.822 42 H 0.165 0.835 43 H 0.183 0.817 44 H 0.182 0.818 45 H 0.097 0.903 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.258 0.827 -23.435 24.861 hybrid contribution 0.022 -0.124 1.419 1.425 sum 8.280 0.702 -22.015 23.531 Atomic orbital electron populations 1.22385 0.98233 1.00886 1.00661 1.20298 0.92345 0.95006 0.84958 0.93230 1.42503 1.78307 1.10285 1.05870 1.19538 1.34233 0.94068 0.88285 0.90858 1.25409 1.03419 0.96804 1.00973 1.69787 1.52840 1.10010 1.29161 0.85287 0.76609 0.78209 0.80549 1.22112 1.22490 1.19538 1.22473 0.96062 0.99812 0.93014 0.90347 1.22492 0.95396 1.03979 0.92869 1.22477 0.86673 1.00912 0.93389 1.48474 1.16343 1.65029 1.04497 1.17013 0.86255 0.77841 0.80443 1.90838 1.26888 1.50248 1.75895 1.19886 0.86237 1.08899 0.94063 1.21009 0.98008 1.03194 0.91879 1.17975 0.94582 1.06431 0.92795 1.20416 0.94706 1.00359 0.96934 1.17241 0.93489 1.05396 0.80021 1.91484 1.88253 1.93017 1.40027 1.21171 1.01326 1.01078 0.90149 1.20271 0.91784 1.00862 0.98433 1.18676 0.94500 1.02298 0.86149 1.42629 1.09876 1.56307 1.08912 0.72257 1.22265 0.92278 0.99800 0.85903 0.94543 0.91455 0.93848 0.79431 0.94249 0.90327 0.89785 0.89462 0.88965 0.82227 0.83500 0.81694 0.81756 0.90283 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 9.22 71.98 0.66 -4.60 16 2 C 0.18 6.25 2.40 44.99 0.11 6.36 16 3 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 4 N -0.73 -32.91 4.90 -322.93 -1.58 -34.49 16 5 C -0.23 -11.79 9.93 84.04 0.83 -10.96 16 6 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 7 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 8 N -0.97 -56.12 13.06 21.65 0.28 -55.84 16 9 Si 0.96 44.33 29.55 68.60 2.03 46.36 16 10 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 C -0.09 -2.53 2.63 -9.40 -0.02 -2.56 16 14 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 15 C -0.11 -2.57 6.21 31.78 0.20 -2.37 16 16 C 0.09 1.53 5.09 86.72 0.44 1.97 16 17 N -0.61 -13.98 3.33 -816.09 -2.72 -16.69 16 18 C 0.59 15.44 7.83 86.56 0.68 16.12 16 19 O -0.56 -18.29 17.09 -4.20 -0.07 -18.37 16 20 C 0.02 0.42 6.82 39.92 0.27 0.69 16 21 C -0.11 -2.40 10.53 22.55 0.24 -2.17 16 22 C -0.11 -2.15 6.16 -21.36 -0.13 -2.28 16 23 C -0.10 -1.77 10.03 22.35 0.22 -1.55 16 24 C 0.06 0.94 7.24 22.10 0.16 1.10 16 25 F -0.15 -2.65 17.25 44.97 0.78 -1.87 16 26 C -0.12 -1.41 9.99 22.35 0.22 -1.19 16 27 C -0.09 -1.08 10.07 22.37 0.23 -0.86 16 28 C 0.09 1.56 7.25 39.11 0.28 1.84 16 29 N -0.57 -9.20 5.69 -177.15 -1.01 -10.21 16 30 H 0.43 5.10 4.80 -92.71 -0.44 4.65 16 31 C 0.12 2.96 5.48 86.85 0.48 3.43 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.79 7.58 -2.39 -0.02 1.78 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.37 18.21 7.80 -92.70 -0.72 17.49 16 36 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 37 H 0.08 1.96 8.03 -2.39 -0.02 1.94 16 38 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.09 1.24 7.08 -2.39 -0.02 1.22 16 40 H 0.09 1.21 7.18 -2.39 -0.02 1.20 16 41 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 42 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 43 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 45 H 0.08 1.89 8.03 -2.39 -0.02 1.88 16 46 H 0.08 2.01 8.03 -2.39 -0.02 1.99 16 Total: -1.00 -66.56 382.13 2.90 -63.66 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.14 Total: 28.01 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.33 Total: -0.56 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -5.02 Total: -117.23 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.07 Total: -18.37 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -66.56 2.90 -63.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754797849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.888 kcal (2) G-P(sol) polarization free energy of solvation -66.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds