Wall clock time and date at job start Wed Apr 1 2020 03:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08988 * 109.46975 * 2 1 4 4 C 1.53000 * 109.47031 * 239.99568 * 2 1 3 5 5 C 1.53004 * 109.46610 * 175.00080 * 4 2 1 6 6 C 1.53005 * 109.46929 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47227 * 180.02562 * 6 5 4 8 8 C 1.36939 * 120.00255 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99338 * 359.97438 * 8 7 6 10 10 C 1.38808 * 120.00111 * 179.97438 * 8 7 6 11 11 N 1.31622 * 120.00202 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00042 * 179.97438 * 10 8 7 13 13 H 1.48512 * 109.47069 * 90.00216 * 12 10 8 14 14 H 1.48497 * 109.47364 * 209.99964 * 12 10 8 15 15 H 1.48503 * 109.47211 * 330.00487 * 12 10 8 16 16 N 1.46502 * 109.46929 * 119.99673 * 2 1 3 17 17 C 1.34776 * 120.00162 * 275.00233 * 16 2 1 18 18 O 1.21590 * 119.99962 * 359.97438 * 17 16 2 19 19 C 1.47582 * 120.00008 * 179.97438 * 17 16 2 20 20 C 1.38643 * 120.41844 * 354.10202 * 19 17 16 21 21 C 1.39255 * 120.72368 * 180.27148 * 20 19 17 22 22 F 1.35106 * 119.43530 * 180.02562 * 21 20 19 23 23 C 1.36548 * 121.13101 * 0.02562 * 21 20 19 24 24 C 1.40296 * 119.91678 * 0.02562 * 23 21 20 25 25 C 1.40714 * 122.07545 * 179.97438 * 24 23 21 26 26 C 1.36236 * 118.66741 * 180.02562 * 25 24 23 27 27 N 1.32521 * 121.83383 * 0.02562 * 26 25 24 28 28 C 1.31325 * 122.72974 * 359.95111 * 27 26 25 29 29 C 1.40113 * 119.92089 * 0.05282 * 28 27 26 30 30 H 1.09007 * 109.47143 * 60.00497 * 1 2 3 31 31 H 1.09005 * 109.47112 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47306 * 300.00297 * 1 2 3 33 33 H 1.08997 * 109.47459 * 294.99738 * 4 2 1 34 34 H 1.08997 * 109.47051 * 55.00276 * 4 2 1 35 35 H 1.09002 * 109.47388 * 299.99841 * 5 4 2 36 36 H 1.08997 * 109.47254 * 60.00320 * 5 4 2 37 37 H 1.09002 * 109.46884 * 300.00062 * 6 5 4 38 38 H 1.08997 * 109.46962 * 60.00054 * 6 5 4 39 39 H 0.97010 * 120.00119 * 359.97438 * 7 6 5 40 40 H 0.96995 * 120.00502 * 179.97438 * 11 10 8 41 41 H 0.97004 * 120.00160 * 94.99532 * 16 2 1 42 42 H 1.08002 * 119.64347 * 0.27194 * 20 19 17 43 43 H 1.08002 * 120.04791 * 180.02562 * 23 21 20 44 44 H 1.08004 * 120.65985 * 0.03881 * 25 24 23 45 45 H 1.08001 * 119.08366 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.04249 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3135 6 6 4.0749 -1.3341 -2.5631 7 7 5.5349 -1.2313 -2.6244 8 6 6.2187 -1.8048 -3.6631 9 1 5.6816 -2.3332 -4.4367 10 6 7.6021 -1.7069 -3.7215 11 7 8.2567 -1.0632 -2.7783 12 14 8.5349 -2.4898 -5.1379 13 1 8.6671 -1.5093 -6.2455 14 1 9.8853 -2.8989 -4.6752 15 1 7.7937 -3.6832 -5.6191 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3572 18 8 1.8582 1.1617 2.4116 19 6 2.6383 -0.7140 3.5624 20 6 2.8541 -2.0834 3.5434 21 6 3.3123 -2.7473 4.6785 22 9 3.5142 -4.0823 4.6308 23 6 3.5610 -2.0721 5.8390 24 6 3.3542 -0.6858 5.9001 25 6 3.5953 0.0548 7.0720 26 6 3.3705 1.3984 7.0540 27 7 2.9334 2.0194 5.9679 28 6 2.6884 1.3913 4.8410 29 6 2.8874 0.0071 4.7547 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.7517 -1.7716 -1.2055 34 1 1.6054 -0.2619 -2.1369 35 1 3.8532 0.4369 -1.3573 36 1 3.9994 -1.0728 -0.4258 37 1 3.7865 -2.3844 -2.5198 38 1 3.6403 -0.8743 -3.4506 39 1 6.0173 -0.7563 -1.9297 40 1 9.2234 -0.9951 -2.8188 41 1 2.2489 -1.6318 1.1528 42 1 2.6649 -2.6415 2.6383 43 1 3.9164 -2.6044 6.7089 44 1 3.9515 -0.4322 7.9678 45 1 3.5529 1.9733 7.9499 46 1 2.3334 1.9410 3.9817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755498711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:34 Heat of formation + Delta-G solvation = -21.002993 kcal Electronic energy + Delta-G solvation = -29067.727615 eV Core-core repulsion = 24871.821250 eV Total energy + Delta-G solvation = -4195.906365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = -0.34 seconds Orbital eigenvalues (eV) -49.40611 -41.46646 -39.88839 -37.43470 -36.93426 -34.94426 -33.55097 -32.69451 -31.42918 -31.15691 -29.94938 -29.33913 -25.81763 -25.26774 -24.03601 -23.82102 -22.95375 -21.34915 -20.92149 -20.83488 -18.90350 -18.29190 -17.71098 -17.04203 -16.76509 -16.61224 -16.17212 -15.96698 -15.51060 -15.26708 -15.01604 -14.72541 -14.50697 -14.32653 -13.87402 -13.80243 -13.65171 -13.45828 -13.39244 -13.03683 -12.80748 -12.78587 -12.28714 -12.17205 -12.11322 -12.08116 -11.37057 -11.24320 -10.87189 -10.85036 -10.63441 -10.50775 -10.46141 -10.12482 -10.02920 -9.72493 -9.70853 -9.41041 -9.34982 -8.87742 -8.56500 -6.92672 -5.76775 -3.05770 -0.42444 0.33401 1.20355 2.15853 2.72493 2.86811 3.42989 3.47765 3.49762 3.57086 3.67321 3.95417 4.06054 4.29882 4.34157 4.40662 4.46266 4.54533 4.68530 4.77862 4.92137 4.97781 5.06520 5.12606 5.24388 5.35294 5.37104 5.43447 5.45548 5.55138 5.56327 5.63809 5.72632 5.74342 5.87389 5.99505 6.02645 6.13620 6.15470 6.27997 6.31200 6.37232 6.42001 6.82874 6.86294 7.15526 7.69019 7.69180 7.86425 8.42180 9.52960 10.11689 10.45734 11.46145 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.002441 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.757766 B =11470.034645 C =12420.533425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.095 0.905 4 C -0.124 4.124 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.708 5.708 17 C 0.564 3.436 18 O -0.526 6.526 19 C -0.064 4.064 20 C -0.114 4.114 21 C 0.120 3.880 22 F -0.129 7.129 23 C -0.127 4.127 24 C -0.005 4.005 25 C -0.165 4.165 26 C 0.088 3.912 27 N -0.489 5.489 28 C 0.154 3.846 29 C -0.092 4.092 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.016 0.984 38 H 0.018 0.982 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.402 0.598 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.142 0.858 45 H 0.156 0.844 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.752 -0.800 20.026 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.113 0.887 4 C -0.162 4.162 5 C -0.165 4.165 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.359 5.359 17 C 0.350 3.650 18 O -0.405 6.405 19 C -0.069 4.069 20 C -0.134 4.134 21 C 0.099 3.901 22 F -0.108 7.108 23 C -0.147 4.147 24 C -0.010 4.010 25 C -0.185 4.185 26 C -0.055 4.055 27 N -0.197 5.197 28 C -0.015 4.015 29 C -0.095 4.095 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.238 0.762 42 H 0.165 0.835 43 H 0.167 0.833 44 H 0.160 0.840 45 H 0.173 0.827 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -17.009 0.796 20.058 26.310 hybrid contribution 1.212 -2.153 -0.533 2.528 sum -15.797 -1.357 19.524 25.151 Atomic orbital electron populations 1.22183 0.95030 1.02188 1.02720 1.21170 0.93857 0.97996 0.83348 0.88738 1.21872 0.96976 1.00830 0.96546 1.21754 0.93539 1.01619 0.99582 1.20642 0.86239 0.96419 0.94167 1.42383 1.00176 1.66313 1.29009 1.19233 0.89445 1.27214 1.01253 0.91215 1.24756 0.96468 1.01227 0.98638 1.69661 1.07219 1.47042 1.34300 0.86186 0.79384 0.78819 0.81783 1.21688 1.21752 1.20769 1.46055 1.66100 1.14268 1.09479 1.17895 0.77793 0.86426 0.82840 1.90588 1.50591 1.15161 1.84130 1.19758 1.00544 0.92721 0.93898 1.21417 0.99386 0.94108 0.98460 1.17202 1.00348 0.77948 0.94567 1.91578 1.92440 1.29786 1.96970 1.21083 1.01900 0.93608 0.98069 1.17830 0.96772 0.92807 0.93639 1.21851 1.03178 0.95642 0.97802 1.22400 0.94245 0.92130 0.96734 1.67718 1.11594 1.40773 0.99631 1.24637 0.90114 0.90353 0.96424 1.18882 1.01838 0.96098 0.92725 0.91232 0.92435 0.92120 0.91326 0.89937 0.91789 0.92133 0.96594 0.96459 0.78334 0.93500 0.76210 0.83497 0.83306 0.84027 0.82694 0.78121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.40 2.57 -67.93 -0.17 1.23 16 3 H 0.09 1.11 7.57 -51.94 -0.39 0.72 16 4 C -0.12 -1.32 4.75 -26.73 -0.13 -1.44 16 5 C -0.13 -1.90 5.22 -26.73 -0.14 -2.04 16 6 C 0.15 2.98 6.26 -4.04 -0.03 2.96 16 7 N -0.73 -18.78 5.60 -59.91 -0.34 -19.11 16 8 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 10 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 11 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 12 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 N -0.71 -6.83 4.48 -54.83 -0.25 -7.08 16 17 C 0.56 6.39 7.70 -12.45 -0.10 6.30 16 18 O -0.53 -7.16 13.13 5.29 0.07 -7.09 16 19 C -0.06 -0.67 5.90 -104.67 -0.62 -1.29 16 20 C -0.11 -1.01 9.48 -39.05 -0.37 -1.38 16 21 C 0.12 1.08 7.22 -39.81 -0.29 0.80 16 22 F -0.13 -1.24 17.24 2.25 0.04 -1.20 16 23 C -0.13 -1.05 9.75 -39.42 -0.38 -1.44 16 24 C -0.01 -0.05 5.74 -106.84 -0.61 -0.66 16 25 C -0.16 -1.33 9.88 -39.37 -0.39 -1.72 16 26 C 0.09 0.81 11.07 -17.97 -0.20 0.61 16 27 N -0.49 -5.89 10.30 -13.22 -0.14 -6.03 16 28 C 0.15 1.89 10.49 -17.07 -0.18 1.71 16 29 C -0.09 -1.04 5.76 -106.58 -0.61 -1.65 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.34 7.67 -40.82 -0.31 10.03 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.40 3.15 6.67 -40.82 -0.27 2.88 16 42 H 0.15 0.98 6.42 -52.49 -0.34 0.64 16 43 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 45 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.20 2.61 4.97 -52.49 -0.26 2.35 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -33.81 387.96 -9.35 -43.16 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.18 Total: 8.39 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -4.11 Total: -6.54 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.01 Total: -60.06 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.07 Total: -7.09 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.81 -9.35 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755498711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.153 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.34 seconds